RNA–Protein interactions for RNA: ENST00000469223.5

HDAC6-217, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 796 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-217ENST00000469223 KLRG1Q96E93 195 aa18.5■□□□□ 0.55
HDAC6-217ENST00000469223 CABP1Q9NZU7 370 aa18.5■□□□□ 0.55
HDAC6-217ENST00000469223 MON2Q7Z3U7 1717 aa18.49■□□□□ 0.55
HDAC6-217ENST00000469223 TOGARAM1Q9Y4F4 1720 aa18.49■□□□□ 0.55
HDAC6-217ENST00000469223 JMYQ8N9B5 988 aa18.49■□□□□ 0.55
HDAC6-217ENST00000469223 NSD2O96028 1365 aa18.49■□□□□ 0.55
HDAC6-217ENST00000469223 SLC34A2O95436 690 aa18.48■□□□□ 0.55
HDAC6-217ENST00000469223 SYTL4Q96C24 671 aaPredicted RBP18.48■□□□□ 0.55
HDAC6-217ENST00000469223 CCNL1Q9UK58 526 aaPredicted RBP18.47■□□□□ 0.55
HDAC6-217ENST00000469223 TTC21BQ7Z4L5 1316 aa18.47■□□□□ 0.55
HDAC6-217ENST00000469223 PKD1L3Q7Z443 1732 aa18.46■□□□□ 0.55
HDAC6-217ENST00000469223 KIAA1551Q9HCM1 1747 aa18.46■□□□□ 0.55
HDAC6-217ENST00000469223 UBR3Q6ZT12 1888 aa18.46■□□□□ 0.54
HDAC6-217ENST00000469223 ANKRD36BQ8N2N9 1353 aa18.45■□□□□ 0.54
HDAC6-217ENST00000469223 CENPJQ9HC77 1338 aaPredicted RBP18.45■□□□□ 0.54
HDAC6-217ENST00000469223 N4BP2Q86UW6 1770 aaPredicted RBP18.45■□□□□ 0.54
HDAC6-217ENST00000469223 NMRK2Q9NPI5 230 aa18.44■□□□□ 0.54
HDAC6-217ENST00000469223 DDX54Q8TDD1 881 aaKnown RBP18.43■□□□□ 0.54
HDAC6-217ENST00000469223 STAC3Q96MF2 364 aa18.43■□□□□ 0.54
HDAC6-217ENST00000469223 C4BP0C0L5 1744 aa18.43■□□□□ 0.54
HDAC6-217ENST00000469223 RGPD2P0DJD1 1756 aa18.42■□□□□ 0.54
HDAC6-217ENST00000469223 KIF13BQ9NQT8 1826 aa18.42■□□□□ 0.54
HDAC6-217ENST00000469223 PRIM1P49642 420 aaKnown RBP18.42■□□□□ 0.54
HDAC6-217ENST00000469223 TTC21AQ8NDW8 1320 aa18.41■□□□□ 0.54
HDAC6-217ENST00000469223 RBM46Q8TBY0 533 aaKnown RBP18.4■□□□□ 0.54
HDAC6-217ENST00000469223 ANKRD24Q8TF21 1146 aa18.4■□□□□ 0.54
HDAC6-217ENST00000469223 TNRC6CQ9HCJ0 1690 aaKnown RBP18.39■□□□□ 0.53
HDAC6-217ENST00000469223 BRCA1P38398 1863 aaKnown RBP18.39■□□□□ 0.53
HDAC6-217ENST00000469223 USP47Q96K76 1375 aa18.38■□□□□ 0.53
HDAC6-217ENST00000469223 NBPF1Q3BBV0 1214 aa18.37■□□□□ 0.53
HDAC6-217ENST00000469223 PXDNLA1KZ92 1463 aa18.36■□□□□ 0.53
HDAC6-217ENST00000469223 KTN1Q86UP2 1357 aaKnown RBP18.35■□□□□ 0.53
HDAC6-217ENST00000469223 C16orf71Q8IYS4 520 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-217ENST00000469223 ARFGEF1Q9Y6D6 1849 aa18.35■□□□□ 0.53
HDAC6-217ENST00000469223 HSPA1AP0DMV8 641 aaKnown RBP18.34■□□□□ 0.53
HDAC6-217ENST00000469223 HSPA1BP0DMV9 641 aaKnown RBP18.34■□□□□ 0.53
HDAC6-217ENST00000469223 MEGF6O75095 1541 aa18.33■□□□□ 0.53
HDAC6-217ENST00000469223 ITGB4P16144 1822 aa18.33■□□□□ 0.53
HDAC6-217ENST00000469223 FLAD1Q8NFF5 587 aa18.33■□□□□ 0.52
HDAC6-217ENST00000469223 KCPQ6ZWJ8 1503 aa18.33■□□□□ 0.52
HDAC6-217ENST00000469223 FSTL1Q12841 308 aa18.32■□□□□ 0.52
HDAC6-217ENST00000469223 ZNF692Q9BU19 519 aaPredicted RBP18.32■□□□□ 0.52
HDAC6-217ENST00000469223 USP31Q70CQ4 1352 aa18.31■□□□□ 0.52
HDAC6-217ENST00000469223 RAB3GAP2Q9H2M9 1393 aa18.31■□□□□ 0.52
HDAC6-217ENST00000469223 AMIGO3Q86WK7 504 aa18.31■□□□□ 0.52
HDAC6-217ENST00000469223 PLEKHG2Q9H7P9 1386 aa18.3■□□□□ 0.52
HDAC6-217ENST00000469223 EVC2Q86UK5 1308 aa18.3■□□□□ 0.52
HDAC6-217ENST00000469223 PHF14O94880 888 aa18.3■□□□□ 0.52
HDAC6-217ENST00000469223 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.29■□□□□ 0.52
HDAC6-217ENST00000469223 PALLDQ8WX93 1383 aa18.29■□□□□ 0.52
HDAC6-217ENST00000469223 SMIM5Q71RC9 77 aa18.28■□□□□ 0.52
HDAC6-217ENST00000469223 NME9Q86XW9 330 aa18.28■□□□□ 0.52
HDAC6-217ENST00000469223 LTV1Q96GA3 475 aaPredicted RBP18.28■□□□□ 0.52
HDAC6-217ENST00000469223 AK7Q96M32 723 aa18.28■□□□□ 0.52
HDAC6-217ENST00000469223 BCS1LQ9Y276 419 aa18.28■□□□□ 0.52
HDAC6-217ENST00000469223 C10orf71Q711Q0 1435 aa18.28■□□□□ 0.52
HDAC6-217ENST00000469223 SBF1O95248 1867 aa18.27■□□□□ 0.52
HDAC6-217ENST00000469223 NSD3Q9BZ95 1437 aa18.27■□□□□ 0.52
HDAC6-217ENST00000469223 MAP2P11137 1827 aaKnown RBP18.26■□□□□ 0.51
HDAC6-217ENST00000469223 ARHGAP27Q6ZUM4 889 aa18.26■□□□□ 0.51
HDAC6-217ENST00000469223 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.25■□□□□ 0.51
HDAC6-217ENST00000469223 ZCRB1Q8TBF4 217 aaKnown RBP18.25■□□□□ 0.51
HDAC6-217ENST00000469223 CD163L1Q9NR16 1453 aa18.23■□□□□ 0.51
HDAC6-217ENST00000469223 SBNO2Q9Y2G9 1366 aa18.23■□□□□ 0.51
HDAC6-217ENST00000469223 C9orf131Q5VYM1 1079 aa18.23■□□□□ 0.51
HDAC6-217ENST00000469223 C4AP0C0L4 1744 aa18.23■□□□□ 0.51
HDAC6-217ENST00000469223 KDM2BQ8NHM5 1336 aa18.22■□□□□ 0.51
HDAC6-217ENST00000469223 SMC1BQ8NDV3 1235 aa18.21■□□□□ 0.51
HDAC6-217ENST00000469223 A0A0G2JLW4 131 aa18.2■□□□□ 0.5
HDAC6-217ENST00000469223 IP6K1Q92551 441 aa18.2■□□□□ 0.5
HDAC6-217ENST00000469223 TIAM2Q8IVF5 1701 aa18.2■□□□□ 0.5
HDAC6-217ENST00000469223 MMP10P09238 476 aa18.19■□□□□ 0.5
HDAC6-217ENST00000469223 SSFA2P28290 1259 aa18.19■□□□□ 0.5
HDAC6-217ENST00000469223 RRAGCQ9HB90 399 aa18.19■□□□□ 0.5
HDAC6-217ENST00000469223 FCHSD2O94868 740 aa18.18■□□□□ 0.5
HDAC6-217ENST00000469223 HMGB2P26583 209 aaKnown RBP18.18■□□□□ 0.5
HDAC6-217ENST00000469223 PCDH10Q9P2E7 1040 aa18.18■□□□□ 0.5
HDAC6-217ENST00000469223 EDC4Q6P2E9 1401 aaKnown RBP18.16■□□□□ 0.5
HDAC6-217ENST00000469223 TGFB2P61812 414 aa18.16■□□□□ 0.5
HDAC6-217ENST00000469223 MPRIPQ6WCQ1 1025 aa18.16■□□□□ 0.5
HDAC6-217ENST00000469223 RNF181Q9P0P0 153 aa18.16■□□□□ 0.5
HDAC6-217ENST00000469223 DPEP1P16444 411 aa18.15■□□□□ 0.5
HDAC6-217ENST00000469223 LINC00116Q8NCU8 138 aa18.15■□□□□ 0.5
HDAC6-217ENST00000469223 CCDC88AQ3V6T2 1871 aa18.14■□□□□ 0.49
HDAC6-217ENST00000469223 FAM161AQ3B820 660 aa18.14■□□□□ 0.49
HDAC6-217ENST00000469223 USHBP1Q8N6Y0 703 aa18.14■□□□□ 0.49
HDAC6-217ENST00000469223 GNPATO15228 680 aa18.13■□□□□ 0.49
HDAC6-217ENST00000469223 HOXC9P31274 260 aa18.12■□□□□ 0.49
HDAC6-217ENST00000469223 SMARCC1Q92922 1105 aaPredicted RBP18.12■□□□□ 0.49
HDAC6-217ENST00000469223 PCDH11XQ9BZA7 1347 aa18.12■□□□□ 0.49
HDAC6-217ENST00000469223 PCDH11YQ9BZA8 1340 aa18.12■□□□□ 0.49
HDAC6-217ENST00000469223 MAP3K19Q56UN5 1328 aa18.11■□□□□ 0.49
HDAC6-217ENST00000469223 COL5A3P25940 1745 aaPredicted RBP18.1■□□□□ 0.49
HDAC6-217ENST00000469223 CGNL1Q0VF96 1302 aa18.1■□□□□ 0.49
HDAC6-217ENST00000469223 A0A1W2PP64 1363 aa18.09■□□□□ 0.49
HDAC6-217ENST00000469223 RAPGEF4Q8WZA2 1011 aa18.09■□□□□ 0.49
HDAC6-217ENST00000469223 CCDC87Q9NVE4 849 aa18.09■□□□□ 0.49
HDAC6-217ENST00000469223 FOXN1O15353 648 aa18.08■□□□□ 0.48
HDAC6-217ENST00000469223 NBPF6Q5VWK0 638 aa18.08■□□□□ 0.48
HDAC6-217ENST00000469223 DCAF5Q96JK2 942 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms