RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 ZCRB1Q8TBF4 217 aaKnown RBP10.31□□□□□ -0.76
USP4-207ENST00000462673 EYA1Q99502 592 aa10.31□□□□□ -0.76
USP4-207ENST00000462673 PLEKHG2Q9H7P9 1386 aa10.3□□□□□ -0.76
USP4-207ENST00000462673 HSP90AB1P08238 724 aaKnown RBP10.3□□□□□ -0.76
USP4-207ENST00000462673 IL13P35225 146 aa10.3□□□□□ -0.76
USP4-207ENST00000462673 FAM208AQ9UK61 1670 aaKnown RBP10.29□□□□□ -0.76
USP4-207ENST00000462673 FCHSD2O94868 740 aa10.29□□□□□ -0.76
USP4-207ENST00000462673 U2AF1L5P0DN76 240 aaPredicted RBP10.29□□□□□ -0.76
USP4-207ENST00000462673 U2AF1Q01081 240 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP4-207ENST00000462673 SULT6B1Q6IMI4 303 aa10.29□□□□□ -0.76
USP4-207ENST00000462673 NRAPQ86VF7 1730 aa10.29□□□□□ -0.76
USP4-207ENST00000462673 WDR43Q15061 677 aaKnown RBP eCLIP10.28□□□□□ -0.76
USP4-207ENST00000462673 C1orf141Q5JVX7 400 aa10.28□□□□□ -0.76
USP4-207ENST00000462673 DDX54Q8TDD1 881 aaKnown RBP10.28□□□□□ -0.76
USP4-207ENST00000462673 IGSF1Q8N6C5 1336 aa10.28□□□□□ -0.76
USP4-207ENST00000462673 OVOS2A0A0G2JMS6 1433 aa10.27□□□□□ -0.77
USP4-207ENST00000462673 ILDR2Q71H61 639 aa10.27□□□□□ -0.77
USP4-207ENST00000462673 IFNL2Q8IZJ0 200 aa10.27□□□□□ -0.77
USP4-207ENST00000462673 PCDH11XQ9BZA7 1347 aa10.27□□□□□ -0.77
USP4-207ENST00000462673 PCDH11YQ9BZA8 1340 aa10.27□□□□□ -0.77
USP4-207ENST00000462673 GLI3P10071 1580 aa10.26□□□□□ -0.77
USP4-207ENST00000462673 RGPD5Q99666 1765 aa10.26□□□□□ -0.77
USP4-207ENST00000462673 SOCS7O14512 581 aa10.26□□□□□ -0.77
USP4-207ENST00000462673 USHBP1Q8N6Y0 703 aa10.26□□□□□ -0.77
USP4-207ENST00000462673 RGS12O14924 1447 aa10.25□□□□□ -0.77
USP4-207ENST00000462673 GAS2L2Q8NHY3 880 aa10.25□□□□□ -0.77
USP4-207ENST00000462673 RBM19Q9Y4C8 960 aaKnown RBP10.25□□□□□ -0.77
USP4-207ENST00000462673 HMOX1P09601 288 aa10.24□□□□□ -0.77
USP4-207ENST00000462673 FANCIQ9NVI1 1328 aa10.24□□□□□ -0.77
USP4-207ENST00000462673 MAPK8IP3Q9UPT6 1336 aa10.24□□□□□ -0.77
USP4-207ENST00000462673 BAG6P46379 1132 aa10.23□□□□□ -0.77
USP4-207ENST00000462673 AKAP4Q5JQC9 854 aa10.23□□□□□ -0.77
USP4-207ENST00000462673 ERICH6Q7L0X2 663 aa10.23□□□□□ -0.77
USP4-207ENST00000462673 MARCH10Q8NA82 808 aaPredicted RBP10.23□□□□□ -0.77
USP4-207ENST00000462673 RTF1Q92541 710 aaKnown RBP10.23□□□□□ -0.77
USP4-207ENST00000462673 DCAF5Q96JK2 942 aa10.23□□□□□ -0.77
USP4-207ENST00000462673 BCL11BQ9C0K0 894 aaPredicted RBP10.23□□□□□ -0.77
USP4-207ENST00000462673 PEAK1Q9H792 1746 aa10.23□□□□□ -0.77
USP4-207ENST00000462673 KDRP35968 1356 aa10.23□□□□□ -0.77
USP4-207ENST00000462673 DISP2A7MBM2 1401 aa10.23□□□□□ -0.77
USP4-207ENST00000462673 NKX1-1Q15270 411 aaPredicted RBP10.22□□□□□ -0.77
USP4-207ENST00000462673 BCL9O00512 1426 aa10.22□□□□□ -0.77
USP4-207ENST00000462673 ERVV-2B6SEH9 535 aa10.21□□□□□ -0.77
USP4-207ENST00000462673 HTATSF1O43719 755 aaKnown RBP10.21□□□□□ -0.77
USP4-207ENST00000462673 APBA3O96018 575 aa10.21□□□□□ -0.77
USP4-207ENST00000462673 ZNF530Q6P9A1 599 aaPredicted RBP10.21□□□□□ -0.77
USP4-207ENST00000462673 UPF1Q92900 1129 aaKnown RBP eCLIP10.21□□□□□ -0.77
USP4-207ENST00000462673 SYTL4Q96C24 671 aaPredicted RBP10.21□□□□□ -0.77
USP4-207ENST00000462673 MRS2Q9HD23 443 aa10.21□□□□□ -0.77
USP4-207ENST00000462673 NCAPD2Q15021 1401 aa10.21□□□□□ -0.78
USP4-207ENST00000462673 TNS2Q63HR2 1409 aa10.21□□□□□ -0.78
USP4-207ENST00000462673 PARP4Q9UKK3 1724 aaKnown RBP10.21□□□□□ -0.78
USP4-207ENST00000462673 GNAT3A8MTJ3 354 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 PLSCR1O15162 318 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 TRIM37O94972 964 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 PHKG2P15735 406 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 PRKAR2BP31323 418 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 LMOD3Q0VAK6 560 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 ERICH6BQ5W0A0 696 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 AEBP1Q8IUX7 1158 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 THSD7AQ9UPZ6 1657 aa10.2□□□□□ -0.78
USP4-207ENST00000462673 CABP4P57796 275 aa10.19□□□□□ -0.78
USP4-207ENST00000462673 FAM182BQ5T319 152 aa10.19□□□□□ -0.78
USP4-207ENST00000462673 SMARCC1Q92922 1105 aaPredicted RBP10.19□□□□□ -0.78
USP4-207ENST00000462673 RUNDC1Q96C34 613 aa10.19□□□□□ -0.78
USP4-207ENST00000462673 RSPH6AQ9H0K4 717 aa10.19□□□□□ -0.78
USP4-207ENST00000462673 TMOD3Q9NYL9 352 aa10.19□□□□□ -0.78
USP4-207ENST00000462673 CYP27B1O15528 508 aa10.18□□□□□ -0.78
USP4-207ENST00000462673 PRIM1P49642 420 aaKnown RBP10.18□□□□□ -0.78
USP4-207ENST00000462673 MTHFSDQ2M296 383 aaKnown RBP10.18□□□□□ -0.78
USP4-207ENST00000462673 MPRIPQ6WCQ1 1025 aa10.18□□□□□ -0.78
USP4-207ENST00000462673 ADAMTS8Q9UP79 889 aa10.18□□□□□ -0.78
USP4-207ENST00000462673 MEGF6O75095 1541 aa10.17□□□□□ -0.78
USP4-207ENST00000462673 TEFQ10587 303 aa10.17□□□□□ -0.78
USP4-207ENST00000462673 NBPF14Q5TI25 921 aa10.17□□□□□ -0.78
USP4-207ENST00000462673 NGEFQ8N5V2 710 aa10.17□□□□□ -0.78
USP4-207ENST00000462673 ACSBG1Q96GR2 724 aa10.17□□□□□ -0.78
USP4-207ENST00000462673 CALD1Q05682 793 aaKnown RBP10.16□□□□□ -0.78
USP4-207ENST00000462673 PNISRQ8TF01 805 aaKnown RBP10.16□□□□□ -0.78
USP4-207ENST00000462673 BRWD3Q6RI45 1802 aa10.16□□□□□ -0.78
USP4-207ENST00000462673 RGPD2P0DJD1 1756 aa10.16□□□□□ -0.78
USP4-207ENST00000462673 COL3A1P02461 1466 aaPredicted RBP10.16□□□□□ -0.78
USP4-207ENST00000462673 RIPK4P57078 832 aa10.15□□□□□ -0.78
USP4-207ENST00000462673 NFE2L2Q16236 605 aa10.15□□□□□ -0.78
USP4-207ENST00000462673 NCBP3Q53F19 620 aaKnown RBP10.15□□□□□ -0.78
USP4-207ENST00000462673 SLC27A3Q5K4L6 730 aa10.15□□□□□ -0.78
USP4-207ENST00000462673 PHACTR3Q96KR7 559 aa10.15□□□□□ -0.78
USP4-207ENST00000462673 PLEKHF1Q96S99 279 aa10.15□□□□□ -0.78
USP4-207ENST00000462673 LRRC37A3O60309 1634 aa10.15□□□□□ -0.79
USP4-207ENST00000462673 RNMTO43148 476 aaKnown RBP10.14□□□□□ -0.79
USP4-207ENST00000462673 NFATC2IPQ8NCF5 419 aa10.14□□□□□ -0.79
USP4-207ENST00000462673 MAP3K5Q99683 1374 aa10.14□□□□□ -0.79
USP4-207ENST00000462673 RGPD1P0DJD0 1748 aa10.13□□□□□ -0.79
USP4-207ENST00000462673 WNK3Q9BYP7 1800 aa10.13□□□□□ -0.79
USP4-207ENST00000462673 KCNQ2O43526 872 aa10.13□□□□□ -0.79
USP4-207ENST00000462673 EN1Q05925 392 aaPredicted RBP10.13□□□□□ -0.79
USP4-207ENST00000462673 FAM9BQ8IZU0 186 aa10.13□□□□□ -0.79
USP4-207ENST00000462673 TTC5Q8N0Z6 440 aa10.13□□□□□ -0.79
USP4-207ENST00000462673 CHMP4AQ9BY43 222 aa10.13□□□□□ -0.79
USP4-207ENST00000462673 SLC52A2Q9HAB3 445 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms