RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 DDX54Q8TDD1 881 aaKnown RBP24.4■■□□□ 1.5
HMGN1-209ENST00000463631 PNPLA7Q6ZV29 1317 aa24.39■■□□□ 1.5
HMGN1-209ENST00000463631 LTV1Q96GA3 475 aaPredicted RBP24.39■■□□□ 1.49
HMGN1-209ENST00000463631 ST20-MTHFSA0A0A6YYL1 179 aa24.36■■□□□ 1.49
HMGN1-209ENST00000463631 AMPHP49418 695 aa24.35■■□□□ 1.49
HMGN1-209ENST00000463631 PRIM1P49642 420 aaKnown RBP24.35■■□□□ 1.49
HMGN1-209ENST00000463631 POLD1P28340 1107 aa24.34■■□□□ 1.49
HMGN1-209ENST00000463631 ZCRB1Q8TBF4 217 aaKnown RBP24.34■■□□□ 1.49
HMGN1-209ENST00000463631 CGNL1Q0VF96 1302 aa24.34■■□□□ 1.49
HMGN1-209ENST00000463631 SYTL4Q96C24 671 aaPredicted RBP24.33■■□□□ 1.49
HMGN1-209ENST00000463631 TFCP2L1Q9NZI6 479 aa24.32■■□□□ 1.48
HMGN1-209ENST00000463631 GOLGB1Q14789 3259 aaKnown RBP24.32■■□□□ 1.48
HMGN1-209ENST00000463631 SMG6Q86US8 1419 aaKnown RBP24.31■■□□□ 1.48
HMGN1-209ENST00000463631 KIF20BQ96Q89 1820 aa24.31■■□□□ 1.48
HMGN1-209ENST00000463631 FBLN1P23142 703 aa24.3■■□□□ 1.48
HMGN1-209ENST00000463631 KCNQ4P56696 695 aa24.29■■□□□ 1.48
HMGN1-209ENST00000463631 C5P01031 1676 aa24.29■■□□□ 1.48
HMGN1-209ENST00000463631 KIF24Q5T7B8 1368 aa24.29■■□□□ 1.48
HMGN1-209ENST00000463631 FYB1O15117 783 aa24.28■■□□□ 1.48
HMGN1-209ENST00000463631 GPR162Q16538 588 aa24.28■■□□□ 1.48
HMGN1-209ENST00000463631 NBPF6Q5VWK0 638 aa24.28■■□□□ 1.48
HMGN1-209ENST00000463631 NBPF4Q96M43 638 aa24.28■■□□□ 1.48
HMGN1-209ENST00000463631 CCNL1Q9UK58 526 aaPredicted RBP24.28■■□□□ 1.48
HMGN1-209ENST00000463631 USP47Q96K76 1375 aa24.28■■□□□ 1.48
HMGN1-209ENST00000463631 RRS1Q15050 365 aaKnown RBP24.26■■□□□ 1.47
HMGN1-209ENST00000463631 INSRP06213 1382 aa24.26■■□□□ 1.47
HMGN1-209ENST00000463631 RAPGEF4Q8WZA2 1011 aa24.25■■□□□ 1.47
HMGN1-209ENST00000463631 FLT4P35916 1363 aa24.25■■□□□ 1.47
HMGN1-209ENST00000463631 TAF1LQ8IZX4 1826 aa24.24■■□□□ 1.47
HMGN1-209ENST00000463631 TMF1P82094 1093 aa24.24■■□□□ 1.47
HMGN1-209ENST00000463631 KLHL34Q8N239 644 aa24.24■■□□□ 1.47
HMGN1-209ENST00000463631 GGNBP2Q9H3C7 697 aa24.24■■□□□ 1.47
HMGN1-209ENST00000463631 PCDH11XQ9BZA7 1347 aa24.23■■□□□ 1.47
HMGN1-209ENST00000463631 PCDH11YQ9BZA8 1340 aa24.23■■□□□ 1.47
HMGN1-209ENST00000463631 PKD1L3Q7Z443 1732 aa24.23■■□□□ 1.47
HMGN1-209ENST00000463631 TOGARAM1Q9Y4F4 1720 aa24.22■■□□□ 1.47
HMGN1-209ENST00000463631 C1QTNF8P60827 252 aa24.22■■□□□ 1.47
HMGN1-209ENST00000463631 USHBP1Q8N6Y0 703 aa24.22■■□□□ 1.47
HMGN1-209ENST00000463631 NLGN2Q8NFZ4 835 aa24.22■■□□□ 1.47
HMGN1-209ENST00000463631 ANKRD26Q9UPS8 1709 aa24.21■■□□□ 1.47
HMGN1-209ENST00000463631 HMGB2P26583 209 aaKnown RBP24.21■■□□□ 1.47
HMGN1-209ENST00000463631 NCAPD2Q15021 1401 aa24.2■■□□□ 1.46
HMGN1-209ENST00000463631 TATP17735 454 aaPredicted RBP24.2■■□□□ 1.46
HMGN1-209ENST00000463631 COL23A1Q86Y22 540 aaPredicted RBP24.2■■□□□ 1.46
HMGN1-209ENST00000463631 HSP90AB2PQ58FF8 381 aa24.19■■□□□ 1.46
HMGN1-209ENST00000463631 PALLDQ8WX93 1383 aa24.18■■□□□ 1.46
HMGN1-209ENST00000463631 ITGB4P16144 1822 aa24.18■■□□□ 1.46
HMGN1-209ENST00000463631 CDCA8Q53HL2 280 aa24.17■■□□□ 1.46
HMGN1-209ENST00000463631 C4BP0C0L5 1744 aa24.17■■□□□ 1.46
HMGN1-209ENST00000463631 PELP1Q8IZL8 1130 aaKnown RBP24.16■■□□□ 1.46
HMGN1-209ENST00000463631 FLAD1Q8NFF5 587 aa24.16■■□□□ 1.46
HMGN1-209ENST00000463631 SENP3-EIF4A1A0A087X0R7 540 aa24.15■■□□□ 1.46
HMGN1-209ENST00000463631 CYP27B1O15528 508 aa24.15■■□□□ 1.46
HMGN1-209ENST00000463631 GRIN3BO60391 1043 aa24.15■■□□□ 1.46
HMGN1-209ENST00000463631 MSH5O43196 834 aa24.14■■□□□ 1.45
HMGN1-209ENST00000463631 YBX3P16989 372 aaKnown RBP eCLIP24.14■■□□□ 1.45
HMGN1-209ENST00000463631 UBR3Q6ZT12 1888 aa24.13■■□□□ 1.45
HMGN1-209ENST00000463631 GIGYF1O75420 1035 aaPredicted RBP24.13■■□□□ 1.45
HMGN1-209ENST00000463631 CD2APQ9Y5K6 639 aa24.12■■□□□ 1.45
HMGN1-209ENST00000463631 NSD3Q9BZ95 1437 aa24.11■■□□□ 1.45
HMGN1-209ENST00000463631 SMARCC1Q92922 1105 aaPredicted RBP24.11■■□□□ 1.45
HMGN1-209ENST00000463631 MAP2P11137 1827 aaKnown RBP24.11■■□□□ 1.45
HMGN1-209ENST00000463631 MSL1Q68DK7 614 aa24.1■■□□□ 1.45
HMGN1-209ENST00000463631 MPRIPQ6WCQ1 1025 aa24.1■■□□□ 1.45
HMGN1-209ENST00000463631 NKX1-1Q15270 411 aaPredicted RBP24.09■■□□□ 1.45
HMGN1-209ENST00000463631 CARD14Q9BXL6 1004 aa24.09■■□□□ 1.45
HMGN1-209ENST00000463631 EMILIN1Q9Y6C2 1016 aa24.09■■□□□ 1.45
HMGN1-209ENST00000463631 CEP350Q5VT06 3117 aa24.06■■□□□ 1.44
HMGN1-209ENST00000463631 PLEKHG2Q9H7P9 1386 aa24.05■■□□□ 1.44
HMGN1-209ENST00000463631 AK7Q96M32 723 aa24.05■■□□□ 1.44
HMGN1-209ENST00000463631 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.05■■□□□ 1.44
HMGN1-209ENST00000463631 WASHC2AQ641Q2 1341 aa24.05■■□□□ 1.44
HMGN1-209ENST00000463631 PIGBQ92521 554 aa24.04■■□□□ 1.44
HMGN1-209ENST00000463631 SPG7Q9UQ90 795 aa24.04■■□□□ 1.44
HMGN1-209ENST00000463631 ADCY9O60503 1353 aa24.03■■□□□ 1.44
HMGN1-209ENST00000463631 ATP10DQ9P241 1426 aa24.03■■□□□ 1.44
HMGN1-209ENST00000463631 AMIGO3Q86WK7 504 aa24.03■■□□□ 1.44
HMGN1-209ENST00000463631 SSFA2P28290 1259 aa24.01■■□□□ 1.43
HMGN1-209ENST00000463631 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24■■□□□ 1.43
HMGN1-209ENST00000463631 ZNF831Q5JPB2 1677 aa23.99■■□□□ 1.43
HMGN1-209ENST00000463631 LOC102724428A0A0B4J2F2 783 aa23.99■■□□□ 1.43
HMGN1-209ENST00000463631 SIK1P57059 783 aa23.99■■□□□ 1.43
HMGN1-209ENST00000463631 LINC00116Q8NCU8 138 aa23.98■■□□□ 1.43
HMGN1-209ENST00000463631 EYA1Q99502 592 aa23.98■■□□□ 1.43
HMGN1-209ENST00000463631 PPM1GO15355 546 aaPredicted RBP23.97■■□□□ 1.43
HMGN1-209ENST00000463631 CICQ96RK0 1608 aaPredicted RBP23.97■■□□□ 1.43
HMGN1-209ENST00000463631 TMOD3Q9NYL9 352 aa23.97■■□□□ 1.43
HMGN1-209ENST00000463631 TIMELESSQ9UNS1 1208 aa23.97■■□□□ 1.43
HMGN1-209ENST00000463631 IGSF1Q8N6C5 1336 aa23.96■■□□□ 1.43
HMGN1-209ENST00000463631 PHF14O94880 888 aa23.96■■□□□ 1.43
HMGN1-209ENST00000463631 PHKG2P15735 406 aa23.95■■□□□ 1.42
HMGN1-209ENST00000463631 IFNL2Q8IZJ0 200 aa23.95■■□□□ 1.42
HMGN1-209ENST00000463631 POLKQ9UBT6 870 aa23.95■■□□□ 1.42
HMGN1-209ENST00000463631 KIF13BQ9NQT8 1826 aa23.95■■□□□ 1.42
HMGN1-209ENST00000463631 KDRP35968 1356 aa23.94■■□□□ 1.42
HMGN1-209ENST00000463631 ITPK1Q13572 414 aa23.93■■□□□ 1.42
HMGN1-209ENST00000463631 ASAP1Q9ULH1 1129 aa23.93■■□□□ 1.42
HMGN1-209ENST00000463631 TRIM26Q12899 539 aaPredicted RBP23.92■■□□□ 1.42
HMGN1-209ENST00000463631 SMIM5Q71RC9 77 aa23.92■■□□□ 1.42
HMGN1-209ENST00000463631 GPBP1L1Q9HC44 474 aaPredicted RBP23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms