RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 DDX54Q8TDD1 881 aaKnown RBP25.66■■□□□ 1.7
COL9A3-203ENST00000462700 EYA1Q99502 592 aa25.66■■□□□ 1.7
COL9A3-203ENST00000462700 SHANK3Q9BYB0 1731 aa25.64■■□□□ 1.7
COL9A3-203ENST00000462700 NHSQ6T4R5 1651 aa25.63■■□□□ 1.69
COL9A3-203ENST00000462700 ACSBG1Q96GR2 724 aa25.62■■□□□ 1.69
COL9A3-203ENST00000462700 KCNQ2O43526 872 aa25.61■■□□□ 1.69
COL9A3-203ENST00000462700 PLSCR1O15162 318 aa25.6■■□□□ 1.69
COL9A3-203ENST00000462700 RREB1Q92766 1687 aa25.6■■□□□ 1.69
COL9A3-203ENST00000462700 IGSF1Q8N6C5 1336 aa25.6■■□□□ 1.69
COL9A3-203ENST00000462700 CNGB1Q14028 1251 aaPredicted RBP25.59■■□□□ 1.69
COL9A3-203ENST00000462700 RGPD3A6NKT7 1758 aaPredicted RBP25.59■■□□□ 1.69
COL9A3-203ENST00000462700 RGPD4Q7Z3J3 1758 aa25.59■■□□□ 1.69
COL9A3-203ENST00000462700 MTHFSP49914 203 aa25.58■■□□□ 1.69
COL9A3-203ENST00000462700 PCDH11XQ9BZA7 1347 aa25.58■■□□□ 1.69
COL9A3-203ENST00000462700 PCDH11YQ9BZA8 1340 aa25.58■■□□□ 1.69
COL9A3-203ENST00000462700 PKD1L3Q7Z443 1732 aa25.57■■□□□ 1.68
COL9A3-203ENST00000462700 NUP188Q5SRE5 1749 aa25.54■■□□□ 1.68
COL9A3-203ENST00000462700 ZEB1P37275 1124 aaPredicted RBP25.54■■□□□ 1.68
COL9A3-203ENST00000462700 PLEKHG2Q9H7P9 1386 aa25.54■■□□□ 1.68
COL9A3-203ENST00000462700 CYP27B1O15528 508 aa25.53■■□□□ 1.68
COL9A3-203ENST00000462700 IL13P35225 146 aa25.53■■□□□ 1.68
COL9A3-203ENST00000462700 SPG7Q9UQ90 795 aa25.53■■□□□ 1.68
COL9A3-203ENST00000462700 DOT1LQ8TEK3 1739 aa25.53■■□□□ 1.68
COL9A3-203ENST00000462700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.52■■□□□ 1.681e-6■□□□□ 9.8
COL9A3-203ENST00000462700 BTAF1O14981 1849 aa25.5■■□□□ 1.67
COL9A3-203ENST00000462700 PRIM1P49642 420 aaKnown RBP25.5■■□□□ 1.67
COL9A3-203ENST00000462700 PROM2Q8N271 834 aa25.5■■□□□ 1.67
COL9A3-203ENST00000462700 PSDA5PKW4 1024 aaPredicted RBP25.49■■□□□ 1.67
COL9A3-203ENST00000462700 SYTL4Q96C24 671 aaPredicted RBP25.49■■□□□ 1.67
COL9A3-203ENST00000462700 R3HDM1Q15032 1099 aaKnown RBP25.48■■□□□ 1.67
COL9A3-203ENST00000462700 TXNRD1Q16881 649 aa25.48■■□□□ 1.67
COL9A3-203ENST00000462700 AEBP1Q8IUX7 1158 aa25.48■■□□□ 1.67
COL9A3-203ENST00000462700 KDRP35968 1356 aa25.47■■□□□ 1.67
COL9A3-203ENST00000462700 NBPF14Q5TI25 921 aa25.47■■□□□ 1.67
COL9A3-203ENST00000462700 COL3A1P02461 1466 aaPredicted RBP25.47■■□□□ 1.67
COL9A3-203ENST00000462700 DIAPH1O60610 1272 aaKnown RBP25.46■■□□□ 1.67
COL9A3-203ENST00000462700 SULT6B1Q6IMI4 303 aa25.46■■□□□ 1.67
COL9A3-203ENST00000462700 NKX1-1Q15270 411 aaPredicted RBP25.45■■□□□ 1.66
COL9A3-203ENST00000462700 PHKG2P15735 406 aa25.44■■□□□ 1.66
COL9A3-203ENST00000462700 IFNL2Q8IZJ0 200 aa25.44■■□□□ 1.66
COL9A3-203ENST00000462700 TOGARAM1Q9Y4F4 1720 aa25.43■■□□□ 1.66
COL9A3-203ENST00000462700 PLEKHO1Q53GL0 409 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-203ENST00000462700 ANO8Q9HCE9 1232 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-203ENST00000462700 PPP2R1AP30153 589 aa25.41■■□□□ 1.66
COL9A3-203ENST00000462700 AMOTQ4VCS5 1084 aa25.41■■□□□ 1.66
COL9A3-203ENST00000462700 HMOX1P09601 288 aa25.38■■□□□ 1.65
COL9A3-203ENST00000462700 DDX10Q13206 875 aaKnown RBP25.38■■□□□ 1.65
COL9A3-203ENST00000462700 CFAP53Q96M91 514 aa25.38■■□□□ 1.65
COL9A3-203ENST00000462700 ZNF530Q6P9A1 599 aaPredicted RBP25.37■■□□□ 1.65
COL9A3-203ENST00000462700 MPRIPQ6WCQ1 1025 aa25.37■■□□□ 1.65
COL9A3-203ENST00000462700 SLC27A3Q5K4L6 730 aa25.36■■□□□ 1.65
COL9A3-203ENST00000462700 LRRC4BQ9NT99 713 aa25.36■■□□□ 1.65
COL9A3-203ENST00000462700 PAPPAQ13219 1627 aa25.36■■□□□ 1.65
COL9A3-203ENST00000462700 KAT6BQ8WYB5 2073 aa25.36■■□□□ 1.65
COL9A3-203ENST00000462700 U2SURPO15042 1029 aaKnown RBP25.34■■□□□ 1.65
COL9A3-203ENST00000462700 HSP90AB1P08238 724 aaKnown RBP25.34■■□□□ 1.65
COL9A3-203ENST00000462700 STK32BQ9NY57 414 aa25.34■■□□□ 1.65
COL9A3-203ENST00000462700 LY75O60449 1722 aa25.34■■□□□ 1.65
COL9A3-203ENST00000462700 SRCAPQ6ZRS2 3230 aa25.33■■□□□ 1.65
COL9A3-203ENST00000462700 PIGBQ92521 554 aa25.33■■□□□ 1.65
COL9A3-203ENST00000462700 DCAF5Q96JK2 942 aa25.33■■□□□ 1.65
COL9A3-203ENST00000462700 ITGB4P16144 1822 aa25.33■■□□□ 1.64
COL9A3-203ENST00000462700 SLC15A2Q16348 729 aa25.32■■□□□ 1.64
COL9A3-203ENST00000462700 C1orf141Q5JVX7 400 aa25.32■■□□□ 1.64
COL9A3-203ENST00000462700 TMOD3Q9NYL9 352 aa25.32■■□□□ 1.64
COL9A3-203ENST00000462700 PALLDQ8WX93 1383 aa25.31■■□□□ 1.64
COL9A3-203ENST00000462700 KDM6AO15550 1401 aaPredicted RBP25.31■■□□□ 1.64
COL9A3-203ENST00000462700 LRP5O75197 1615 aa25.3■■□□□ 1.64
COL9A3-203ENST00000462700 KCNQ4P56696 695 aa25.3■■□□□ 1.64
COL9A3-203ENST00000462700 CCNL1Q9UK58 526 aaPredicted RBP25.3■■□□□ 1.64
COL9A3-203ENST00000462700 ERVV-2B6SEH9 535 aa25.29■■□□□ 1.64
COL9A3-203ENST00000462700 ZNF827Q17R98 1081 aa25.28■■□□□ 1.64
COL9A3-203ENST00000462700 SMARCC1Q92922 1105 aaPredicted RBP25.28■■□□□ 1.64
COL9A3-203ENST00000462700 NUDCQ9Y266 331 aa25.28■■□□□ 1.64
COL9A3-203ENST00000462700 AKAP4Q5JQC9 854 aa25.27■■□□□ 1.64
COL9A3-203ENST00000462700 RALBP1Q15311 655 aa25.26■■□□□ 1.63
COL9A3-203ENST00000462700 MTHFSDQ2M296 383 aaKnown RBP25.26■■□□□ 1.63
COL9A3-203ENST00000462700 AKT1S1Q96B36 256 aa25.26■■□□□ 1.63
COL9A3-203ENST00000462700 CASZ1Q86V15 1759 aa25.26■■□□□ 1.63
COL9A3-203ENST00000462700 PDGFDQ9GZP0 370 aaPredicted RBP25.24■■□□□ 1.63
COL9A3-203ENST00000462700 ASAP1Q9ULH1 1129 aa25.24■■□□□ 1.63
COL9A3-203ENST00000462700 CABP4P57796 275 aa25.23■■□□□ 1.63
COL9A3-203ENST00000462700 RSPH6AQ9H0K4 717 aa25.23■■□□□ 1.63
COL9A3-203ENST00000462700 U2AF1L5P0DN76 240 aaPredicted RBP25.22■■□□□ 1.63
COL9A3-203ENST00000462700 U2AF1Q01081 240 aaKnown RBP eCLIP25.22■■□□□ 1.63
COL9A3-203ENST00000462700 ATG3Q9NT62 314 aa25.22■■□□□ 1.63
COL9A3-203ENST00000462700 PRKAR2BP31323 418 aa25.21■■□□□ 1.63
COL9A3-203ENST00000462700 LOC102724428A0A0B4J2F2 783 aa25.19■■□□□ 1.62
COL9A3-203ENST00000462700 SIK1P57059 783 aa25.19■■□□□ 1.62
COL9A3-203ENST00000462700 GAS2L2Q8NHY3 880 aa25.19■■□□□ 1.62
COL9A3-203ENST00000462700 C5P01031 1676 aa25.19■■□□□ 1.62
COL9A3-203ENST00000462700 SCN11AQ9UI33 1791 aa25.18■■□□□ 1.62
COL9A3-203ENST00000462700 RNMTO43148 476 aaKnown RBP25.18■■□□□ 1.62
COL9A3-203ENST00000462700 HMGB2P26583 209 aaKnown RBP25.18■■□□□ 1.62
COL9A3-203ENST00000462700 NFATC2IPQ8NCF5 419 aa25.18■■□□□ 1.62
COL9A3-203ENST00000462700 LGR6Q9HBX8 967 aa25.18■■□□□ 1.62
COL9A3-203ENST00000462700 SPON1Q9HCB6 807 aa25.18■■□□□ 1.62
COL9A3-203ENST00000462700 ADAMTS7Q9UKP4 1686 aa25.17■■□□□ 1.62
COL9A3-203ENST00000462700 MRC1P22897 1456 aa25.17■■□□□ 1.62
COL9A3-203ENST00000462700 FCHSD2O94868 740 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms