RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 NSD3Q9BZ95 1437 aa26.65■■□□□ 1.86
COL9A3-206ENST00000466532 ATF5Q9Y2D1 282 aaPredicted RBP26.65■■□□□ 1.86
COL9A3-206ENST00000466532 TUBGCP6Q96RT7 1819 aa26.65■■□□□ 1.86
COL9A3-206ENST00000466532 USHBP1Q8N6Y0 703 aa26.64■■□□□ 1.86
COL9A3-206ENST00000466532 SYTL4Q96C24 671 aaPredicted RBP26.64■■□□□ 1.86
COL9A3-206ENST00000466532 CARD14Q9BXL6 1004 aa26.64■■□□□ 1.86
COL9A3-206ENST00000466532 ANKRD26Q9UPS8 1709 aa26.64■■□□□ 1.85
COL9A3-206ENST00000466532 INSRP06213 1382 aa26.63■■□□□ 1.85
COL9A3-206ENST00000466532 FLT4P35916 1363 aa26.63■■□□□ 1.85
COL9A3-206ENST00000466532 KIF24Q5T7B8 1368 aa26.62■■□□□ 1.85
COL9A3-206ENST00000466532 PTGER2P43116 358 aa26.62■■□□□ 1.85
COL9A3-206ENST00000466532 HSP90AB2PQ58FF8 381 aa26.62■■□□□ 1.85
COL9A3-206ENST00000466532 LRRC4BQ9NT99 713 aa26.62■■□□□ 1.85
COL9A3-206ENST00000466532 PRIM1P49642 420 aaKnown RBP26.61■■□□□ 1.85
COL9A3-206ENST00000466532 MTFR1LQ9H019 292 aa26.61■■□□□ 1.85
COL9A3-206ENST00000466532 ZNF827Q17R98 1081 aa26.6■■□□□ 1.85
COL9A3-206ENST00000466532 RAPGEF4Q8WZA2 1011 aa26.6■■□□□ 1.85
COL9A3-206ENST00000466532 CGNL1Q0VF96 1302 aa26.6■■□□□ 1.85
COL9A3-206ENST00000466532 DCAF8L1A6NGE4 600 aa26.59■■□□□ 1.85
COL9A3-206ENST00000466532 SLC27A3Q5K4L6 730 aa26.59■■□□□ 1.85
COL9A3-206ENST00000466532 NSD2O96028 1365 aa26.58■■□□□ 1.85
COL9A3-206ENST00000466532 PKD1L3Q7Z443 1732 aa26.57■■□□□ 1.84
COL9A3-206ENST00000466532 TATP17735 454 aaPredicted RBP26.57■■□□□ 1.84
COL9A3-206ENST00000466532 ITGB4P16144 1822 aa26.57■■□□□ 1.84
COL9A3-206ENST00000466532 EMILIN1Q9Y6C2 1016 aa26.56■■□□□ 1.84
COL9A3-206ENST00000466532 COL24A1Q17RW2 1714 aa26.54■■□□□ 1.84
COL9A3-206ENST00000466532 AKT1S1Q96B36 256 aa26.54■■□□□ 1.84
COL9A3-206ENST00000466532 SGIP1Q9BQI5 828 aa26.54■■□□□ 1.84
COL9A3-206ENST00000466532 POLR3GLQ9BT43 218 aa26.54■■□□□ 1.84
COL9A3-206ENST00000466532 KCNQ4P56696 695 aa26.53■■□□□ 1.84
COL9A3-206ENST00000466532 TOGARAM1Q9Y4F4 1720 aa26.53■■□□□ 1.84
COL9A3-206ENST00000466532 YY1P25490 414 aa26.52■■□□□ 1.84
COL9A3-206ENST00000466532 TAF1LQ8IZX4 1826 aa26.51■■□□□ 1.83
COL9A3-206ENST00000466532 C5P01031 1676 aa26.51■■□□□ 1.83
COL9A3-206ENST00000466532 PCDH11XQ9BZA7 1347 aa26.51■■□□□ 1.83
COL9A3-206ENST00000466532 PCDH11YQ9BZA8 1340 aa26.51■■□□□ 1.83
COL9A3-206ENST00000466532 PPM1GO15355 546 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-206ENST00000466532 FHDC1Q9C0D6 1143 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-206ENST00000466532 SYT17Q9BSW7 474 aa26.48■■□□□ 1.83
COL9A3-206ENST00000466532 CCNL1Q9UK58 526 aaPredicted RBP26.48■■□□□ 1.83
COL9A3-206ENST00000466532 NCAPD2Q15021 1401 aa26.48■■□□□ 1.83
COL9A3-206ENST00000466532 PNPLA7Q6ZV29 1317 aa26.47■■□□□ 1.83
COL9A3-206ENST00000466532 EIF4G2P78344 907 aaKnown RBP eCLIP26.47■■□□□ 1.83
COL9A3-206ENST00000466532 ARXQ96QS3 562 aa26.47■■□□□ 1.83
COL9A3-206ENST00000466532 TFCP2L1Q9NZI6 479 aa26.47■■□□□ 1.83
COL9A3-206ENST00000466532 CHD4Q14839 1912 aa26.47■■□□□ 1.83
COL9A3-206ENST00000466532 WASHC2AQ641Q2 1341 aa26.46■■□□□ 1.83
COL9A3-206ENST00000466532 CCER1Q8TC90 406 aaPredicted RBP26.46■■□□□ 1.83
COL9A3-206ENST00000466532 HSPA5P11021 654 aaKnown RBP26.45■■□□□ 1.82
COL9A3-206ENST00000466532 SLC16A10Q8TF71 515 aa26.45■■□□□ 1.82
COL9A3-206ENST00000466532 CYP27B1O15528 508 aa26.44■■□□□ 1.82
COL9A3-206ENST00000466532 POLKQ9UBT6 870 aa26.43■■□□□ 1.82
COL9A3-206ENST00000466532 MPRIPQ6WCQ1 1025 aa26.41■■□□□ 1.82
COL9A3-206ENST00000466532 TNNT2P45379 298 aaPredicted RBP26.4■■□□□ 1.82
COL9A3-206ENST00000466532 EYA1Q99502 592 aa26.4■■□□□ 1.82
COL9A3-206ENST00000466532 MAP3K5Q99683 1374 aa26.4■■□□□ 1.82
COL9A3-206ENST00000466532 PALLDQ8WX93 1383 aa26.39■■□□□ 1.82
COL9A3-206ENST00000466532 POLD1P28340 1107 aa26.39■■□□□ 1.82
COL9A3-206ENST00000466532 SPG7Q9UQ90 795 aa26.39■■□□□ 1.82
COL9A3-206ENST00000466532 C4BP0C0L5 1744 aa26.37■■□□□ 1.81
COL9A3-206ENST00000466532 PANK3Q9H999 370 aa26.37■■□□□ 1.81
COL9A3-206ENST00000466532 KLHL34Q8N239 644 aa26.36■■□□□ 1.81
COL9A3-206ENST00000466532 MSH5O43196 834 aa26.35■■□□□ 1.81
COL9A3-206ENST00000466532 UBR3Q6ZT12 1888 aa26.35■■□□□ 1.81
COL9A3-206ENST00000466532 EIF4A2Q14240 407 aaKnown RBP26.34■■□□□ 1.81
COL9A3-206ENST00000466532 NKX1-1Q15270 411 aaPredicted RBP26.34■■□□□ 1.81
COL9A3-206ENST00000466532 COL23A1Q86Y22 540 aaPredicted RBP26.33■■□□□ 1.81
COL9A3-206ENST00000466532 SMARCC1Q92922 1105 aaPredicted RBP26.33■■□□□ 1.81
COL9A3-206ENST00000466532 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.33■■□□□ 1.81
COL9A3-206ENST00000466532 HMGB2P26583 209 aaKnown RBP26.32■■□□□ 1.8
COL9A3-206ENST00000466532 PIGBQ92521 554 aa26.32■■□□□ 1.8
COL9A3-206ENST00000466532 IFNL2Q8IZJ0 200 aa26.29■■□□□ 1.8
COL9A3-206ENST00000466532 UTRNP46939 3433 aa26.29■■□□□ 1.8
COL9A3-206ENST00000466532 PHKG2P15735 406 aa26.28■■□□□ 1.8
COL9A3-206ENST00000466532 TMOD3Q9NYL9 352 aa26.28■■□□□ 1.8
COL9A3-206ENST00000466532 IGSF1Q8N6C5 1336 aa26.27■■□□□ 1.8
COL9A3-206ENST00000466532 PLEKHG2Q9H7P9 1386 aa26.26■■□□□ 1.79
COL9A3-206ENST00000466532 MSL1Q68DK7 614 aa26.26■■□□□ 1.79
COL9A3-206ENST00000466532 FLAD1Q8NFF5 587 aa26.26■■□□□ 1.79
COL9A3-206ENST00000466532 GPR162Q16538 588 aa26.25■■□□□ 1.79
COL9A3-206ENST00000466532 MORC1Q86VD1 984 aa26.25■■□□□ 1.79
COL9A3-206ENST00000466532 AK7Q96M32 723 aa26.25■■□□□ 1.79
COL9A3-206ENST00000466532 NLGN2Q8NFZ4 835 aa26.23■■□□□ 1.79
COL9A3-206ENST00000466532 LOC102724428A0A0B4J2F2 783 aa26.22■■□□□ 1.79
COL9A3-206ENST00000466532 SIK1P57059 783 aa26.22■■□□□ 1.79
COL9A3-206ENST00000466532 PELP1Q8IZL8 1130 aaKnown RBP26.22■■□□□ 1.79
COL9A3-206ENST00000466532 KNSTRNQ9Y448 316 aa26.22■■□□□ 1.79
COL9A3-206ENST00000466532 ASAP1Q9ULH1 1129 aa26.21■■□□□ 1.79
COL9A3-206ENST00000466532 ZNF831Q5JPB2 1677 aa26.19■■□□□ 1.78
COL9A3-206ENST00000466532 PHF14O94880 888 aa26.19■■□□□ 1.78
COL9A3-206ENST00000466532 AMIGO3Q86WK7 504 aa26.19■■□□□ 1.78
COL9A3-206ENST00000466532 ZNF784Q8NCA9 323 aaPredicted RBP26.19■■□□□ 1.78
COL9A3-206ENST00000466532 VIRMAQ69YN4 1812 aaKnown RBP26.18■■□□□ 1.78
COL9A3-206ENST00000466532 PLEKHO1Q53GL0 409 aaPredicted RBP26.18■■□□□ 1.78
COL9A3-206ENST00000466532 LINC00116Q8NCU8 138 aa26.18■■□□□ 1.78
COL9A3-206ENST00000466532 COL5A3P25940 1745 aaPredicted RBP26.17■■□□□ 1.78
COL9A3-206ENST00000466532 ATP6V1AP38606 617 aa26.17■■□□□ 1.78
COL9A3-206ENST00000466532 ATG3Q9NT62 314 aa26.17■■□□□ 1.78
COL9A3-206ENST00000466532 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.16■■□□□ 1.78
COL9A3-206ENST00000466532 HSP90AB1P08238 724 aaKnown RBP26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms