RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ERBB3P21860 1342 aa16.77■□□□□ 0.28
SQSTM1-206ENST00000466342 TTC21AQ8NDW8 1320 aa16.76■□□□□ 0.27
SQSTM1-206ENST00000466342 COL13A1Q5TAT6 717 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-206ENST00000466342 LTN1O94822 1766 aa16.76■□□□□ 0.27
SQSTM1-206ENST00000466342 CAPN15O75808 1086 aa16.74■□□□□ 0.27
SQSTM1-206ENST00000466342 TOMM70O94826 608 aa16.74■□□□□ 0.27
SQSTM1-206ENST00000466342 MSL1Q68DK7 614 aa16.74■□□□□ 0.27
SQSTM1-206ENST00000466342 DDX54Q8TDD1 881 aaKnown RBP16.74■□□□□ 0.27
SQSTM1-206ENST00000466342 WDR90Q96KV7 1748 aa16.73■□□□□ 0.27
SQSTM1-206ENST00000466342 PRIM1P49642 420 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-206ENST00000466342 SYTL4Q96C24 671 aaPredicted RBP16.73■□□□□ 0.27
SQSTM1-206ENST00000466342 SBNO2Q9Y2G9 1366 aa16.73■□□□□ 0.27
SQSTM1-206ENST00000466342 CCNL1Q9UK58 526 aaPredicted RBP16.72■□□□□ 0.27
SQSTM1-206ENST00000466342 DOT1LQ8TEK3 1739 aa16.72■□□□□ 0.27
SQSTM1-206ENST00000466342 PRELPP51888 382 aa16.71■□□□□ 0.27
SQSTM1-206ENST00000466342 ANKRD36BQ8N2N9 1353 aa16.71■□□□□ 0.27
SQSTM1-206ENST00000466342 ANKRD24Q8TF21 1146 aa16.7■□□□□ 0.26
SQSTM1-206ENST00000466342 USP47Q96K76 1375 aa16.69■□□□□ 0.26
SQSTM1-206ENST00000466342 TAF1LQ8IZX4 1826 aa16.69■□□□□ 0.26
SQSTM1-206ENST00000466342 TNS4Q8IZW8 715 aa16.69■□□□□ 0.26
SQSTM1-206ENST00000466342 FLAD1Q8NFF5 587 aa16.69■□□□□ 0.26
SQSTM1-206ENST00000466342 IGSF1Q8N6C5 1336 aa16.69■□□□□ 0.26
SQSTM1-206ENST00000466342 JMYQ8N9B5 988 aa16.68■□□□□ 0.26
SQSTM1-206ENST00000466342 KLRG1Q96E93 195 aa16.68■□□□□ 0.26
SQSTM1-206ENST00000466342 C5P01031 1676 aa16.68■□□□□ 0.26
SQSTM1-206ENST00000466342 USP54Q70EL1 1684 aa16.68■□□□□ 0.26
SQSTM1-206ENST00000466342 NSD2O96028 1365 aa16.67■□□□□ 0.26
SQSTM1-206ENST00000466342 USP31Q70CQ4 1352 aa16.66■□□□□ 0.26
SQSTM1-206ENST00000466342 KTN1Q86UP2 1357 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-206ENST00000466342 HMGB2P26583 209 aaKnown RBP16.66■□□□□ 0.26
SQSTM1-206ENST00000466342 MON2Q7Z3U7 1717 aa16.66■□□□□ 0.26
SQSTM1-206ENST00000466342 WWC3Q9ULE0 1092 aa16.66■□□□□ 0.26
SQSTM1-206ENST00000466342 FAM208AQ9UK61 1670 aaKnown RBP16.65■□□□□ 0.26
SQSTM1-206ENST00000466342 SLC24A1O60721 1099 aa16.65■□□□□ 0.26
SQSTM1-206ENST00000466342 PUS7Q96PZ0 661 aaKnown RBP16.65■□□□□ 0.26
SQSTM1-206ENST00000466342 ST20-MTHFSA0A0A6YYL1 179 aa16.64■□□□□ 0.25
SQSTM1-206ENST00000466342 PCNTO95613 3336 aa16.64■□□□□ 0.25
SQSTM1-206ENST00000466342 CICQ96RK0 1608 aaPredicted RBP16.63■□□□□ 0.25
SQSTM1-206ENST00000466342 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.63■□□□□ 0.25
SQSTM1-206ENST00000466342 ZCRB1Q8TBF4 217 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-206ENST00000466342 RBM46Q8TBY0 533 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-206ENST00000466342 RGPD2P0DJD1 1756 aa16.61■□□□□ 0.25
SQSTM1-206ENST00000466342 HTRA3P83110 453 aa16.61■□□□□ 0.25
SQSTM1-206ENST00000466342 TESK2Q96S53 571 aa16.61■□□□□ 0.25
SQSTM1-206ENST00000466342 NMRK2Q9NPI5 230 aa16.61■□□□□ 0.25
SQSTM1-206ENST00000466342 UBR3Q6ZT12 1888 aa16.6■□□□□ 0.25
SQSTM1-206ENST00000466342 HDGFL2Q7Z4V5 671 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-206ENST00000466342 NME9Q86XW9 330 aa16.59■□□□□ 0.25
SQSTM1-206ENST00000466342 TMC1Q8TDI8 760 aa16.59■□□□□ 0.25
SQSTM1-206ENST00000466342 IP6K1Q92551 441 aa16.59■□□□□ 0.25
SQSTM1-206ENST00000466342 EIF4G2P78344 907 aaKnown RBP eCLIP16.58■□□□□ 0.24
SQSTM1-206ENST00000466342 FSTL1Q12841 308 aa16.58■□□□□ 0.24
SQSTM1-206ENST00000466342 SLC12A5Q9H2X9 1139 aa16.58■□□□□ 0.24
SQSTM1-206ENST00000466342 TERF2IPQ9NYB0 399 aa16.58■□□□□ 0.24
SQSTM1-206ENST00000466342 C4BP0C0L5 1744 aa16.58■□□□□ 0.24
SQSTM1-206ENST00000466342 KIF13BQ9NQT8 1826 aa16.57■□□□□ 0.24
SQSTM1-206ENST00000466342 N4BP2Q86UW6 1770 aaPredicted RBP16.57■□□□□ 0.24
SQSTM1-206ENST00000466342 C16orf71Q8IYS4 520 aaPredicted RBP16.57■□□□□ 0.24
SQSTM1-206ENST00000466342 LTV1Q96GA3 475 aaPredicted RBP16.57■□□□□ 0.24
SQSTM1-206ENST00000466342 TOGARAM1Q9Y4F4 1720 aa16.56■□□□□ 0.24
SQSTM1-206ENST00000466342 CD163L1Q9NR16 1453 aa16.56■□□□□ 0.24
SQSTM1-206ENST00000466342 HSPA5P11021 654 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-206ENST00000466342 AK7Q96M32 723 aa16.55■□□□□ 0.24
SQSTM1-206ENST00000466342 KIAA1551Q9HCM1 1747 aa16.54■□□□□ 0.24
SQSTM1-206ENST00000466342 TMF1P82094 1093 aa16.54■□□□□ 0.24
SQSTM1-206ENST00000466342 ARHGAP27Q6ZUM4 889 aa16.54■□□□□ 0.24
SQSTM1-206ENST00000466342 AMIGO3Q86WK7 504 aa16.54■□□□□ 0.24
SQSTM1-206ENST00000466342 ITGB4P16144 1822 aa16.54■□□□□ 0.24
SQSTM1-206ENST00000466342 EDC4Q6P2E9 1401 aaKnown RBP16.53■□□□□ 0.24
SQSTM1-206ENST00000466342 NSD3Q9BZ95 1437 aa16.53■□□□□ 0.24
SQSTM1-206ENST00000466342 PALLDQ8WX93 1383 aa16.52■□□□□ 0.24
SQSTM1-206ENST00000466342 MEGF6O75095 1541 aa16.52■□□□□ 0.24
SQSTM1-206ENST00000466342 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.52■□□□□ 0.24
SQSTM1-206ENST00000466342 PHF14O94880 888 aa16.52■□□□□ 0.24
SQSTM1-206ENST00000466342 SLC34A2O95436 690 aa16.52■□□□□ 0.24
SQSTM1-206ENST00000466342 TGFB2P61812 414 aa16.52■□□□□ 0.24
SQSTM1-206ENST00000466342 BCS1LQ9Y276 419 aa16.52■□□□□ 0.24
SQSTM1-206ENST00000466342 A0A1W2PP64 1363 aa16.51■□□□□ 0.23
SQSTM1-206ENST00000466342 BRCA1P38398 1863 aaKnown RBP16.51■□□□□ 0.23
SQSTM1-206ENST00000466342 SSFA2P28290 1259 aa16.51■□□□□ 0.23
SQSTM1-206ENST00000466342 SMIM5Q71RC9 77 aa16.51■□□□□ 0.23
SQSTM1-206ENST00000466342 CGNL1Q0VF96 1302 aa16.5■□□□□ 0.23
SQSTM1-206ENST00000466342 PXDNLA1KZ92 1463 aa16.5■□□□□ 0.23
SQSTM1-206ENST00000466342 ARFGEF1Q9Y6D6 1849 aa16.49■□□□□ 0.23
SQSTM1-206ENST00000466342 A0A0G2JLW4 131 aa16.49■□□□□ 0.23
SQSTM1-206ENST00000466342 ZEB1P37275 1124 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-206ENST00000466342 CDCA8Q53HL2 280 aa16.49■□□□□ 0.23
SQSTM1-206ENST00000466342 MPRIPQ6WCQ1 1025 aa16.49■□□□□ 0.23
SQSTM1-206ENST00000466342 PKD1L3Q7Z443 1732 aa16.49■□□□□ 0.23
SQSTM1-206ENST00000466342 SMARCC1Q92922 1105 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-206ENST00000466342 KDM2BQ8NHM5 1336 aa16.48■□□□□ 0.23
SQSTM1-206ENST00000466342 HSPA1AP0DMV8 641 aaKnown RBP16.48■□□□□ 0.23
SQSTM1-206ENST00000466342 HSPA1BP0DMV9 641 aaKnown RBP16.48■□□□□ 0.23
SQSTM1-206ENST00000466342 HOXC9P31274 260 aa16.48■□□□□ 0.23
SQSTM1-206ENST00000466342 C9orf131Q5VYM1 1079 aa16.48■□□□□ 0.23
SQSTM1-206ENST00000466342 PLEKHG2Q9H7P9 1386 aa16.48■□□□□ 0.23
SQSTM1-206ENST00000466342 MAP2P11137 1827 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-206ENST00000466342 TNRC6CQ9HCJ0 1690 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-206ENST00000466342 AMPHP49418 695 aa16.47■□□□□ 0.23
SQSTM1-206ENST00000466342 RRAGCQ9HB90 399 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms