RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 PNISRQ8TF01 805 aaKnown RBP14.09□□□□□ -0.15
SMC1A-206ENST00000470241 TNS2Q63HR2 1409 aa14.08□□□□□ -0.15
SMC1A-206ENST00000470241 EXOC5O00471 708 aa14.08□□□□□ -0.16
SMC1A-206ENST00000470241 FCHSD2O94868 740 aa14.08□□□□□ -0.16
SMC1A-206ENST00000470241 PRKAR2BP31323 418 aa14.08□□□□□ -0.16
SMC1A-206ENST00000470241 ZCRB1Q8TBF4 217 aaKnown RBP14.08□□□□□ -0.16
SMC1A-206ENST00000470241 ADAMTS8Q9UP79 889 aa14.08□□□□□ -0.16
SMC1A-206ENST00000470241 WNK3Q9BYP7 1800 aa14.08□□□□□ -0.16
SMC1A-206ENST00000470241 LRRC37A3O60309 1634 aa14.08□□□□□ -0.16
SMC1A-206ENST00000470241 PLEKHG2Q9H7P9 1386 aa14.08□□□□□ -0.16
SMC1A-206ENST00000470241 PARP4Q9UKK3 1724 aaKnown RBP14.07□□□□□ -0.16
SMC1A-206ENST00000470241 WDR43Q15061 677 aaKnown RBP eCLIP14.07□□□□□ -0.16
SMC1A-206ENST00000470241 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.07□□□□□ -0.168e-7■■■■□ 20.6
SMC1A-206ENST00000470241 PDE3BQ13370 1112 aa14.06□□□□□ -0.16
SMC1A-206ENST00000470241 KRT27Q7Z3Y8 459 aa14.06□□□□□ -0.16
SMC1A-206ENST00000470241 MARCH10Q8NA82 808 aaPredicted RBP14.06□□□□□ -0.16
SMC1A-206ENST00000470241 PLEKHF1Q96S99 279 aa14.06□□□□□ -0.16
SMC1A-206ENST00000470241 PLEKHO1Q53GL0 409 aaPredicted RBP14.05□□□□□ -0.16
SMC1A-206ENST00000470241 ILDR2Q71H61 639 aa14.05□□□□□ -0.16
SMC1A-206ENST00000470241 DDX54Q8TDD1 881 aaKnown RBP14.05□□□□□ -0.16
SMC1A-206ENST00000470241 PHACTR3Q96KR7 559 aa14.05□□□□□ -0.16
SMC1A-206ENST00000470241 SPG7Q9UQ90 795 aa14.05□□□□□ -0.16
SMC1A-206ENST00000470241 CYP27B1O15528 508 aa14.04□□□□□ -0.16
SMC1A-206ENST00000470241 MTHFSDQ2M296 383 aaKnown RBP14.04□□□□□ -0.16
SMC1A-206ENST00000470241 AMOTQ4VCS5 1084 aa14.04□□□□□ -0.16
SMC1A-206ENST00000470241 FAM182BQ5T319 152 aa14.03□□□□□ -0.16
SMC1A-206ENST00000470241 PCDH11XQ9BZA7 1347 aa14.03□□□□□ -0.16
SMC1A-206ENST00000470241 PCDH11YQ9BZA8 1340 aa14.03□□□□□ -0.16
SMC1A-206ENST00000470241 PKD1L3Q7Z443 1732 aa14.02□□□□□ -0.16
SMC1A-206ENST00000470241 PHKG2P15735 406 aa14.02□□□□□ -0.17
SMC1A-206ENST00000470241 ZNF530Q6P9A1 599 aaPredicted RBP14.02□□□□□ -0.17
SMC1A-206ENST00000470241 CCDC146Q8IYE0 955 aa14.02□□□□□ -0.17
SMC1A-206ENST00000470241 PNNQ9H307 717 aaKnown RBP14.02□□□□□ -0.17
SMC1A-206ENST00000470241 IFNL2Q8IZJ0 200 aa14.01□□□□□ -0.17
SMC1A-206ENST00000470241 BRWD3Q6RI45 1802 aa14.01□□□□□ -0.17
SMC1A-206ENST00000470241 SHANK3Q9BYB0 1731 aa14.01□□□□□ -0.17
SMC1A-206ENST00000470241 BCL9O00512 1426 aa14□□□□□ -0.17
SMC1A-206ENST00000470241 NKX1-1Q15270 411 aaPredicted RBP14□□□□□ -0.17
SMC1A-206ENST00000470241 FAM9BQ8IZU0 186 aa14□□□□□ -0.17
SMC1A-206ENST00000470241 GAS2L2Q8NHY3 880 aa14□□□□□ -0.17
SMC1A-206ENST00000470241 RUNDC1Q96C34 613 aa14□□□□□ -0.17
SMC1A-206ENST00000470241 MAPK8IP3Q9UPT6 1336 aa13.99□□□□□ -0.17
SMC1A-206ENST00000470241 AKAP4Q5JQC9 854 aa13.99□□□□□ -0.17
SMC1A-206ENST00000470241 FAM196AQ6ZSG2 479 aa13.99□□□□□ -0.17
SMC1A-206ENST00000470241 NEFMP07197 916 aa13.98□□□□□ -0.17
SMC1A-206ENST00000470241 NFE2L2Q16236 605 aa13.98□□□□□ -0.17
SMC1A-206ENST00000470241 C1orf141Q5JVX7 400 aa13.98□□□□□ -0.17
SMC1A-206ENST00000470241 HSP90AB1P08238 724 aaKnown RBP13.97□□□□□ -0.17
SMC1A-206ENST00000470241 MPRIPQ6WCQ1 1025 aa13.97□□□□□ -0.17
SMC1A-206ENST00000470241 KDM6AO15550 1401 aaPredicted RBP13.97□□□□□ -0.17
SMC1A-206ENST00000470241 MAP3K5Q99683 1374 aa13.96□□□□□ -0.17
SMC1A-206ENST00000470241 APAF1O14727 1248 aa13.96□□□□□ -0.17
SMC1A-206ENST00000470241 TMPOP42166 694 aaKnown RBP13.96□□□□□ -0.17
SMC1A-206ENST00000470241 ACSBG1Q96GR2 724 aa13.96□□□□□ -0.17
SMC1A-206ENST00000470241 GNAT3A8MTJ3 354 aa13.95□□□□□ -0.18
SMC1A-206ENST00000470241 DCAF5Q96JK2 942 aa13.95□□□□□ -0.18
SMC1A-206ENST00000470241 LGR6Q9HBX8 967 aa13.95□□□□□ -0.18
SMC1A-206ENST00000470241 RRP7AQ9Y3A4 280 aaKnown RBP13.95□□□□□ -0.18
SMC1A-206ENST00000470241 RNMTO43148 476 aaKnown RBP13.94□□□□□ -0.18
SMC1A-206ENST00000470241 KCNQ2O43526 872 aa13.94□□□□□ -0.18
SMC1A-206ENST00000470241 PRIM1P49642 420 aaKnown RBP13.94□□□□□ -0.18
SMC1A-206ENST00000470241 RIPK4P57078 832 aa13.94□□□□□ -0.18
SMC1A-206ENST00000470241 PTF1AQ7RTS3 328 aa13.94□□□□□ -0.18
SMC1A-206ENST00000470241 IL17REQ8NFR9 667 aa13.94□□□□□ -0.18
SMC1A-206ENST00000470241 HTATSF1O43719 755 aaKnown RBP13.93□□□□□ -0.18
SMC1A-206ENST00000470241 TRIM37O94972 964 aa13.93□□□□□ -0.18
SMC1A-206ENST00000470241 SENP3-EIF4A1A0A087X0R7 540 aa13.92□□□□□ -0.18
SMC1A-206ENST00000470241 ERVV-2B6SEH9 535 aa13.92□□□□□ -0.18
SMC1A-206ENST00000470241 DCTN1Q14203 1278 aa13.92□□□□□ -0.18
SMC1A-206ENST00000470241 NEUROD2Q15784 382 aa13.92□□□□□ -0.18
SMC1A-206ENST00000470241 MCM10Q7L590 875 aa13.92□□□□□ -0.18
SMC1A-206ENST00000470241 BCL11BQ9C0K0 894 aaPredicted RBP13.92□□□□□ -0.18
SMC1A-206ENST00000470241 TRIM35Q9UPQ4 493 aa13.92□□□□□ -0.18
SMC1A-206ENST00000470241 CEMIPQ8WUJ3 1361 aa13.92□□□□□ -0.18
SMC1A-206ENST00000470241 TOGARAM1Q9Y4F4 1720 aa13.91□□□□□ -0.18
SMC1A-206ENST00000470241 RTF1Q92541 710 aaKnown RBP13.91□□□□□ -0.18
SMC1A-206ENST00000470241 SYTL4Q96C24 671 aaPredicted RBP13.91□□□□□ -0.18
SMC1A-206ENST00000470241 ADAMTS7Q9UKP4 1686 aa13.91□□□□□ -0.18
SMC1A-206ENST00000470241 CABP4P57796 275 aa13.9□□□□□ -0.18
SMC1A-206ENST00000470241 PIGBQ92521 554 aa13.9□□□□□ -0.18
SMC1A-206ENST00000470241 UPF1Q92900 1129 aaKnown RBP eCLIP13.9□□□□□ -0.18
SMC1A-206ENST00000470241 THUMPD2Q9BTF0 503 aaKnown RBP13.9□□□□□ -0.18
SMC1A-206ENST00000470241 DOT1LQ8TEK3 1739 aa13.9□□□□□ -0.18
SMC1A-206ENST00000470241 NHSQ6T4R5 1651 aa13.89□□□□□ -0.19
SMC1A-206ENST00000470241 MRC1P22897 1456 aa13.89□□□□□ -0.19
SMC1A-206ENST00000470241 LMOD3Q0VAK6 560 aa13.89□□□□□ -0.19
SMC1A-206ENST00000470241 NCBP3Q53F19 620 aaKnown RBP13.89□□□□□ -0.19
SMC1A-206ENST00000470241 NFATC2IPQ8NCF5 419 aa13.89□□□□□ -0.19
SMC1A-206ENST00000470241 SLC52A2Q9HAB3 445 aa13.89□□□□□ -0.19
SMC1A-206ENST00000470241 TMOD3Q9NYL9 352 aa13.89□□□□□ -0.19
SMC1A-206ENST00000470241 TEFQ10587 303 aa13.87□□□□□ -0.19
SMC1A-206ENST00000470241 CCDC27Q2M243 656 aa13.87□□□□□ -0.19
SMC1A-206ENST00000470241 SBF2Q86WG5 1849 aa13.86□□□□□ -0.19
SMC1A-206ENST00000470241 APBA3O96018 575 aa13.86□□□□□ -0.19
SMC1A-206ENST00000470241 CCDC125Q86Z20 511 aa13.86□□□□□ -0.19
SMC1A-206ENST00000470241 ATG3Q9NT62 314 aa13.86□□□□□ -0.19
SMC1A-206ENST00000470241 SALL2Q9Y467 1007 aaPredicted RBP13.86□□□□□ -0.19
SMC1A-206ENST00000470241 SCN11AQ9UI33 1791 aa13.86□□□□□ -0.19
SMC1A-206ENST00000470241 WWC1Q8IX03 1113 aa13.85□□□□□ -0.19
SMC1A-206ENST00000470241 ASAP1Q9ULH1 1129 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 143.4 ms