RNA–Protein interactions for RNA: ENST00000460925.1

SF3A3-202, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 793 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-202ENST00000460925 SH3BP5LQ7L8J4 393 aa7.55□□□□□ -1.2
SF3A3-202ENST00000460925 USP17L1Q7RTZ2 530 aa7.55□□□□□ -1.2
SF3A3-202ENST00000460925 FAM174AQ8TBP5 190 aa7.55□□□□□ -1.2
SF3A3-202ENST00000460925 KDM5BQ9UGL1 1544 aa7.55□□□□□ -1.2
SF3A3-202ENST00000460925 CCDC18Q5T9S5 1454 aa7.55□□□□□ -1.2
SF3A3-202ENST00000460925 SKIP12755 728 aa7.54□□□□□ -1.2
SF3A3-202ENST00000460925 CDCA8Q53HL2 280 aa7.54□□□□□ -1.2
SF3A3-202ENST00000460925 MTRQ99707 1265 aa7.54□□□□□ -1.2
SF3A3-202ENST00000460925 UNC93B1Q9H1C4 597 aa7.54□□□□□ -1.2
SF3A3-202ENST00000460925 FAM196BA6NMK8 535 aa7.53□□□□□ -1.2
SF3A3-202ENST00000460925 GZF1Q9H116 711 aaPredicted RBP7.53□□□□□ -1.2
SF3A3-202ENST00000460925 IL21Q9HBE4 155 aa7.53□□□□□ -1.2
SF3A3-202ENST00000460925 TTC37Q6PGP7 1564 aa7.53□□□□□ -1.2
SF3A3-202ENST00000460925 ASXL2Q76L83 1435 aa7.52□□□□□ -1.2
SF3A3-202ENST00000460925 EHBP1L1Q8N3D4 1523 aa7.52□□□□□ -1.2
SF3A3-202ENST00000460925 POTEMA6NI47 508 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 TLL1O43897 1013 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 MAP7D1Q3KQU3 841 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 SLFNL1Q499Z3 407 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 TJAP1Q5JTD0 557 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 TMCO4Q5TGY1 634 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 SH3RF1Q7Z6J0 888 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 ADAM32Q8TC27 787 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 KCTD12Q96CX2 325 aaKnown RBP7.52□□□□□ -1.21
SF3A3-202ENST00000460925 ARHGAP9Q9BRR9 750 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 BCL11AQ9H165 835 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 ZMIZ1Q9ULJ6 1067 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 KIF13AQ9H1H9 1805 aa7.52□□□□□ -1.21
SF3A3-202ENST00000460925 TSPOAP1O95153 1857 aa7.51□□□□□ -1.21
SF3A3-202ENST00000460925 LRRC9Q6ZRR7 1453 aa7.51□□□□□ -1.21
SF3A3-202ENST00000460925 PTCRAQ6ISU1 281 aaPredicted RBP7.51□□□□□ -1.21
SF3A3-202ENST00000460925 B4GALNT3Q6L9W6 998 aa7.51□□□□□ -1.21
SF3A3-202ENST00000460925 NPM2Q86SE8 214 aaKnown RBP7.51□□□□□ -1.21
SF3A3-202ENST00000460925 RNF135Q8IUD6 432 aa7.51□□□□□ -1.21
SF3A3-202ENST00000460925 SLC6A16Q9GZN6 736 aa7.51□□□□□ -1.21
SF3A3-202ENST00000460925 PCDHB9Q9Y5E1 797 aa7.51□□□□□ -1.21
SF3A3-202ENST00000460925 WDR7Q9Y4E6 1490 aa7.5□□□□□ -1.21
SF3A3-202ENST00000460925 SUPT6HQ7KZ85 1726 aaKnown RBP7.5□□□□□ -1.21
SF3A3-202ENST00000460925 MTUS2Q5JR59 1369 aa7.5□□□□□ -1.21
SF3A3-202ENST00000460925 CARNS1A5YM72 827 aa7.5□□□□□ -1.21
SF3A3-202ENST00000460925 ATP5J2-PTCD1G3V325 749 aa7.5□□□□□ -1.21
SF3A3-202ENST00000460925 PLPP7Q8NBV4 271 aa7.5□□□□□ -1.21
SF3A3-202ENST00000460925 MKRN1Q9UHC7 482 aaKnown RBP7.5□□□□□ -1.21
SF3A3-202ENST00000460925 GNEQ9Y223 722 aaKnown RBP7.5□□□□□ -1.21
SF3A3-202ENST00000460925 DIP2BQ9P265 1576 aa7.5□□□□□ -1.21
SF3A3-202ENST00000460925 CDC42BPAQ5VT25 1732 aa7.49□□□□□ -1.21
SF3A3-202ENST00000460925 MAPKBP1O60336 1514 aa7.49□□□□□ -1.21
SF3A3-202ENST00000460925 MAP3K1Q13233 1512 aa7.49□□□□□ -1.21
SF3A3-202ENST00000460925 PTK7Q13308 1070 aa7.49□□□□□ -1.21
SF3A3-202ENST00000460925 NCOA4Q13772 614 aa7.49□□□□□ -1.21
SF3A3-202ENST00000460925 TMEM164Q5U3C3 297 aa7.49□□□□□ -1.21
SF3A3-202ENST00000460925 TRAF7Q6Q0C0 670 aa7.49□□□□□ -1.21
SF3A3-202ENST00000460925 ZBTB33Q86T24 672 aa7.49□□□□□ -1.21
SF3A3-202ENST00000460925 NOVA2Q9UNW9 492 aaKnown RBP7.49□□□□□ -1.21
SF3A3-202ENST00000460925 TROQ12816 1431 aaPredicted RBP7.49□□□□□ -1.21
SF3A3-202ENST00000460925 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L15C9J2P7 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L10C9JJH3 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L13C9JLJ4 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L12C9JPN9 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L11C9JVI0 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L21D6R901 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L18D6R9N7 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L22D6RA61 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L17D6RBQ6 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L19D6RCP7 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L20D6RJB6 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 USP17L24Q0WX57 530 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 CRTC2Q53ET0 693 aaPredicted RBP7.48□□□□□ -1.21
SF3A3-202ENST00000460925 BPHLQ86WA6 291 aaPredicted RBP7.48□□□□□ -1.21
SF3A3-202ENST00000460925 DEPDC4Q8N2C3 294 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 CCDC24Q8N4L8 307 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 RGS22Q8NE09 1264 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 STK32AQ8WU08 396 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 ZNF516Q92618 1163 aa7.48□□□□□ -1.21
SF3A3-202ENST00000460925 MYO5CQ9NQX4 1742 aa7.47□□□□□ -1.21
SF3A3-202ENST00000460925 CDC42BPBQ9Y5S2 1711 aa7.47□□□□□ -1.21
SF3A3-202ENST00000460925 MFAP1P55081 439 aaKnown RBP7.47□□□□□ -1.21
SF3A3-202ENST00000460925 EML3Q32P44 896 aa7.47□□□□□ -1.21
SF3A3-202ENST00000460925 LARP1Q6PKG0 1096 aaKnown RBP7.47□□□□□ -1.21
SF3A3-202ENST00000460925 DZIP3Q86Y13 1208 aaKnown RBP7.47□□□□□ -1.21
SF3A3-202ENST00000460925 CDCA7Q9BWT1 371 aaPredicted RBP7.47□□□□□ -1.21
SF3A3-202ENST00000460925 IVNS1ABPQ9Y6Y0 642 aa7.47□□□□□ -1.21
SF3A3-202ENST00000460925 NCOA2Q15596 1464 aa7.47□□□□□ -1.21
SF3A3-202ENST00000460925 PHLDB1Q86UU1 1377 aa7.46□□□□□ -1.21
SF3A3-202ENST00000460925 PREX2Q70Z35 1606 aa7.46□□□□□ -1.21
SF3A3-202ENST00000460925 ABCA9Q8IUA7 1624 aa7.46□□□□□ -1.21
SF3A3-202ENST00000460925 RASA1P20936 1047 aa7.46□□□□□ -1.22
SF3A3-202ENST00000460925 TRIM50Q86XT4 487 aa7.46□□□□□ -1.22
SF3A3-202ENST00000460925 CCDC125Q86Z20 511 aa7.46□□□□□ -1.22
SF3A3-202ENST00000460925 ZNF511Q8NB15 262 aa7.46□□□□□ -1.22
SF3A3-202ENST00000460925 BAP1Q92560 729 aa7.46□□□□□ -1.22
SF3A3-202ENST00000460925 CLP1Q92989 425 aaKnown RBP7.46□□□□□ -1.22
SF3A3-202ENST00000460925 C1QTNF2Q9BXJ5 285 aa7.46□□□□□ -1.22
SF3A3-202ENST00000460925 ABCC10Q5T3U5 1492 aa7.46□□□□□ -1.22
SF3A3-202ENST00000460925 PPRC1Q5VV67 1664 aaKnown RBP7.46□□□□□ -1.22
SF3A3-202ENST00000460925 MAP3K4Q9Y6R4 1608 aa7.45□□□□□ -1.22
SF3A3-202ENST00000460925 ITSN2Q9NZM3 1697 aa7.45□□□□□ -1.22
SF3A3-202ENST00000460925 PLEKHD1A6NEE1 506 aa7.45□□□□□ -1.22
SF3A3-202ENST00000460925 ATP1A2P50993 1020 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms