RNA–Protein interactions for RNA: ENST00000467533.5

HDAC3-203, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 663 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-203ENST00000467533 PRELPP51888 382 aa14.91□□□□□ -0.02
HDAC3-203ENST00000467533 DDX54Q8TDD1 881 aaKnown RBP14.91□□□□□ -0.02
HDAC3-203ENST00000467533 IGSF1Q8N6C5 1336 aa14.91□□□□□ -0.02
HDAC3-203ENST00000467533 USP54Q70EL1 1684 aa14.9□□□□□ -0.02
HDAC3-203ENST00000467533 ANKRD36BQ8N2N9 1353 aa14.9□□□□□ -0.02
HDAC3-203ENST00000467533 MON2Q7Z3U7 1717 aa14.9□□□□□ -0.02
HDAC3-203ENST00000467533 TOMM70O94826 608 aa14.9□□□□□ -0.02
HDAC3-203ENST00000467533 NSD2O96028 1365 aa14.88□□□□□ -0.03
HDAC3-203ENST00000467533 PRIM1P49642 420 aaKnown RBP14.88□□□□□ -0.03
HDAC3-203ENST00000467533 ANKRD24Q8TF21 1146 aa14.88□□□□□ -0.03
HDAC3-203ENST00000467533 TAF1LQ8IZX4 1826 aa14.87□□□□□ -0.03
HDAC3-203ENST00000467533 NBPF1Q3BBV0 1214 aa14.87□□□□□ -0.03
HDAC3-203ENST00000467533 KLRG1Q96E93 195 aa14.87□□□□□ -0.03
HDAC3-203ENST00000467533 ZNF692Q9BU19 519 aaPredicted RBP14.87□□□□□ -0.03
HDAC3-203ENST00000467533 USP47Q96K76 1375 aa14.86□□□□□ -0.03
HDAC3-203ENST00000467533 RAB3GAP2Q9H2M9 1393 aa14.86□□□□□ -0.03
HDAC3-203ENST00000467533 KTN1Q86UP2 1357 aaKnown RBP14.85□□□□□ -0.03
HDAC3-203ENST00000467533 HTRA3P83110 453 aa14.85□□□□□ -0.03
HDAC3-203ENST00000467533 JMYQ8N9B5 988 aa14.85□□□□□ -0.03
HDAC3-203ENST00000467533 EVC2Q86UK5 1308 aa14.85□□□□□ -0.03
HDAC3-203ENST00000467533 TOGARAM1Q9Y4F4 1720 aa14.83□□□□□ -0.03
HDAC3-203ENST00000467533 FLAD1Q8NFF5 587 aa14.83□□□□□ -0.04
HDAC3-203ENST00000467533 C4BP0C0L5 1744 aa14.83□□□□□ -0.04
HDAC3-203ENST00000467533 C16orf71Q8IYS4 520 aaPredicted RBP14.82□□□□□ -0.04
HDAC3-203ENST00000467533 NMRK2Q9NPI5 230 aa14.82□□□□□ -0.04
HDAC3-203ENST00000467533 UBR3Q6ZT12 1888 aa14.81□□□□□ -0.04
HDAC3-203ENST00000467533 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.81□□□□□ -0.04
HDAC3-203ENST00000467533 RBM46Q8TBY0 533 aaKnown RBP14.81□□□□□ -0.04
HDAC3-203ENST00000467533 USP31Q70CQ4 1352 aa14.81□□□□□ -0.04
HDAC3-203ENST00000467533 RGPD2P0DJD1 1756 aa14.8□□□□□ -0.04
HDAC3-203ENST00000467533 PKD1L3Q7Z443 1732 aa14.8□□□□□ -0.04
HDAC3-203ENST00000467533 N4BP2Q86UW6 1770 aaPredicted RBP14.8□□□□□ -0.04
HDAC3-203ENST00000467533 LTV1Q96GA3 475 aaPredicted RBP14.79□□□□□ -0.04
HDAC3-203ENST00000467533 KIAA1551Q9HCM1 1747 aa14.79□□□□□ -0.04
HDAC3-203ENST00000467533 NME9Q86XW9 330 aa14.78□□□□□ -0.04
HDAC3-203ENST00000467533 AK7Q96M32 723 aa14.78□□□□□ -0.04
HDAC3-203ENST00000467533 KIF13BQ9NQT8 1826 aa14.78□□□□□ -0.04
HDAC3-203ENST00000467533 MEGF6O75095 1541 aa14.77□□□□□ -0.04
HDAC3-203ENST00000467533 NSD3Q9BZ95 1437 aa14.77□□□□□ -0.04
HDAC3-203ENST00000467533 PHF14O94880 888 aa14.77□□□□□ -0.05
HDAC3-203ENST00000467533 SLC34A2O95436 690 aa14.77□□□□□ -0.05
HDAC3-203ENST00000467533 HMGB2P26583 209 aaKnown RBP14.77□□□□□ -0.05
HDAC3-203ENST00000467533 FSTL1Q12841 308 aa14.77□□□□□ -0.05
HDAC3-203ENST00000467533 TNRC6CQ9HCJ0 1690 aaKnown RBP14.77□□□□□ -0.05
HDAC3-203ENST00000467533 PXDNLA1KZ92 1463 aa14.76□□□□□ -0.05
HDAC3-203ENST00000467533 PALLDQ8WX93 1383 aa14.76□□□□□ -0.05
HDAC3-203ENST00000467533 ZCRB1Q8TBF4 217 aaKnown RBP14.76□□□□□ -0.05
HDAC3-203ENST00000467533 PLEKHG2Q9H7P9 1386 aa14.75□□□□□ -0.05
HDAC3-203ENST00000467533 BCS1LQ9Y276 419 aa14.75□□□□□ -0.05
HDAC3-203ENST00000467533 HSPA1AP0DMV8 641 aaKnown RBP14.74□□□□□ -0.05
HDAC3-203ENST00000467533 HSPA1BP0DMV9 641 aaKnown RBP14.74□□□□□ -0.05
HDAC3-203ENST00000467533 ARHGAP27Q6ZUM4 889 aa14.74□□□□□ -0.05
HDAC3-203ENST00000467533 KCPQ6ZWJ8 1503 aa14.73□□□□□ -0.05
HDAC3-203ENST00000467533 AMIGO3Q86WK7 504 aa14.73□□□□□ -0.05
HDAC3-203ENST00000467533 IP6K1Q92551 441 aa14.73□□□□□ -0.05
HDAC3-203ENST00000467533 BRCA1P38398 1863 aaKnown RBP14.73□□□□□ -0.05
HDAC3-203ENST00000467533 SBNO2Q9Y2G9 1366 aa14.73□□□□□ -0.05
HDAC3-203ENST00000467533 ITGB4P16144 1822 aa14.72□□□□□ -0.05
HDAC3-203ENST00000467533 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.72□□□□□ -0.05
HDAC3-203ENST00000467533 SMIM5Q71RC9 77 aa14.72□□□□□ -0.05
HDAC3-203ENST00000467533 ARFGEF1Q9Y6D6 1849 aa14.71□□□□□ -0.05
HDAC3-203ENST00000467533 CD163L1Q9NR16 1453 aa14.71□□□□□ -0.05
HDAC3-203ENST00000467533 KDM2BQ8NHM5 1336 aa14.7□□□□□ -0.06
HDAC3-203ENST00000467533 EDC4Q6P2E9 1401 aaKnown RBP14.7□□□□□ -0.06
HDAC3-203ENST00000467533 C10orf71Q711Q0 1435 aa14.7□□□□□ -0.06
HDAC3-203ENST00000467533 C9orf131Q5VYM1 1079 aa14.7□□□□□ -0.06
HDAC3-203ENST00000467533 SSFA2P28290 1259 aa14.69□□□□□ -0.06
HDAC3-203ENST00000467533 MPRIPQ6WCQ1 1025 aa14.69□□□□□ -0.06
HDAC3-203ENST00000467533 A0A0G2JLW4 131 aa14.68□□□□□ -0.06
HDAC3-203ENST00000467533 FCHSD2O94868 740 aa14.68□□□□□ -0.06
HDAC3-203ENST00000467533 MMP10P09238 476 aa14.68□□□□□ -0.06
HDAC3-203ENST00000467533 HDGFL2Q7Z4V5 671 aaPredicted RBP14.68□□□□□ -0.06
HDAC3-203ENST00000467533 SMC1BQ8NDV3 1235 aa14.68□□□□□ -0.06
HDAC3-203ENST00000467533 PCNTO95613 3336 aa14.68□□□□□ -0.06
HDAC3-203ENST00000467533 MAP2P11137 1827 aaKnown RBP14.67□□□□□ -0.06
HDAC3-203ENST00000467533 TGFB2P61812 414 aa14.67□□□□□ -0.06
HDAC3-203ENST00000467533 SMARCC1Q92922 1105 aaPredicted RBP14.67□□□□□ -0.06
HDAC3-203ENST00000467533 PCDH11XQ9BZA7 1347 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 PCDH11YQ9BZA8 1340 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 C4AP0C0L4 1744 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 HOXC9P31274 260 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 AMPHP49418 695 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 TMC1Q8TDI8 760 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 RAPGEF4Q8WZA2 1011 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 RRAGCQ9HB90 399 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 CGNL1Q0VF96 1302 aa14.66□□□□□ -0.06
HDAC3-203ENST00000467533 GNPATO15228 680 aa14.65□□□□□ -0.06
HDAC3-203ENST00000467533 USHBP1Q8N6Y0 703 aa14.65□□□□□ -0.06
HDAC3-203ENST00000467533 RNF181Q9P0P0 153 aa14.65□□□□□ -0.06
HDAC3-203ENST00000467533 MAP3K19Q56UN5 1328 aa14.65□□□□□ -0.06
HDAC3-203ENST00000467533 ROCK2O75116 1388 aaKnown RBP14.64□□□□□ -0.07
HDAC3-203ENST00000467533 DPEP1P16444 411 aa14.64□□□□□ -0.07
HDAC3-203ENST00000467533 LINC00116Q8NCU8 138 aa14.64□□□□□ -0.07
HDAC3-203ENST00000467533 SMG6Q86US8 1419 aaKnown RBP14.64□□□□□ -0.07
HDAC3-203ENST00000467533 TATP17735 454 aaPredicted RBP14.63□□□□□ -0.07
HDAC3-203ENST00000467533 A0A1W2PP64 1363 aa14.62□□□□□ -0.07
HDAC3-203ENST00000467533 RTL1A6NKG5 1358 aa14.62□□□□□ -0.07
HDAC3-203ENST00000467533 SBF1O95248 1867 aa14.62□□□□□ -0.07
HDAC3-203ENST00000467533 CCDC87Q9NVE4 849 aa14.62□□□□□ -0.07
HDAC3-203ENST00000467533 NBPF6Q5VWK0 638 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms