RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 NDUFB9Q9Y6M9 179 aa10.12□□□□□ -0.79
SNX13-201ENST00000409076 PNMA6EA0A0J9YXQ4 647 aa10.11□□□□□ -0.79
SNX13-201ENST00000409076 FSD2A1L4K1 749 aa10.11□□□□□ -0.79
SNX13-201ENST00000409076 CCDC173Q0VFZ6 552 aa10.11□□□□□ -0.79
SNX13-201ENST00000409076 ZSCAN30Q86W11 494 aa10.11□□□□□ -0.79
SNX13-201ENST00000409076 CHMP4BQ9H444 224 aaKnown RBP10.11□□□□□ -0.79
SNX13-201ENST00000409076 CEP85Q6P2H3 762 aa10.11□□□□□ -0.79
SNX13-201ENST00000409076 CNPY2Q9Y2B0 182 aa10.11□□□□□ -0.79
SNX13-201ENST00000409076 EIF4A2Q14240 407 aaKnown RBP10.11□□□□□ -0.79
SNX13-201ENST00000409076 GIMAP6Q6P9H5 292 aa10.11□□□□□ -0.79
SNX13-201ENST00000409076 GPT2Q8TD30 523 aa10.11□□□□□ -0.79
SNX13-201ENST00000409076 PHAXQ9H814 394 aaKnown RBP10.11□□□□□ -0.79
SNX13-201ENST00000409076 LMOD3Q0VAK6 560 aa10.1□□□□□ -0.79
SNX13-201ENST00000409076 ZNF692Q9BU19 519 aaPredicted RBP10.1□□□□□ -0.79
SNX13-201ENST00000409076 USP26Q9BXU7 913 aa10.1□□□□□ -0.79
SNX13-201ENST00000409076 SPDYE4A6NLX3 237 aa10.1□□□□□ -0.79
SNX13-201ENST00000409076 SRGAP3O43295 1099 aa10.1□□□□□ -0.79
SNX13-201ENST00000409076 UBTFL1P0CB47 393 aaPredicted RBP10.1□□□□□ -0.79
SNX13-201ENST00000409076 CFAP44Q96MT7 982 aa10.1□□□□□ -0.79
SNX13-201ENST00000409076 HSP90B1P14625 803 aaKnown RBP10.1□□□□□ -0.79
SNX13-201ENST00000409076 RBM25P49756 843 aaKnown RBP10.1□□□□□ -0.79
SNX13-201ENST00000409076 KIAA2012Q0VF49 1180 aa10.1□□□□□ -0.79
SNX13-201ENST00000409076 CKAP2LQ8IYA6 745 aa10.1□□□□□ -0.79
SNX13-201ENST00000409076 TFIP11Q9UBB9 837 aaKnown RBP10.1□□□□□ -0.79
SNX13-201ENST00000409076 PA2G4Q9UQ80 394 aaKnown RBP10.1□□□□□ -0.79
SNX13-201ENST00000409076 CBX1P83916 185 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 ZNF518AQ6AHZ1 1483 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 PREX2Q70Z35 1606 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 ALDH1L2Q3SY69 923 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 HDGFL1Q5TGJ6 251 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 LRRCC1Q9C099 1032 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 NPATQ14207 1427 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 GNAI2P04899 355 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 DIAPH3Q9NSV4 1193 aa10.09□□□□□ -0.79
SNX13-201ENST00000409076 MX1P20591 662 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 PDE1AP54750 535 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 DDX11Q96FC9 970 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 LRRC2Q9BYS8 371 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 LMBRD1Q9NUN5 540 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 IFT57Q9NWB7 429 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 SMC3Q9UQE7 1217 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 MADDQ8WXG6 1647 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 ARHGEF5Q12774 1597 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 ABCC2Q92887 1545 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 MTHFSDQ2M296 383 aaKnown RBP10.08□□□□□ -0.8
SNX13-201ENST00000409076 RAB11FIP4Q86YS3 637 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 CCDC85AQ96PX6 553 aaPredicted RBP10.08□□□□□ -0.8
SNX13-201ENST00000409076 CCDC8Q9H0W5 538 aaPredicted RBP10.08□□□□□ -0.8
SNX13-201ENST00000409076 TSPY26PQ9H489 355 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 C9orf78Q9NZ63 289 aaPredicted RBP10.08□□□□□ -0.8
SNX13-201ENST00000409076 ASXL2Q76L83 1435 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 A0A087WWV3 80 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 CASTP20810 708 aaKnown RBP10.08□□□□□ -0.8
SNX13-201ENST00000409076 KLHL40Q2TBA0 621 aa10.08□□□□□ -0.8
SNX13-201ENST00000409076 PRPF40BQ6NWY9 871 aaKnown RBP10.08□□□□□ -0.8
SNX13-201ENST00000409076 MYL6BP14649 208 aa10.07□□□□□ -0.8
SNX13-201ENST00000409076 STAC3Q96MF2 364 aa10.07□□□□□ -0.8
SNX13-201ENST00000409076 ABCC11Q96J66 1382 aa10.07□□□□□ -0.8
SNX13-201ENST00000409076 NLRP1Q9C000 1473 aa10.07□□□□□ -0.8
SNX13-201ENST00000409076 SETD1BQ9UPS6 1966 aaKnown RBP10.07□□□□□ -0.8
SNX13-201ENST00000409076 KLHDC4Q8TBB5 520 aa10.07□□□□□ -0.8
SNX13-201ENST00000409076 IL13P35225 146 aa10.07□□□□□ -0.8
SNX13-201ENST00000409076 USP48Q86UV5 1035 aa10.07□□□□□ -0.8
SNX13-201ENST00000409076 JAKMIP1Q96N16 626 aaKnown RBP10.07□□□□□ -0.8
SNX13-201ENST00000409076 WASLO00401 505 aaPredicted RBP10.06□□□□□ -0.8
SNX13-201ENST00000409076 MPRIPQ6WCQ1 1025 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.06□□□□□ -0.8
SNX13-201ENST00000409076 DCTPP1Q9H773 170 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 ATP7AQ04656 1500 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 GUCY1B3Q02153 619 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 TAF7Q15545 349 aaPredicted RBP10.06□□□□□ -0.8
SNX13-201ENST00000409076 ANKRD44Q8N8A2 993 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 ABTB2Q8N961 1025 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 SNX21Q969T3 373 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 CCDC61Q9Y6R9 512 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 FLIIQ13045 1269 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 AAMPQ13685 434 aa10.06□□□□□ -0.8
SNX13-201ENST00000409076 CIZ1Q9ULV3 898 aaPredicted RBP10.06□□□□□ -0.8
SNX13-201ENST00000409076 CT47B1P0C2W7 299 aaPredicted RBP10.05□□□□□ -0.8
SNX13-201ENST00000409076 ERCC4Q92889 916 aaPredicted RBP10.05□□□□□ -0.8
SNX13-201ENST00000409076 CHMP4CQ96CF2 233 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 FMNL2Q96PY5 1086 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 ACEP12821 1306 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 SYTL4Q96C24 671 aaPredicted RBP10.05□□□□□ -0.8
SNX13-201ENST00000409076 IL25Q9H293 177 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 BOLA2Q9H3K6 86 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.05□□□□□ -0.8
SNX13-201ENST00000409076 V9GYY5 206 aaPredicted RBP10.05□□□□□ -0.8
SNX13-201ENST00000409076 NPC1L1Q9UHC9 1359 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 PPP1R42Q7Z4L9 355 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 OSCARQ8IYS5 282 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 BICD2Q8TD16 824 aa10.05□□□□□ -0.8
SNX13-201ENST00000409076 DNAJC2Q99543 621 aaKnown RBP10.05□□□□□ -0.8
SNX13-201ENST00000409076 PHF23Q9BUL5 403 aaPredicted RBP10.05□□□□□ -0.8
SNX13-201ENST00000409076 TEFQ10587 303 aa10.04□□□□□ -0.8
SNX13-201ENST00000409076 EDC3Q96F86 508 aaKnown RBP10.04□□□□□ -0.8
SNX13-201ENST00000409076 ABCA6Q8N139 1617 aa10.04□□□□□ -0.8
SNX13-201ENST00000409076 KCNQ3O43525 872 aa10.04□□□□□ -0.8
SNX13-201ENST00000409076 IFIT2P09913 472 aaKnown RBP10.04□□□□□ -0.8
SNX13-201ENST00000409076 DNM1Q05193 864 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms