RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 PRR20AP86496 221 aa7.5□□□□□ -1.21
BRCA1-204ENST00000412061 RC3H1Q5TC82 1133 aaKnown RBP7.5□□□□□ -1.21
BRCA1-204ENST00000412061 TMEM164Q5U3C3 297 aa7.5□□□□□ -1.21
BRCA1-204ENST00000412061 STK32AQ8WU08 396 aa7.5□□□□□ -1.21
BRCA1-204ENST00000412061 TNFRSF10AO00220 468 aa7.49□□□□□ -1.21
BRCA1-204ENST00000412061 DGAT1O75907 488 aa7.49□□□□□ -1.21
BRCA1-204ENST00000412061 RAB15P59190 212 aa7.49□□□□□ -1.21
BRCA1-204ENST00000412061 KCNA1Q09470 495 aa7.49□□□□□ -1.21
BRCA1-204ENST00000412061 USP4Q13107 963 aa7.49□□□□□ -1.21
BRCA1-204ENST00000412061 ZNF697Q5TEC3 545 aa7.49□□□□□ -1.21
BRCA1-204ENST00000412061 ANKMY2Q8IV38 441 aa7.49□□□□□ -1.21
BRCA1-204ENST00000412061 FAM200AQ8TCP9 573 aa7.49□□□□□ -1.21
BRCA1-204ENST00000412061 CDCA7Q9BWT1 371 aaPredicted RBP7.49□□□□□ -1.21
BRCA1-204ENST00000412061 DNAAF2Q9NVR5 837 aaKnown RBP7.49□□□□□ -1.21
BRCA1-204ENST00000412061 GDF9O60383 454 aa7.48□□□□□ -1.21
BRCA1-204ENST00000412061 GTF2IP78347 998 aa7.48□□□□□ -1.21
BRCA1-204ENST00000412061 CLDN10P78369 228 aa7.48□□□□□ -1.21
BRCA1-204ENST00000412061 ARID5BQ14865 1188 aa7.48□□□□□ -1.21
BRCA1-204ENST00000412061 INTS6LQ5JSJ4 861 aaKnown RBP7.48□□□□□ -1.21
BRCA1-204ENST00000412061 B4GALNT3Q6L9W6 998 aa7.48□□□□□ -1.21
BRCA1-204ENST00000412061 LARGE2Q8N3Y3 721 aa7.48□□□□□ -1.21
BRCA1-204ENST00000412061 CDK15Q96Q40 435 aa7.48□□□□□ -1.21
BRCA1-204ENST00000412061 FAM187AA6NFU0 413 aa7.47□□□□□ -1.21
BRCA1-204ENST00000412061 MPNDQ8N594 471 aa7.47□□□□□ -1.21
BRCA1-204ENST00000412061 TRIM52Q96A61 297 aa7.47□□□□□ -1.21
BRCA1-204ENST00000412061 ZNF594Q96JF6 807 aaPredicted RBP7.47□□□□□ -1.21
BRCA1-204ENST00000412061 RBM19Q9Y4C8 960 aaKnown RBP7.47□□□□□ -1.21
BRCA1-204ENST00000412061 MYCP01106 439 aaPredicted RBP7.46□□□□□ -1.22
BRCA1-204ENST00000412061 DPYDQ12882 1025 aa7.46□□□□□ -1.22
BRCA1-204ENST00000412061 SIX5Q8N196 739 aa7.46□□□□□ -1.22
BRCA1-204ENST00000412061 ERVH48-1M5A8F1 160 aa7.45□□□□□ -1.22
BRCA1-204ENST00000412061 WNT7AO00755 349 aa7.45□□□□□ -1.22
BRCA1-204ENST00000412061 ST8SIA5O15466 376 aa7.45□□□□□ -1.22
BRCA1-204ENST00000412061 FSHRP23945 695 aa7.45□□□□□ -1.22
BRCA1-204ENST00000412061 PSME1Q06323 249 aa7.45□□□□□ -1.22
BRCA1-204ENST00000412061 DHX9Q08211 1270 aaKnown RBP7.45□□□□□ -1.22
BRCA1-204ENST00000412061 ZBTB7BO15156 539 aaPredicted RBP7.44□□□□□ -1.22
BRCA1-204ENST00000412061 SWI5Q1ZZU3 235 aa7.44□□□□□ -1.22
BRCA1-204ENST00000412061 CCDC102BQ68D86 513 aa7.44□□□□□ -1.22
BRCA1-204ENST00000412061 ESF1Q9H501 851 aaKnown RBP7.44□□□□□ -1.22
BRCA1-204ENST00000412061 KIAA1024Q9UPX6 916 aa7.44□□□□□ -1.22
BRCA1-204ENST00000412061 PCDHGA11Q9Y5H2 935 aa7.44□□□□□ -1.22
BRCA1-204ENST00000412061 TLL2Q9Y6L7 1015 aa7.44□□□□□ -1.22
BRCA1-204ENST00000412061 SIAH2O43255 324 aa7.43□□□□□ -1.22
BRCA1-204ENST00000412061 ADH1CP00326 375 aa7.43□□□□□ -1.22
BRCA1-204ENST00000412061 GRM5P41594 1212 aa7.43□□□□□ -1.22
BRCA1-204ENST00000412061 SEC13P55735 322 aa7.43□□□□□ -1.22
BRCA1-204ENST00000412061 TPCN2Q8NHX9 752 aa7.43□□□□□ -1.22
BRCA1-204ENST00000412061 CLP1Q92989 425 aaKnown RBP7.43□□□□□ -1.22
BRCA1-204ENST00000412061 DKK1O94907 266 aa7.42□□□□□ -1.22
BRCA1-204ENST00000412061 ERVK-9P63128 1117 aa7.42□□□□□ -1.22
BRCA1-204ENST00000412061 FAM69CQ0P6D2 419 aa7.42□□□□□ -1.22
BRCA1-204ENST00000412061 NR5A1Q13285 461 aa7.42□□□□□ -1.22
BRCA1-204ENST00000412061 CC2D2BQ6DHV5 1058 aa7.42□□□□□ -1.22
BRCA1-204ENST00000412061 MRGPRX2Q96LB1 330 aa7.42□□□□□ -1.22
BRCA1-204ENST00000412061 AAASQ9NRG9 546 aa7.42□□□□□ -1.22
BRCA1-204ENST00000412061 SCTRP47872 440 aa7.41□□□□□ -1.22
BRCA1-204ENST00000412061 LCE2AQ5TA79 106 aaPredicted RBP7.41□□□□□ -1.22
BRCA1-204ENST00000412061 CCDC116Q8IYX3 515 aa7.41□□□□□ -1.22
BRCA1-204ENST00000412061 GZF1Q9H116 711 aaPredicted RBP7.41□□□□□ -1.22
BRCA1-204ENST00000412061 PKD2L1Q9P0L9 805 aa7.41□□□□□ -1.22
BRCA1-204ENST00000412061 TMPRSS4Q9NRS4 437 aa7.4□□□□□ -1.22
BRCA1-204ENST00000412061 LOC105371045A0A1W2PR82 267 aa7.39□□□□□ -1.23
BRCA1-204ENST00000412061 SFI1A8K8P3 1242 aa7.39□□□□□ -1.23
BRCA1-204ENST00000412061 ATP2B4P23634 1241 aa7.39□□□□□ -1.23
BRCA1-204ENST00000412061 SSFA2P28290 1259 aa7.39□□□□□ -1.23
BRCA1-204ENST00000412061 FOXC1Q12948 553 aa7.39□□□□□ -1.23
BRCA1-204ENST00000412061 PPP1R26Q5T8A7 1209 aaPredicted RBP7.39□□□□□ -1.23
BRCA1-204ENST00000412061 RGS22Q8NE09 1264 aa7.39□□□□□ -1.23
BRCA1-204ENST00000412061 CYLDQ9NQC7 956 aa7.39□□□□□ -1.23
BRCA1-204ENST00000412061 IVNS1ABPQ9Y6Y0 642 aa7.39□□□□□ -1.23
BRCA1-204ENST00000412061 M0R2N6 131 aa7.38□□□□□ -1.23
BRCA1-204ENST00000412061 TMCO4Q5TGY1 634 aa7.38□□□□□ -1.23
BRCA1-204ENST00000412061 ZNF784Q8NCA9 323 aaPredicted RBP7.38□□□□□ -1.23
BRCA1-204ENST00000412061 OSBPL3Q9H4L5 887 aa7.38□□□□□ -1.23
BRCA1-204ENST00000412061 PGPEP1Q9NXJ5 209 aa7.38□□□□□ -1.23
BRCA1-204ENST00000412061 SLAIN2Q9P270 581 aa7.38□□□□□ -1.23
BRCA1-204ENST00000412061 DACH1Q9UI36 760 aa7.38□□□□□ -1.23
BRCA1-204ENST00000412061 MTMR7Q9Y216 660 aa7.38□□□□□ -1.23
BRCA1-204ENST00000412061 GNEQ9Y223 722 aaKnown RBP7.38□□□□□ -1.23
BRCA1-204ENST00000412061 EMILIN1Q9Y6C2 1016 aa7.38□□□□□ -1.23
BRCA1-204ENST00000412061 PHLDB3Q6NSJ2 640 aa7.37□□□□□ -1.23
BRCA1-204ENST00000412061 TREML4Q6UXN2 200 aa7.37□□□□□ -1.23
BRCA1-204ENST00000412061 CYP2U1Q7Z449 544 aa7.37□□□□□ -1.23
BRCA1-204ENST00000412061 CCER1Q8TC90 406 aaPredicted RBP7.37□□□□□ -1.23
BRCA1-204ENST00000412061 ALDH1A1P00352 501 aa7.36□□□□□ -1.23
BRCA1-204ENST00000412061 NR3C2P08235 984 aa7.36□□□□□ -1.23
BRCA1-204ENST00000412061 ARID4AP29374 1257 aaPredicted RBP7.36□□□□□ -1.23
BRCA1-204ENST00000412061 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.36□□□□□ -1.23
BRCA1-204ENST00000412061 HINFPQ9BQA5 517 aa7.36□□□□□ -1.23
BRCA1-204ENST00000412061 WASF2Q9Y6W5 498 aa7.36□□□□□ -1.23
BRCA1-204ENST00000412061 WASLO00401 505 aaPredicted RBP7.35□□□□□ -1.23
BRCA1-204ENST00000412061 BACH1O14867 736 aa7.35□□□□□ -1.23
BRCA1-204ENST00000412061 PRMT3O60678 531 aa7.35□□□□□ -1.23
BRCA1-204ENST00000412061 LILRA1O75019 489 aa7.35□□□□□ -1.23
BRCA1-204ENST00000412061 NNTQ13423 1086 aa7.35□□□□□ -1.23
BRCA1-204ENST00000412061 TXNDC2Q86VQ3 553 aa7.35□□□□□ -1.23
BRCA1-204ENST00000412061 C1orf216Q8TAB5 229 aa7.35□□□□□ -1.23
BRCA1-204ENST00000412061 SNIP1Q8TAD8 396 aaKnown RBP7.35□□□□□ -1.23
BRCA1-204ENST00000412061 ZNF358Q9NW07 568 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms