RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 HSP90AB2PQ58FF8 381 aa30.91■■■□□ 2.54
MSH6-202ENST00000411819 ZCRB1Q8TBF4 217 aaKnown RBP30.91■■■□□ 2.54
MSH6-202ENST00000411819 KIF24Q5T7B8 1368 aa30.91■■■□□ 2.54
MSH6-202ENST00000411819 SLC15A2Q16348 729 aa30.9■■■□□ 2.54
MSH6-202ENST00000411819 RAPGEF4Q8WZA2 1011 aa30.89■■■□□ 2.54
MSH6-202ENST00000411819 SYTL4Q96C24 671 aaPredicted RBP30.89■■■□□ 2.54
MSH6-202ENST00000411819 PDGFDQ9GZP0 370 aaPredicted RBP30.89■■■□□ 2.54
MSH6-202ENST00000411819 EMILIN1Q9Y6C2 1016 aa30.89■■■□□ 2.54
MSH6-202ENST00000411819 CGNL1Q0VF96 1302 aa30.89■■■□□ 2.54
MSH6-202ENST00000411819 PAPPAQ13219 1627 aa30.88■■■□□ 2.53
MSH6-202ENST00000411819 HSPA5P11021 654 aaKnown RBP30.88■■■□□ 2.53
MSH6-202ENST00000411819 ZBTB7AO95365 584 aa30.86■■■□□ 2.53
MSH6-202ENST00000411819 ANKRD26Q9UPS8 1709 aa30.86■■■□□ 2.53
MSH6-202ENST00000411819 PPM1GO15355 546 aaPredicted RBP30.85■■■□□ 2.53
MSH6-202ENST00000411819 TATP17735 454 aaPredicted RBP30.85■■■□□ 2.53
MSH6-202ENST00000411819 MAP2P11137 1827 aaKnown RBP30.84■■■□□ 2.53
MSH6-202ENST00000411819 PRIM1P49642 420 aaKnown RBP30.83■■■□□ 2.53
MSH6-202ENST00000411819 LRRC4BQ9NT99 713 aa30.79■■■□□ 2.52
MSH6-202ENST00000411819 ATF5Q9Y2D1 282 aaPredicted RBP30.79■■■□□ 2.52
MSH6-202ENST00000411819 NSD2O96028 1365 aa30.78■■■□□ 2.52
MSH6-202ENST00000411819 PCDH11XQ9BZA7 1347 aa30.77■■■□□ 2.52
MSH6-202ENST00000411819 PCDH11YQ9BZA8 1340 aa30.77■■■□□ 2.52
MSH6-202ENST00000411819 LY75O60449 1722 aa30.77■■■□□ 2.52
MSH6-202ENST00000411819 ZNF827Q17R98 1081 aa30.77■■■□□ 2.52
MSH6-202ENST00000411819 SLC27A3Q5K4L6 730 aa30.77■■■□□ 2.52
MSH6-202ENST00000411819 TNNT2P45379 298 aaPredicted RBP30.75■■■□□ 2.51
MSH6-202ENST00000411819 PKD1L3Q7Z443 1732 aa30.74■■■□□ 2.51
MSH6-202ENST00000411819 MTFR1LQ9H019 292 aa30.74■■■□□ 2.51
MSH6-202ENST00000411819 WASHC2AQ641Q2 1341 aa30.73■■■□□ 2.51
MSH6-202ENST00000411819 PTGER2P43116 358 aa30.72■■■□□ 2.51
MSH6-202ENST00000411819 KCNQ4P56696 695 aa30.72■■■□□ 2.51
MSH6-202ENST00000411819 PANK3Q9H999 370 aa30.72■■■□□ 2.51
MSH6-202ENST00000411819 QSER1Q2KHR3 1735 aa30.71■■■□□ 2.51
MSH6-202ENST00000411819 POLKQ9UBT6 870 aa30.71■■■□□ 2.51
MSH6-202ENST00000411819 NCAPD2Q15021 1401 aa30.71■■■□□ 2.51
MSH6-202ENST00000411819 TUBGCP6Q96RT7 1819 aa30.7■■■□□ 2.5
MSH6-202ENST00000411819 AKT1S1Q96B36 256 aa30.69■■■□□ 2.5
MSH6-202ENST00000411819 TOGARAM1Q9Y4F4 1720 aa30.68■■■□□ 2.5
MSH6-202ENST00000411819 CCNL1Q9UK58 526 aaPredicted RBP30.68■■■□□ 2.5
MSH6-202ENST00000411819 DCAF8L1A6NGE4 600 aa30.67■■■□□ 2.5
MSH6-202ENST00000411819 CYP27B1O15528 508 aa30.67■■■□□ 2.5
MSH6-202ENST00000411819 EYA1Q99502 592 aa30.66■■■□□ 2.5
MSH6-202ENST00000411819 TFCP2L1Q9NZI6 479 aa30.65■■■□□ 2.5
MSH6-202ENST00000411819 ITGB4P16144 1822 aa30.65■■■□□ 2.5
MSH6-202ENST00000411819 MPRIPQ6WCQ1 1025 aa30.63■■■□□ 2.49
MSH6-202ENST00000411819 SPG7Q9UQ90 795 aa30.63■■■□□ 2.49
MSH6-202ENST00000411819 EIF4A2Q14240 407 aaKnown RBP30.62■■■□□ 2.49
MSH6-202ENST00000411819 PNPLA7Q6ZV29 1317 aa30.62■■■□□ 2.49
MSH6-202ENST00000411819 C5P01031 1676 aa30.62■■■□□ 2.49
MSH6-202ENST00000411819 SGIP1Q9BQI5 828 aa30.61■■■□□ 2.49
MSH6-202ENST00000411819 PALLDQ8WX93 1383 aa30.6■■■□□ 2.49
MSH6-202ENST00000411819 FHDC1Q9C0D6 1143 aaPredicted RBP30.6■■■□□ 2.49
MSH6-202ENST00000411819 MORC1Q86VD1 984 aa30.58■■■□□ 2.49
MSH6-202ENST00000411819 ARXQ96QS3 562 aa30.58■■■□□ 2.49
MSH6-202ENST00000411819 KNSTRNQ9Y448 316 aa30.57■■■□□ 2.48
MSH6-202ENST00000411819 SLC16A10Q8TF71 515 aa30.56■■■□□ 2.48
MSH6-202ENST00000411819 TAF1LQ8IZX4 1826 aa30.55■■■□□ 2.48
MSH6-202ENST00000411819 SYT17Q9BSW7 474 aa30.55■■■□□ 2.48
MSH6-202ENST00000411819 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.55■■■□□ 2.482e-7■■■■□ 23.3
MSH6-202ENST00000411819 MSH5O43196 834 aa30.53■■■□□ 2.48
MSH6-202ENST00000411819 NKX1-1Q15270 411 aaPredicted RBP30.53■■■□□ 2.48
MSH6-202ENST00000411819 KIF7Q2M1P5 1343 aa30.52■■■□□ 2.48
MSH6-202ENST00000411819 IGSF1Q8N6C5 1336 aa30.52■■■□□ 2.48
MSH6-202ENST00000411819 YY1P25490 414 aa30.52■■■□□ 2.48
MSH6-202ENST00000411819 POLD1P28340 1107 aa30.52■■■□□ 2.48
MSH6-202ENST00000411819 SMARCC1Q92922 1105 aaPredicted RBP30.52■■■□□ 2.48
MSH6-202ENST00000411819 COL24A1Q17RW2 1714 aa30.51■■■□□ 2.47
MSH6-202ENST00000411819 IFNL2Q8IZJ0 200 aa30.51■■■□□ 2.47
MSH6-202ENST00000411819 PIGBQ92521 554 aa30.51■■■□□ 2.47
MSH6-202ENST00000411819 PHKG2P15735 406 aa30.5■■■□□ 2.47
MSH6-202ENST00000411819 KLHL34Q8N239 644 aa30.5■■■□□ 2.47
MSH6-202ENST00000411819 TMOD3Q9NYL9 352 aa30.49■■■□□ 2.47
MSH6-202ENST00000411819 C4BP0C0L5 1744 aa30.47■■■□□ 2.47
MSH6-202ENST00000411819 PLEKHG2Q9H7P9 1386 aa30.47■■■□□ 2.47
MSH6-202ENST00000411819 MAP3K5Q99683 1374 aa30.46■■■□□ 2.47
MSH6-202ENST00000411819 HMGB2P26583 209 aaKnown RBP30.46■■■□□ 2.47
MSH6-202ENST00000411819 COL23A1Q86Y22 540 aaPredicted RBP30.46■■■□□ 2.47
MSH6-202ENST00000411819 AK7Q96M32 723 aa30.43■■■□□ 2.46
MSH6-202ENST00000411819 AMER1Q5JTC6 1135 aaPredicted RBP30.42■■■□□ 2.46
MSH6-202ENST00000411819 PLEKHO1Q53GL0 409 aaPredicted RBP30.41■■■□□ 2.46
MSH6-202ENST00000411819 MSL1Q68DK7 614 aa30.41■■■□□ 2.46
MSH6-202ENST00000411819 AEBP1Q8IUX7 1158 aa30.4■■■□□ 2.46
MSH6-202ENST00000411819 UBR3Q6ZT12 1888 aa30.4■■■□□ 2.46
MSH6-202ENST00000411819 LOC102724428A0A0B4J2F2 783 aa30.39■■■□□ 2.46
MSH6-202ENST00000411819 SIK1P57059 783 aa30.39■■■□□ 2.46
MSH6-202ENST00000411819 ZNF530Q6P9A1 599 aaPredicted RBP30.39■■■□□ 2.46
MSH6-202ENST00000411819 FLAD1Q8NFF5 587 aa30.39■■■□□ 2.46
MSH6-202ENST00000411819 ASAP1Q9ULH1 1129 aa30.39■■■□□ 2.46
MSH6-202ENST00000411819 PHF14O94880 888 aa30.37■■■□□ 2.45
MSH6-202ENST00000411819 HSP90AB1P08238 724 aaKnown RBP30.37■■■□□ 2.45
MSH6-202ENST00000411819 AMOTQ4VCS5 1084 aa30.36■■■□□ 2.45
MSH6-202ENST00000411819 SULT6B1Q6IMI4 303 aa30.36■■■□□ 2.45
MSH6-202ENST00000411819 DCAF5Q96JK2 942 aa30.35■■■□□ 2.45
MSH6-202ENST00000411819 ATP6V1AP38606 617 aa30.34■■■□□ 2.45
MSH6-202ENST00000411819 LINC00116Q8NCU8 138 aa30.34■■■□□ 2.45
MSH6-202ENST00000411819 KDM6AO15550 1401 aaPredicted RBP30.33■■■□□ 2.45
MSH6-202ENST00000411819 IL13P35225 146 aa30.33■■■□□ 2.45
MSH6-202ENST00000411819 C1orf141Q5JVX7 400 aa30.33■■■□□ 2.45
MSH6-202ENST00000411819 CC2D1BQ5T0F9 858 aaKnown RBP30.33■■■□□ 2.45
MSH6-202ENST00000411819 ATG3Q9NT62 314 aa30.33■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms