RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 SEPT12Q8IYM1 358 aa22.71■■□□□ 1.23
COL7A1-202ENST00000422991 TNS2Q63HR2 1409 aa22.71■■□□□ 1.23
COL7A1-202ENST00000422991 HMOX1P09601 288 aa22.7■■□□□ 1.22
COL7A1-202ENST00000422991 U2AF1L5P0DN76 240 aaPredicted RBP22.7■■□□□ 1.22
COL7A1-202ENST00000422991 U2AF1Q01081 240 aaKnown RBP eCLIP22.7■■□□□ 1.22
COL7A1-202ENST00000422991 RAPGEF4Q8WZA2 1011 aa22.7■■□□□ 1.22
COL7A1-202ENST00000422991 CCER2I3L3R5 266 aa22.69■■□□□ 1.22
COL7A1-202ENST00000422991 TATP17735 454 aaPredicted RBP22.68■■□□□ 1.22
COL7A1-202ENST00000422991 RSPH6AQ9H0K4 717 aa22.68■■□□□ 1.22
COL7A1-202ENST00000422991 A0A0G2JS52 829 aa22.67■■□□□ 1.22
COL7A1-202ENST00000422991 MYT1Q01538 1121 aa22.67■■□□□ 1.22
COL7A1-202ENST00000422991 WDR43Q15061 677 aaKnown RBP eCLIP22.67■■□□□ 1.22
COL7A1-202ENST00000422991 FCHSD2O94868 740 aa22.64■■□□□ 1.21
COL7A1-202ENST00000422991 DDB1Q16531 1140 aa22.64■■□□□ 1.21
COL7A1-202ENST00000422991 KRT27Q7Z3Y8 459 aa22.64■■□□□ 1.21
COL7A1-202ENST00000422991 CCDC125Q86Z20 511 aa22.64■■□□□ 1.21
COL7A1-202ENST00000422991 PNISRQ8TF01 805 aaKnown RBP22.64■■□□□ 1.21
COL7A1-202ENST00000422991 PRKAR2BP31323 418 aa22.63■■□□□ 1.21
COL7A1-202ENST00000422991 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.62■■□□□ 1.212e-9■■■□□ 16.8
COL7A1-202ENST00000422991 ADAMTS8Q9UP79 889 aa22.62■■□□□ 1.21
COL7A1-202ENST00000422991 EXOC5O00471 708 aa22.61■■□□□ 1.21
COL7A1-202ENST00000422991 ZCRB1Q8TBF4 217 aaKnown RBP22.61■■□□□ 1.21
COL7A1-202ENST00000422991 PCDH11XQ9BZA7 1347 aa22.59■■□□□ 1.21
COL7A1-202ENST00000422991 PCDH11YQ9BZA8 1340 aa22.59■■□□□ 1.21
COL7A1-202ENST00000422991 PLEKHF1Q96S99 279 aa22.59■■□□□ 1.21
COL7A1-202ENST00000422991 SPG7Q9UQ90 795 aa22.59■■□□□ 1.21
COL7A1-202ENST00000422991 AMOTQ4VCS5 1084 aa22.58■■□□□ 1.21
COL7A1-202ENST00000422991 PLEKHO1Q53GL0 409 aaPredicted RBP22.58■■□□□ 1.21
COL7A1-202ENST00000422991 PDE3BQ13370 1112 aa22.57■■□□□ 1.2
COL7A1-202ENST00000422991 PHACTR3Q96KR7 559 aa22.57■■□□□ 1.2
COL7A1-202ENST00000422991 PNNQ9H307 717 aaKnown RBP22.57■■□□□ 1.2
COL7A1-202ENST00000422991 MARCH10Q8NA82 808 aaPredicted RBP22.56■■□□□ 1.2
COL7A1-202ENST00000422991 DLG5Q8TDM6 1919 aa22.56■■□□□ 1.2
COL7A1-202ENST00000422991 VIRMAQ69YN4 1812 aaKnown RBP22.56■■□□□ 1.2
COL7A1-202ENST00000422991 CYP27B1O15528 508 aa22.55■■□□□ 1.2
COL7A1-202ENST00000422991 ZNF530Q6P9A1 599 aaPredicted RBP22.55■■□□□ 1.2
COL7A1-202ENST00000422991 DOT1LQ8TEK3 1739 aa22.54■■□□□ 1.2
COL7A1-202ENST00000422991 TOGARAM1Q9Y4F4 1720 aa22.54■■□□□ 1.2
COL7A1-202ENST00000422991 MTHFSDQ2M296 383 aaKnown RBP22.54■■□□□ 1.2
COL7A1-202ENST00000422991 CCDC146Q8IYE0 955 aa22.54■■□□□ 1.2
COL7A1-202ENST00000422991 DDX54Q8TDD1 881 aaKnown RBP22.54■■□□□ 1.2
COL7A1-202ENST00000422991 MAPK8IP3Q9UPT6 1336 aa22.54■■□□□ 1.2
COL7A1-202ENST00000422991 ADAMTS7Q9UKP4 1686 aa22.53■■□□□ 1.2
COL7A1-202ENST00000422991 SBF2Q86WG5 1849 aa22.53■■□□□ 1.2
COL7A1-202ENST00000422991 RUNDC1Q96C34 613 aa22.53■■□□□ 1.2
COL7A1-202ENST00000422991 BCL9O00512 1426 aa22.52■■□□□ 1.2
COL7A1-202ENST00000422991 NEFMP07197 916 aa22.52■■□□□ 1.2
COL7A1-202ENST00000422991 PHKG2P15735 406 aa22.52■■□□□ 1.2
COL7A1-202ENST00000422991 FAM9BQ8IZU0 186 aa22.52■■□□□ 1.2
COL7A1-202ENST00000422991 GAS2L2Q8NHY3 880 aa22.52■■□□□ 1.2
COL7A1-202ENST00000422991 SCN11AQ9UI33 1791 aa22.52■■□□□ 1.2
COL7A1-202ENST00000422991 SF3B2Q13435 895 aaKnown RBP22.51■■□□□ 1.19
COL7A1-202ENST00000422991 IFNL2Q8IZJ0 200 aa22.51■■□□□ 1.19
COL7A1-202ENST00000422991 NHSQ6T4R5 1651 aa22.5■■□□□ 1.19
COL7A1-202ENST00000422991 FAM182BQ5T319 152 aa22.5■■□□□ 1.19
COL7A1-202ENST00000422991 MAP3K5Q99683 1374 aa22.5■■□□□ 1.19
COL7A1-202ENST00000422991 C1orf141Q5JVX7 400 aa22.49■■□□□ 1.19
COL7A1-202ENST00000422991 KDM6AO15550 1401 aaPredicted RBP22.48■■□□□ 1.19
COL7A1-202ENST00000422991 NKX1-1Q15270 411 aaPredicted RBP22.48■■□□□ 1.19
COL7A1-202ENST00000422991 NFE2L2Q16236 605 aa22.48■■□□□ 1.19
COL7A1-202ENST00000422991 AKAP4Q5JQC9 854 aa22.48■■□□□ 1.19
COL7A1-202ENST00000422991 ITGB4P16144 1822 aa22.47■■□□□ 1.19
COL7A1-202ENST00000422991 HSP90AB1P08238 724 aaKnown RBP22.46■■□□□ 1.19
COL7A1-202ENST00000422991 FAM196AQ6ZSG2 479 aa22.45■■□□□ 1.18
COL7A1-202ENST00000422991 GNAT3A8MTJ3 354 aa22.44■■□□□ 1.18
COL7A1-202ENST00000422991 MRC1P22897 1456 aa22.44■■□□□ 1.18
COL7A1-202ENST00000422991 TMPOP42166 694 aaKnown RBP22.44■■□□□ 1.18
COL7A1-202ENST00000422991 DCAF5Q96JK2 942 aa22.44■■□□□ 1.18
COL7A1-202ENST00000422991 TNS1Q9HBL0 1735 aaKnown RBP22.44■■□□□ 1.18
COL7A1-202ENST00000422991 SIPA1L3O60292 1781 aaPredicted RBP22.43■■□□□ 1.18
COL7A1-202ENST00000422991 APAF1O14727 1248 aa22.43■■□□□ 1.18
COL7A1-202ENST00000422991 MPRIPQ6WCQ1 1025 aa22.42■■□□□ 1.18
COL7A1-202ENST00000422991 DEFB132Q7Z7B7 95 aa22.42■■□□□ 1.18
COL7A1-202ENST00000422991 BTAF1O14981 1849 aa22.41■■□□□ 1.18
COL7A1-202ENST00000422991 RRP7AQ9Y3A4 280 aaKnown RBP22.41■■□□□ 1.18
COL7A1-202ENST00000422991 KAT6BQ8WYB5 2073 aa22.41■■□□□ 1.18
COL7A1-202ENST00000422991 CEMIPQ8WUJ3 1361 aa22.4■■□□□ 1.18
COL7A1-202ENST00000422991 HTATSF1O43719 755 aaKnown RBP22.4■■□□□ 1.18
COL7A1-202ENST00000422991 BAG6P46379 1132 aa22.4■■□□□ 1.18
COL7A1-202ENST00000422991 RIPK4P57078 832 aa22.4■■□□□ 1.18
COL7A1-202ENST00000422991 RNMTO43148 476 aaKnown RBP22.39■■□□□ 1.17
COL7A1-202ENST00000422991 ACSBG1Q96GR2 724 aa22.39■■□□□ 1.17
COL7A1-202ENST00000422991 LGR6Q9HBX8 967 aa22.39■■□□□ 1.17
COL7A1-202ENST00000422991 NEUROD2Q15784 382 aa22.38■■□□□ 1.17
COL7A1-202ENST00000422991 IL17REQ8NFR9 667 aa22.38■■□□□ 1.17
COL7A1-202ENST00000422991 ERVV-2B6SEH9 535 aa22.37■■□□□ 1.17
COL7A1-202ENST00000422991 LMOD3Q0VAK6 560 aa22.37■■□□□ 1.17
COL7A1-202ENST00000422991 RTF1Q92541 710 aaKnown RBP22.37■■□□□ 1.17
COL7A1-202ENST00000422991 PAPPAQ13219 1627 aa22.37■■□□□ 1.17
COL7A1-202ENST00000422991 KCNQ2O43526 872 aa22.36■■□□□ 1.17
COL7A1-202ENST00000422991 TRIM37O94972 964 aa22.36■■□□□ 1.17
COL7A1-202ENST00000422991 PRIM1P49642 420 aaKnown RBP22.36■■□□□ 1.17
COL7A1-202ENST00000422991 MCM10Q7L590 875 aa22.36■■□□□ 1.17
COL7A1-202ENST00000422991 TRIM35Q9UPQ4 493 aa22.36■■□□□ 1.17
COL7A1-202ENST00000422991 DCTN1Q14203 1278 aa22.35■■□□□ 1.17
COL7A1-202ENST00000422991 SENP3-EIF4A1A0A087X0R7 540 aa22.34■■□□□ 1.17
COL7A1-202ENST00000422991 NCBP3Q53F19 620 aaKnown RBP22.34■■□□□ 1.17
COL7A1-202ENST00000422991 PTF1AQ7RTS3 328 aa22.34■■□□□ 1.17
COL7A1-202ENST00000422991 SYTL4Q96C24 671 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-202ENST00000422991 BCL11BQ9C0K0 894 aaPredicted RBP22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms