RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 KCNQ2O43526 872 aa25.42■■□□□ 1.66
USP39-209ENST00000458268 EIF4A2Q14240 407 aaKnown RBP25.42■■□□□ 1.66
USP39-209ENST00000458268 BCL11BQ9C0K0 894 aaPredicted RBP25.42■■□□□ 1.66
USP39-209ENST00000458268 SYTL4Q96C24 671 aaPredicted RBP25.41■■□□□ 1.66
USP39-209ENST00000458268 EYA1Q99502 592 aa25.41■■□□□ 1.66
USP39-209ENST00000458268 DOT1LQ8TEK3 1739 aa25.4■■□□□ 1.66
USP39-209ENST00000458268 RREB1Q92766 1687 aa25.4■■□□□ 1.66
USP39-209ENST00000458268 PER1O15534 1290 aaPredicted RBP25.4■■□□□ 1.66
USP39-209ENST00000458268 NUP188Q5SRE5 1749 aa25.39■■□□□ 1.65
USP39-209ENST00000458268 BTAF1O14981 1849 aa25.37■■□□□ 1.65
USP39-209ENST00000458268 BCL9O00512 1426 aa25.37■■□□□ 1.65
USP39-209ENST00000458268 PARD3Q8TEW0 1356 aa25.36■■□□□ 1.65
USP39-209ENST00000458268 R3HDM1Q15032 1099 aaKnown RBP25.36■■□□□ 1.65
USP39-209ENST00000458268 PCDH11XQ9BZA7 1347 aa25.34■■□□□ 1.65
USP39-209ENST00000458268 PCDH11YQ9BZA8 1340 aa25.34■■□□□ 1.65
USP39-209ENST00000458268 MTHFSP49914 203 aa25.33■■□□□ 1.65
USP39-209ENST00000458268 PKD1L3Q7Z443 1732 aa25.33■■□□□ 1.65
USP39-209ENST00000458268 RGPD3A6NKT7 1758 aaPredicted RBP25.33■■□□□ 1.65
USP39-209ENST00000458268 RGPD4Q7Z3J3 1758 aa25.33■■□□□ 1.65
USP39-209ENST00000458268 PRIM1P49642 420 aaKnown RBP25.31■■□□□ 1.64
USP39-209ENST00000458268 NBPF14Q5TI25 921 aa25.31■■□□□ 1.64
USP39-209ENST00000458268 PLSCR1O15162 318 aa25.3■■□□□ 1.64
USP39-209ENST00000458268 SPG7Q9UQ90 795 aa25.3■■□□□ 1.64
USP39-209ENST00000458268 NCAPD2Q15021 1401 aa25.29■■□□□ 1.64
USP39-209ENST00000458268 IGSF1Q8N6C5 1336 aa25.29■■□□□ 1.64
USP39-209ENST00000458268 CYP27B1O15528 508 aa25.27■■□□□ 1.64
USP39-209ENST00000458268 TXNRD1Q16881 649 aa25.27■■□□□ 1.64
USP39-209ENST00000458268 AEBP1Q8IUX7 1158 aa25.27■■□□□ 1.64
USP39-209ENST00000458268 NPC1L1Q9UHC9 1359 aa25.26■■□□□ 1.63
USP39-209ENST00000458268 SULT6B1Q6IMI4 303 aa25.25■■□□□ 1.63
USP39-209ENST00000458268 TOGARAM1Q9Y4F4 1720 aa25.24■■□□□ 1.63
USP39-209ENST00000458268 IL13P35225 146 aa25.23■■□□□ 1.63
USP39-209ENST00000458268 PROM2Q8N271 834 aa25.23■■□□□ 1.63
USP39-209ENST00000458268 ITGB4P16144 1822 aa25.23■■□□□ 1.63
USP39-209ENST00000458268 DIAPH1O60610 1272 aaKnown RBP25.22■■□□□ 1.63
USP39-209ENST00000458268 HMOX1P09601 288 aa25.22■■□□□ 1.63
USP39-209ENST00000458268 MPRIPQ6WCQ1 1025 aa25.22■■□□□ 1.63
USP39-209ENST00000458268 ANO8Q9HCE9 1232 aaPredicted RBP25.22■■□□□ 1.63
USP39-209ENST00000458268 U2SURPO15042 1029 aaKnown RBP25.21■■□□□ 1.63
USP39-209ENST00000458268 ZEB1P37275 1124 aaPredicted RBP25.2■■□□□ 1.62
USP39-209ENST00000458268 PLEKHO1Q53GL0 409 aaPredicted RBP25.2■■□□□ 1.62
USP39-209ENST00000458268 ZNF530Q6P9A1 599 aaPredicted RBP25.2■■□□□ 1.62
USP39-209ENST00000458268 KCNQ4P56696 695 aa25.19■■□□□ 1.62
USP39-209ENST00000458268 DDX10Q13206 875 aaKnown RBP25.19■■□□□ 1.62
USP39-209ENST00000458268 IFNL2Q8IZJ0 200 aa25.19■■□□□ 1.62
USP39-209ENST00000458268 STK32BQ9NY57 414 aa25.19■■□□□ 1.62
USP39-209ENST00000458268 PHKG2P15735 406 aa25.18■■□□□ 1.62
USP39-209ENST00000458268 CFAP53Q96M91 514 aa25.17■■□□□ 1.62
USP39-209ENST00000458268 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.17■■□□□ 1.629e-7■□□□□ 8.5
USP39-209ENST00000458268 PPP2R1AP30153 589 aa25.14■■□□□ 1.62
USP39-209ENST00000458268 C1orf141Q5JVX7 400 aa25.14■■□□□ 1.62
USP39-209ENST00000458268 LY75O60449 1722 aa25.14■■□□□ 1.61
USP39-209ENST00000458268 COL3A1P02461 1466 aaPredicted RBP25.14■■□□□ 1.61
USP39-209ENST00000458268 AMOTQ4VCS5 1084 aa25.13■■□□□ 1.61
USP39-209ENST00000458268 LRRC4BQ9NT99 713 aa25.13■■□□□ 1.61
USP39-209ENST00000458268 TMOD3Q9NYL9 352 aa25.13■■□□□ 1.61
USP39-209ENST00000458268 CCNL1Q9UK58 526 aaPredicted RBP25.12■■□□□ 1.61
USP39-209ENST00000458268 KDRP35968 1356 aa25.11■■□□□ 1.61
USP39-209ENST00000458268 NKX1-1Q15270 411 aaPredicted RBP25.11■■□□□ 1.61
USP39-209ENST00000458268 PALLDQ8WX93 1383 aa25.1■■□□□ 1.61
USP39-209ENST00000458268 SLC15A2Q16348 729 aa25.1■■□□□ 1.61
USP39-209ENST00000458268 PIGBQ92521 554 aa25.1■■□□□ 1.61
USP39-209ENST00000458268 PAPPAQ13219 1627 aa25.09■■□□□ 1.61
USP39-209ENST00000458268 LRP5O75197 1615 aa25.08■■□□□ 1.61
USP39-209ENST00000458268 HSP90AB1P08238 724 aaKnown RBP25.08■■□□□ 1.61
USP39-209ENST00000458268 ZNF827Q17R98 1081 aa25.08■■□□□ 1.61
USP39-209ENST00000458268 SLC27A3Q5K4L6 730 aa25.08■■□□□ 1.61
USP39-209ENST00000458268 PDGFDQ9GZP0 370 aaPredicted RBP25.07■■□□□ 1.6
USP39-209ENST00000458268 PLEKHG2Q9H7P9 1386 aa25.06■■□□□ 1.6
USP39-209ENST00000458268 DCAF5Q96JK2 942 aa25.06■■□□□ 1.6
USP39-209ENST00000458268 VIRMAQ69YN4 1812 aaKnown RBP25.05■■□□□ 1.6
USP39-209ENST00000458268 KDM6AO15550 1401 aaPredicted RBP25.05■■□□□ 1.6
USP39-209ENST00000458268 C5P01031 1676 aa25.05■■□□□ 1.6
USP39-209ENST00000458268 ZBTB7AO95365 584 aa25.05■■□□□ 1.6
USP39-209ENST00000458268 CABP4P57796 275 aa25.05■■□□□ 1.6
USP39-209ENST00000458268 SMARCC1Q92922 1105 aaPredicted RBP25.05■■□□□ 1.6
USP39-209ENST00000458268 NUDCQ9Y266 331 aa25.05■■□□□ 1.6
USP39-209ENST00000458268 CASZ1Q86V15 1759 aa25.05■■□□□ 1.6
USP39-209ENST00000458268 TUBGCP6Q96RT7 1819 aa25.03■■□□□ 1.6
USP39-209ENST00000458268 U2AF1L5P0DN76 240 aaPredicted RBP25.03■■□□□ 1.6
USP39-209ENST00000458268 U2AF1Q01081 240 aaKnown RBP eCLIP25.03■■□□□ 1.6
USP39-209ENST00000458268 ASAP1Q9ULH1 1129 aa25.03■■□□□ 1.6
USP39-209ENST00000458268 SCN11AQ9UI33 1791 aa25.03■■□□□ 1.6
USP39-209ENST00000458268 MTHFSDQ2M296 383 aaKnown RBP25.02■■□□□ 1.6
USP39-209ENST00000458268 TFCP2L1Q9NZI6 479 aa25.02■■□□□ 1.6
USP39-209ENST00000458268 TAF1LQ8IZX4 1826 aa25.01■■□□□ 1.59
USP39-209ENST00000458268 MSH5O43196 834 aa25.01■■□□□ 1.59
USP39-209ENST00000458268 SPON1Q9HCB6 807 aa25.01■■□□□ 1.59
USP39-209ENST00000458268 ATF5Q9Y2D1 282 aaPredicted RBP25.01■■□□□ 1.59
USP39-209ENST00000458268 ERVV-2B6SEH9 535 aa25■■□□□ 1.59
USP39-209ENST00000458268 PRKAR2BP31323 418 aa25■■□□□ 1.59
USP39-209ENST00000458268 AKAP4Q5JQC9 854 aa25■■□□□ 1.59
USP39-209ENST00000458268 RBM42Q9BTD8 480 aaKnown RBP25■■□□□ 1.59
USP39-209ENST00000458268 PPP1R1BQ9UD71 204 aaPredicted RBP25■■□□□ 1.59
USP39-209ENST00000458268 AKT1S1Q96B36 256 aa24.99■■□□□ 1.59
USP39-209ENST00000458268 LGR6Q9HBX8 967 aa24.97■■□□□ 1.59
USP39-209ENST00000458268 ATG3Q9NT62 314 aa24.97■■□□□ 1.59
USP39-209ENST00000458268 LOC102724428A0A0B4J2F2 783 aa24.96■■□□□ 1.59
USP39-209ENST00000458268 ATP6V1AP38606 617 aa24.96■■□□□ 1.59
USP39-209ENST00000458268 SIK1P57059 783 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms