RNA–Protein interactions for RNA: ENST00000411464.3

MRPL55-220, Transcript of mitochondrial ribosomal protein L55, humanhuman

TSL 3

Gene MRPL55, Length 767 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-220ENST00000411464 TMF1P82094 1093 aa23.41■■□□□ 1.34
MRPL55-220ENST00000411464 RRS1Q15050 365 aaKnown RBP23.41■■□□□ 1.34
MRPL55-220ENST00000411464 NBPF6Q5VWK0 638 aa23.41■■□□□ 1.34
MRPL55-220ENST00000411464 NBPF4Q96M43 638 aa23.41■■□□□ 1.34
MRPL55-220ENST00000411464 FYB1O15117 783 aa23.4■■□□□ 1.34
MRPL55-220ENST00000411464 RAPGEF4Q8WZA2 1011 aa23.4■■□□□ 1.34
MRPL55-220ENST00000411464 GGNBP2Q9H3C7 697 aa23.4■■□□□ 1.34
MRPL55-220ENST00000411464 CCNL1Q9UK58 526 aaPredicted RBP23.4■■□□□ 1.34
MRPL55-220ENST00000411464 RTL1A6NKG5 1358 aa23.4■■□□□ 1.34
MRPL55-220ENST00000411464 CGNL1Q0VF96 1302 aa23.39■■□□□ 1.34
MRPL55-220ENST00000411464 KAT6BQ8WYB5 2073 aa23.38■■□□□ 1.33
MRPL55-220ENST00000411464 MSH5O43196 834 aa23.38■■□□□ 1.33
MRPL55-220ENST00000411464 UTRNP46939 3433 aa23.38■■□□□ 1.33
MRPL55-220ENST00000411464 USP47Q96K76 1375 aa23.38■■□□□ 1.33
MRPL55-220ENST00000411464 PELP1Q8IZL8 1130 aaKnown RBP23.37■■□□□ 1.33
MRPL55-220ENST00000411464 USHBP1Q8N6Y0 703 aa23.37■■□□□ 1.33
MRPL55-220ENST00000411464 NSD2O96028 1365 aa23.37■■□□□ 1.33
MRPL55-220ENST00000411464 SMG6Q86US8 1419 aaKnown RBP23.36■■□□□ 1.33
MRPL55-220ENST00000411464 FAM208AQ9UK61 1670 aaKnown RBP23.36■■□□□ 1.33
MRPL55-220ENST00000411464 TATP17735 454 aaPredicted RBP23.36■■□□□ 1.33
MRPL55-220ENST00000411464 MEGF6O75095 1541 aa23.36■■□□□ 1.33
MRPL55-220ENST00000411464 HMGB2P26583 209 aaKnown RBP23.34■■□□□ 1.33
MRPL55-220ENST00000411464 CDCA8Q53HL2 280 aa23.34■■□□□ 1.33
MRPL55-220ENST00000411464 HSP90AB2PQ58FF8 381 aa23.33■■□□□ 1.33
MRPL55-220ENST00000411464 COL23A1Q86Y22 540 aaPredicted RBP23.31■■□□□ 1.32
MRPL55-220ENST00000411464 NLGN2Q8NFZ4 835 aa23.31■■□□□ 1.32
MRPL55-220ENST00000411464 PCDH11XQ9BZA7 1347 aa23.31■■□□□ 1.32
MRPL55-220ENST00000411464 PCDH11YQ9BZA8 1340 aa23.31■■□□□ 1.32
MRPL55-220ENST00000411464 INSRP06213 1382 aa23.3■■□□□ 1.32
MRPL55-220ENST00000411464 C1QTNF8P60827 252 aa23.3■■□□□ 1.32
MRPL55-220ENST00000411464 FLT4P35916 1363 aa23.28■■□□□ 1.32
MRPL55-220ENST00000411464 MPRIPQ6WCQ1 1025 aa23.28■■□□□ 1.32
MRPL55-220ENST00000411464 SENP3-EIF4A1A0A087X0R7 540 aa23.27■■□□□ 1.32
MRPL55-220ENST00000411464 FLAD1Q8NFF5 587 aa23.27■■□□□ 1.32
MRPL55-220ENST00000411464 KIF24Q5T7B8 1368 aa23.27■■□□□ 1.31
MRPL55-220ENST00000411464 DOT1LQ8TEK3 1739 aa23.26■■□□□ 1.31
MRPL55-220ENST00000411464 GRIN3BO60391 1043 aa23.26■■□□□ 1.31
MRPL55-220ENST00000411464 MSL1Q68DK7 614 aa23.26■■□□□ 1.31
MRPL55-220ENST00000411464 QSER1Q2KHR3 1735 aa23.25■■□□□ 1.31
MRPL55-220ENST00000411464 CYP27B1O15528 508 aa23.24■■□□□ 1.31
MRPL55-220ENST00000411464 PALLDQ8WX93 1383 aa23.24■■□□□ 1.31
MRPL55-220ENST00000411464 PPM1GO15355 546 aaPredicted RBP23.23■■□□□ 1.31
MRPL55-220ENST00000411464 GIGYF1O75420 1035 aaPredicted RBP23.23■■□□□ 1.31
MRPL55-220ENST00000411464 SMARCC1Q92922 1105 aaPredicted RBP23.23■■□□□ 1.31
MRPL55-220ENST00000411464 CARD14Q9BXL6 1004 aa23.23■■□□□ 1.31
MRPL55-220ENST00000411464 LY75O60449 1722 aa23.22■■□□□ 1.31
MRPL55-220ENST00000411464 EMILIN1Q9Y6C2 1016 aa23.22■■□□□ 1.31
MRPL55-220ENST00000411464 YBX3P16989 372 aaKnown RBP eCLIP23.21■■□□□ 1.313e-6■□□□□ 11.1
MRPL55-220ENST00000411464 RGPD2P0DJD1 1756 aa23.21■■□□□ 1.31
MRPL55-220ENST00000411464 CHD4Q14839 1912 aa23.21■■□□□ 1.31
MRPL55-220ENST00000411464 SHANK3Q9BYB0 1731 aa23.2■■□□□ 1.3
MRPL55-220ENST00000411464 AK7Q96M32 723 aa23.2■■□□□ 1.3
MRPL55-220ENST00000411464 SPG7Q9UQ90 795 aa23.2■■□□□ 1.3
MRPL55-220ENST00000411464 CD2APQ9Y5K6 639 aa23.2■■□□□ 1.3
MRPL55-220ENST00000411464 GOLGB1Q14789 3259 aaKnown RBP23.2■■□□□ 1.3
MRPL55-220ENST00000411464 COL24A1Q17RW2 1714 aa23.18■■□□□ 1.3
MRPL55-220ENST00000411464 PIGBQ92521 554 aa23.17■■□□□ 1.3
MRPL55-220ENST00000411464 NSD3Q9BZ95 1437 aa23.16■■□□□ 1.3
MRPL55-220ENST00000411464 TRIM26Q12899 539 aaPredicted RBP23.16■■□□□ 1.3
MRPL55-220ENST00000411464 NKX1-1Q15270 411 aaPredicted RBP23.16■■□□□ 1.3
MRPL55-220ENST00000411464 TUBGCP6Q96RT7 1819 aa23.15■■□□□ 1.3
MRPL55-220ENST00000411464 WASHC2AQ641Q2 1341 aa23.15■■□□□ 1.3
MRPL55-220ENST00000411464 PHF14O94880 888 aa23.14■■□□□ 1.29
MRPL55-220ENST00000411464 EYA1Q99502 592 aa23.13■■□□□ 1.29
MRPL55-220ENST00000411464 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.13■■□□□ 1.29
MRPL55-220ENST00000411464 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.12■■□□□ 1.29
MRPL55-220ENST00000411464 LOC102724428A0A0B4J2F2 783 aa23.12■■□□□ 1.29
MRPL55-220ENST00000411464 SIK1P57059 783 aa23.12■■□□□ 1.29
MRPL55-220ENST00000411464 TMOD3Q9NYL9 352 aa23.12■■□□□ 1.29
MRPL55-220ENST00000411464 AMIGO3Q86WK7 504 aa23.11■■□□□ 1.29
MRPL55-220ENST00000411464 TIMELESSQ9UNS1 1208 aa23.11■■□□□ 1.29
MRPL55-220ENST00000411464 SSFA2P28290 1259 aa23.1■■□□□ 1.29
MRPL55-220ENST00000411464 SMIM5Q71RC9 77 aa23.1■■□□□ 1.29
MRPL55-220ENST00000411464 IFNL2Q8IZJ0 200 aa23.1■■□□□ 1.29
MRPL55-220ENST00000411464 POLKQ9UBT6 870 aa23.09■■□□□ 1.29
MRPL55-220ENST00000411464 NCAPD2Q15021 1401 aa23.08■■□□□ 1.29
MRPL55-220ENST00000411464 LINC00116Q8NCU8 138 aa23.08■■□□□ 1.29
MRPL55-220ENST00000411464 POLR3GLQ9BT43 218 aa23.08■■□□□ 1.29
MRPL55-220ENST00000411464 ASAP1Q9ULH1 1129 aa23.08■■□□□ 1.29
MRPL55-220ENST00000411464 C5P01031 1676 aa23.08■■□□□ 1.29
MRPL55-220ENST00000411464 PHKG2P15735 406 aa23.07■■□□□ 1.28
MRPL55-220ENST00000411464 ATP6V1AP38606 617 aa23.07■■□□□ 1.28
MRPL55-220ENST00000411464 KIF20BQ96Q89 1820 aa23.07■■□□□ 1.28
MRPL55-220ENST00000411464 GNPATO15228 680 aa23.06■■□□□ 1.28
MRPL55-220ENST00000411464 TNNT2P45379 298 aaPredicted RBP23.06■■□□□ 1.28
MRPL55-220ENST00000411464 GPBP1L1Q9HC44 474 aaPredicted RBP23.05■■□□□ 1.28
MRPL55-220ENST00000411464 ATP10DQ9P241 1426 aa23.05■■□□□ 1.28
MRPL55-220ENST00000411464 IGSF1Q8N6C5 1336 aa23.05■■□□□ 1.28
MRPL55-220ENST00000411464 C4BP0C0L5 1744 aa23.05■■□□□ 1.28
MRPL55-220ENST00000411464 ITPK1Q13572 414 aa23.04■■□□□ 1.28
MRPL55-220ENST00000411464 ATG3Q9NT62 314 aa23.04■■□□□ 1.28
MRPL55-220ENST00000411464 EIF4A2Q14240 407 aaKnown RBP23.03■■□□□ 1.28
MRPL55-220ENST00000411464 WWC3Q9ULE0 1092 aa23.03■■□□□ 1.28
MRPL55-220ENST00000411464 PKD1L3Q7Z443 1732 aa23.01■■□□□ 1.27
MRPL55-220ENST00000411464 TOGARAM1Q9Y4F4 1720 aa23.01■■□□□ 1.27
MRPL55-220ENST00000411464 ZNF526Q8TF50 670 aaPredicted RBP23■■□□□ 1.27
MRPL55-220ENST00000411464 TRAPPC3LQ5T215 181 aa22.99■■□□□ 1.27
MRPL55-220ENST00000411464 RTCBQ9Y3I0 505 aaKnown RBP22.99■■□□□ 1.27
MRPL55-220ENST00000411464 TAF1LQ8IZX4 1826 aa22.98■■□□□ 1.27
MRPL55-220ENST00000411464 ERVV-2B6SEH9 535 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms