RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	CSB-PGBD3	P0DP91	1061 aa		12.19	□□□□□ -0.46
RFX3-209	ENST00000451859	PDE3B	Q13370	1112 aa		12.19	□□□□□ -0.46
RFX3-209	ENST00000451859	BARGIN	Q6ZT62	677 aa		12.19	□□□□□ -0.46
RFX3-209	ENST00000451859	TESK2	Q96S53	571 aa		12.19	□□□□□ -0.46
RFX3-209	ENST00000451859	TERF2IP	Q9NYB0	399 aa		12.19	□□□□□ -0.46
RFX3-209	ENST00000451859	COLQ	Q9Y215	455 aa	Predicted RBP	12.19	□□□□□ -0.46
RFX3-209	ENST00000451859	AXIN2	Q9Y2T1	843 aa		12.19	□□□□□ -0.46
RFX3-209	ENST00000451859	EN1	Q05925	392 aa	Predicted RBP	12.18	□□□□□ -0.46
RFX3-209	ENST00000451859	ARHGEF25	Q86VW2	580 aa		12.18	□□□□□ -0.46
RFX3-209	ENST00000451859	RASEF	Q8IZ41	740 aa		12.18	□□□□□ -0.46
RFX3-209	ENST00000451859	MYOM1	P52179	1685 aa		12.18	□□□□□ -0.46
RFX3-209	ENST00000451859	PEAK1	Q9H792	1746 aa		12.17	□□□□□ -0.46
RFX3-209	ENST00000451859	WDR17	Q8IZU2	1322 aa		12.17	□□□□□ -0.46
RFX3-209	ENST00000451859	NUP188	Q5SRE5	1749 aa		12.17	□□□□□ -0.46
RFX3-209	ENST00000451859	USP31	Q70CQ4	1352 aa		12.17	□□□□□ -0.46
RFX3-209	ENST00000451859	RREB1	Q92766	1687 aa		12.16	□□□□□ -0.46
RFX3-209	ENST00000451859	FAM196A	Q6ZSG2	479 aa		12.16	□□□□□ -0.46
RFX3-209	ENST00000451859	THRAP3	Q9Y2W1	955 aa	Known RBP	12.16	□□□□□ -0.46
RFX3-209	ENST00000451859	ABCC6	O95255	1503 aa		12.16	□□□□□ -0.46
RFX3-209	ENST00000451859	OVOS2	A0A0J9YW53	1432 aa		12.15	□□□□□ -0.46
RFX3-209	ENST00000451859	OVOS2	Q6IE36	1432 aa		12.15	□□□□□ -0.46
RFX3-209	ENST00000451859	PSD	A5PKW4	1024 aa	Predicted RBP	12.15	□□□□□ -0.46
RFX3-209	ENST00000451859	TTLL13P	A6NNM8	815 aa		12.15	□□□□□ -0.46
RFX3-209	ENST00000451859	TMF1	P82094	1093 aa		12.15	□□□□□ -0.46
RFX3-209	ENST00000451859	FAM208A	Q9UK61	1670 aa	Known RBP	12.15	□□□□□ -0.46
RFX3-209	ENST00000451859	DDB1	Q16531	1140 aa		12.14	□□□□□ -0.47
RFX3-209	ENST00000451859	CCER1	Q8TC90	406 aa	Predicted RBP	12.14	□□□□□ -0.47
RFX3-209	ENST00000451859	NINL	Q9Y2I6	1382 aa		12.14	□□□□□ -0.47
RFX3-209	ENST00000451859	OVOS2	A0A0G2JMS6	1433 aa		12.13	□□□□□ -0.47
RFX3-209	ENST00000451859	APBA3	O96018	575 aa		12.13	□□□□□ -0.47
RFX3-209	ENST00000451859	EZH2	Q15910	746 aa	Known RBP	12.13	□□□□□ -0.47
RFX3-209	ENST00000451859	PUS7	Q96PZ0	661 aa	Known RBP	12.13	□□□□□ -0.47
RFX3-209	ENST00000451859	CLSPN	Q9HAW4	1339 aa		12.12	□□□□□ -0.47
RFX3-209	ENST00000451859	POLR3GL	Q9BT43	218 aa		12.12	□□□□□ -0.47
RFX3-209	ENST00000451859	CARD10	Q9BWT7	1032 aa		12.12	□□□□□ -0.47
RFX3-209	ENST00000451859	NLRP2	Q9NX02	1062 aa		12.12	□□□□□ -0.47
RFX3-209	ENST00000451859	ANKRD36B	Q8N2N9	1353 aa		12.12	□□□□□ -0.47
RFX3-209	ENST00000451859	DISP2	A7MBM2	1401 aa		12.11	□□□□□ -0.47
RFX3-209	ENST00000451859	SLC24A1	O60721	1099 aa		12.11	□□□□□ -0.47
RFX3-209	ENST00000451859	LTV1	Q96GA3	475 aa	Predicted RBP	12.11	□□□□□ -0.47
RFX3-209	ENST00000451859	COG3	Q96JB2	828 aa		12.11	□□□□□ -0.47
RFX3-209	ENST00000451859	RGPD3	A6NKT7	1758 aa	Predicted RBP	12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	RGPD4	Q7Z3J3	1758 aa		12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	CCDC7	Q96M83	1385 aa		12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	MAP2	P11137	1827 aa	Known RBP	12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	FBLN1	P23142	703 aa		12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	ANKRD24	Q8TF21	1146 aa		12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	TIMELESS	Q9UNS1	1208 aa		12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	LRP5	O75197	1615 aa		12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	ERBB3	P21860	1342 aa		12.1	□□□□□ -0.47
RFX3-209	ENST00000451859	R3HDM1	Q15032	1099 aa	Known RBP	12.09	□□□□□ -0.47
RFX3-209	ENST00000451859	CDCA7	Q9BWT1	371 aa	Predicted RBP	12.09	□□□□□ -0.47
RFX3-209	ENST00000451859	GGNBP2	Q9H3C7	697 aa		12.09	□□□□□ -0.47
RFX3-209	ENST00000451859	TNS2	Q63HR2	1409 aa		12.09	□□□□□ -0.47
RFX3-209	ENST00000451859	NHS	Q6T4R5	1651 aa		12.09	□□□□□ -0.47
RFX3-209	ENST00000451859	BTAF1	O14981	1849 aa		12.09	□□□□□ -0.47
RFX3-209	ENST00000451859	CDCA8	Q53HL2	280 aa		12.08	□□□□□ -0.48
RFX3-209	ENST00000451859	MARCH10	Q8NA82	808 aa	Predicted RBP	12.08	□□□□□ -0.48
RFX3-209	ENST00000451859	CAMKK2	Q96RR4	588 aa		12.08	□□□□□ -0.48
RFX3-209	ENST00000451859	SHANK3	Q9BYB0	1731 aa		12.08	□□□□□ -0.48
RFX3-209	ENST00000451859	ANKRD26	Q9UPS8	1709 aa		12.08	□□□□□ -0.48
RFX3-209	ENST00000451859	EXOC5	O00471	708 aa		12.07	□□□□□ -0.48
RFX3-209	ENST00000451859	SEC24B	O95487	1268 aa		12.07	□□□□□ -0.48
RFX3-209	ENST00000451859	AMPH	P49418	695 aa		12.07	□□□□□ -0.48
RFX3-209	ENST00000451859	PTF1A	Q7RTS3	328 aa		12.07	□□□□□ -0.48
RFX3-209	ENST00000451859	MAP3K19	Q56UN5	1328 aa		12.07	□□□□□ -0.48
RFX3-209	ENST00000451859	PARD3	Q8TEW0	1356 aa		12.06	□□□□□ -0.48
RFX3-209	ENST00000451859	DOT1L	Q8TEK3	1739 aa		12.06	□□□□□ -0.48
RFX3-209	ENST00000451859	NSD3	Q9BZ95	1437 aa		12.06	□□□□□ -0.48
RFX3-209	ENST00000451859	RRS1	Q15050	365 aa	Known RBP	12.06	□□□□□ -0.48
RFX3-209	ENST00000451859	MIER1	Q8N108	512 aa		12.06	□□□□□ -0.48
RFX3-209	ENST00000451859	IP6K1	Q92551	441 aa		12.06	□□□□□ -0.48
RFX3-209	ENST00000451859	FYB1	O15117	783 aa		12.05	□□□□□ -0.48
RFX3-209	ENST00000451859	IL2RB	P14784	551 aa		12.05	□□□□□ -0.48
RFX3-209	ENST00000451859	HOXC9	P31274	260 aa		12.05	□□□□□ -0.48
RFX3-209	ENST00000451859	IER5L	Q5T953	404 aa		12.05	□□□□□ -0.48
RFX3-209	ENST00000451859	CDAN1	Q8IWY9	1227 aa		12.05	□□□□□ -0.48
RFX3-209	ENST00000451859	TRIM35	Q9UPQ4	493 aa		12.05	□□□□□ -0.48
RFX3-209	ENST00000451859	C11orf95	C9JLR9	678 aa	Predicted RBP	12.04	□□□□□ -0.48
RFX3-209	ENST00000451859	ACSBG1	Q96GR2	724 aa		12.04	□□□□□ -0.48
RFX3-209	ENST00000451859	HSPA5	P11021	654 aa	Known RBP	12.03	□□□□□ -0.48
RFX3-209	ENST00000451859	SGIP1	Q9BQI5	828 aa		12.03	□□□□□ -0.48
RFX3-209	ENST00000451859	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.03	□□□□□ -0.48
RFX3-209	ENST00000451859	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.02	□□□□□ -0.49
RFX3-209	ENST00000451859	USHBP1	Q8N6Y0	703 aa		12.02	□□□□□ -0.49
RFX3-209	ENST00000451859	CARD14	Q9BXL6	1004 aa		12.02	□□□□□ -0.49
RFX3-209	ENST00000451859	RTL1	A6NKG5	1358 aa		12.02	□□□□□ -0.49
RFX3-209	ENST00000451859	KCNQ2	O43526	872 aa		12.01	□□□□□ -0.49
RFX3-209	ENST00000451859	NBPF14	Q5TI25	921 aa		12.01	□□□□□ -0.49
RFX3-209	ENST00000451859	DDX54	Q8TDD1	881 aa	Known RBP	12.01	□□□□□ -0.49
RFX3-209	ENST00000451859	SMG6	Q86US8	1419 aa	Known RBP	12.01	□□□□□ -0.49
RFX3-209	ENST00000451859	MEGF6	O75095	1541 aa		12.01	□□□□□ -0.49
RFX3-209	ENST00000451859	CASZ1	Q86V15	1759 aa		12	□□□□□ -0.49
RFX3-209	ENST00000451859	PPM1G	O15355	546 aa	Predicted RBP	12	□□□□□ -0.49
RFX3-209	ENST00000451859	PCDHB13	Q9Y5F0	798 aa		12	□□□□□ -0.49
RFX3-209	ENST00000451859	BCL9	O00512	1426 aa		12	□□□□□ -0.49
RFX3-209	ENST00000451859	EMILIN1	Q9Y6C2	1016 aa		11.99	□□□□□ -0.49
RFX3-209	ENST00000451859	ITGB4	P16144	1822 aa		11.99	□□□□□ -0.49
RFX3-209	ENST00000451859	TUBGCP6	Q96RT7	1819 aa		11.98	□□□□□ -0.49
RFX3-209	ENST00000451859	FLT4	P35916	1363 aa		11.98	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms