RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 BCL11BQ9C0K0 894 aaPredicted RBP26.01■■□□□ 1.75
RTN4-207ENST00000402434 APBA3O96018 575 aa26■■□□□ 1.75
RTN4-207ENST00000402434 SHANK3Q9BYB0 1731 aa25.98■■□□□ 1.75
RTN4-207ENST00000402434 EN1Q05925 392 aaPredicted RBP25.98■■□□□ 1.75
RTN4-207ENST00000402434 DDX10Q13206 875 aaKnown RBP25.98■■□□□ 1.75
RTN4-207ENST00000402434 PTF1AQ7RTS3 328 aa25.98■■□□□ 1.75
RTN4-207ENST00000402434 CAMKK2Q96RR4 588 aa25.98■■□□□ 1.75
RTN4-207ENST00000402434 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.98■■□□□ 1.75
RTN4-207ENST00000402434 PLEKHG2Q9H7P9 1386 aa25.97■■□□□ 1.75
RTN4-207ENST00000402434 KCNQ2O43526 872 aa25.95■■□□□ 1.74
RTN4-207ENST00000402434 PCDH11XQ9BZA7 1347 aa25.94■■□□□ 1.74
RTN4-207ENST00000402434 PCDH11YQ9BZA8 1340 aa25.94■■□□□ 1.74
RTN4-207ENST00000402434 PARD3Q8TEW0 1356 aa25.94■■□□□ 1.74
RTN4-207ENST00000402434 PLSCR1O15162 318 aa25.93■■□□□ 1.74
RTN4-207ENST00000402434 DIAPH1O60610 1272 aaKnown RBP25.93■■□□□ 1.74
RTN4-207ENST00000402434 PPP2R1AP30153 589 aa25.93■■□□□ 1.74
RTN4-207ENST00000402434 SPG7Q9UQ90 795 aa25.93■■□□□ 1.74
RTN4-207ENST00000402434 KDRP35968 1356 aa25.93■■□□□ 1.74
RTN4-207ENST00000402434 PKD1L3Q7Z443 1732 aa25.93■■□□□ 1.74
RTN4-207ENST00000402434 CYP27B1O15528 508 aa25.92■■□□□ 1.74
RTN4-207ENST00000402434 EZH2Q15910 746 aaKnown RBP25.92■■□□□ 1.74
RTN4-207ENST00000402434 ACSBG1Q96GR2 724 aa25.92■■□□□ 1.74
RTN4-207ENST00000402434 AEBP1Q8IUX7 1158 aa25.91■■□□□ 1.74
RTN4-207ENST00000402434 KAT6BQ8WYB5 2073 aa25.91■■□□□ 1.74
RTN4-207ENST00000402434 COL3A1P02461 1466 aaPredicted RBP25.91■■□□□ 1.74
RTN4-207ENST00000402434 NHSQ6T4R5 1651 aa25.91■■□□□ 1.74
RTN4-207ENST00000402434 SULT6B1Q6IMI4 303 aa25.91■■□□□ 1.74
RTN4-207ENST00000402434 NKX1-1Q15270 411 aaPredicted RBP25.87■■□□□ 1.73
RTN4-207ENST00000402434 CFAP53Q96M91 514 aa25.86■■□□□ 1.73
RTN4-207ENST00000402434 RGPD3A6NKT7 1758 aaPredicted RBP25.86■■□□□ 1.73
RTN4-207ENST00000402434 RGPD4Q7Z3J3 1758 aa25.86■■□□□ 1.73
RTN4-207ENST00000402434 PRIM1P49642 420 aaKnown RBP25.85■■□□□ 1.73
RTN4-207ENST00000402434 AMOTQ4VCS5 1084 aa25.85■■□□□ 1.73
RTN4-207ENST00000402434 PLEKHO1Q53GL0 409 aaPredicted RBP25.85■■□□□ 1.73
RTN4-207ENST00000402434 RALBP1Q15311 655 aa25.84■■□□□ 1.73
RTN4-207ENST00000402434 IFNL2Q8IZJ0 200 aa25.84■■□□□ 1.73
RTN4-207ENST00000402434 ZNF316A6NFI3 1004 aaPredicted RBP25.83■■□□□ 1.73
RTN4-207ENST00000402434 PHKG2P15735 406 aa25.83■■□□□ 1.73
RTN4-207ENST00000402434 PROM2Q8N271 834 aa25.83■■□□□ 1.73
RTN4-207ENST00000402434 DOT1LQ8TEK3 1739 aa25.82■■□□□ 1.72
RTN4-207ENST00000402434 BTAF1O14981 1849 aa25.82■■□□□ 1.72
RTN4-207ENST00000402434 HMOX1P09601 288 aa25.82■■□□□ 1.72
RTN4-207ENST00000402434 RREB1Q92766 1687 aa25.82■■□□□ 1.72
RTN4-207ENST00000402434 SYTL4Q96C24 671 aaPredicted RBP25.81■■□□□ 1.72
RTN4-207ENST00000402434 U2SURPO15042 1029 aaKnown RBP25.79■■□□□ 1.72
RTN4-207ENST00000402434 TXNRD1Q16881 649 aa25.78■■□□□ 1.72
RTN4-207ENST00000402434 NUDCQ9Y266 331 aa25.78■■□□□ 1.72
RTN4-207ENST00000402434 ZNF530Q6P9A1 599 aaPredicted RBP25.77■■□□□ 1.72
RTN4-207ENST00000402434 NUP188Q5SRE5 1749 aa25.77■■□□□ 1.72
RTN4-207ENST00000402434 HSP90AB1P08238 724 aaKnown RBP25.76■■□□□ 1.71
RTN4-207ENST00000402434 TOGARAM1Q9Y4F4 1720 aa25.75■■□□□ 1.71
RTN4-207ENST00000402434 DCAF5Q96JK2 942 aa25.74■■□□□ 1.71
RTN4-207ENST00000402434 MPRIPQ6WCQ1 1025 aa25.73■■□□□ 1.71
RTN4-207ENST00000402434 C1orf141Q5JVX7 400 aa25.72■■□□□ 1.71
RTN4-207ENST00000402434 NBPF14Q5TI25 921 aa25.72■■□□□ 1.71
RTN4-207ENST00000402434 ITGB4P16144 1822 aa25.72■■□□□ 1.71
RTN4-207ENST00000402434 PIGBQ92521 554 aa25.72■■□□□ 1.71
RTN4-207ENST00000402434 ERVV-2B6SEH9 535 aa25.71■■□□□ 1.71
RTN4-207ENST00000402434 RSPH6AQ9H0K4 717 aa25.71■■□□□ 1.71
RTN4-207ENST00000402434 MYBBP1AQ9BQG0 1328 aaKnown RBP25.7■■□□□ 1.71
RTN4-207ENST00000402434 U2AF1L5P0DN76 240 aaPredicted RBP25.7■■□□□ 1.7
RTN4-207ENST00000402434 U2AF1Q01081 240 aaKnown RBP eCLIP25.7■■□□□ 1.74e-6■□□□□ 9.4
RTN4-207ENST00000402434 MTHFSDQ2M296 383 aaKnown RBP25.7■■□□□ 1.7
RTN4-207ENST00000402434 AKAP4Q5JQC9 854 aa25.7■■□□□ 1.7
RTN4-207ENST00000402434 SLC27A3Q5K4L6 730 aa25.7■■□□□ 1.7
RTN4-207ENST00000402434 PRKRIP1Q9H875 184 aaPredicted RBP25.7■■□□□ 1.7
RTN4-207ENST00000402434 KDM6AO15550 1401 aaPredicted RBP25.69■■□□□ 1.7
RTN4-207ENST00000402434 FCHSD2O94868 740 aa25.69■■□□□ 1.7
RTN4-207ENST00000402434 R3HDM1Q15032 1099 aaKnown RBP25.69■■□□□ 1.7
RTN4-207ENST00000402434 LRRC4BQ9NT99 713 aa25.69■■□□□ 1.7
RTN4-207ENST00000402434 PSDA5PKW4 1024 aaPredicted RBP25.68■■□□□ 1.7
RTN4-207ENST00000402434 TMOD3Q9NYL9 352 aa25.68■■□□□ 1.7
RTN4-207ENST00000402434 LY75O60449 1722 aa25.67■■□□□ 1.7
RTN4-207ENST00000402434 PRKAR2BP31323 418 aa25.66■■□□□ 1.7
RTN4-207ENST00000402434 ANO8Q9HCE9 1232 aaPredicted RBP25.66■■□□□ 1.7
RTN4-207ENST00000402434 SMARCC1Q92922 1105 aaPredicted RBP25.66■■□□□ 1.7
RTN4-207ENST00000402434 PHACTR3Q96KR7 559 aa25.65■■□□□ 1.7
RTN4-207ENST00000402434 PALLDQ8WX93 1383 aa25.64■■□□□ 1.7
RTN4-207ENST00000402434 GAS2L2Q8NHY3 880 aa25.64■■□□□ 1.69
RTN4-207ENST00000402434 CABP4P57796 275 aa25.62■■□□□ 1.69
RTN4-207ENST00000402434 ASAP1Q9ULH1 1129 aa25.62■■□□□ 1.69
RTN4-207ENST00000402434 PAPPAQ13219 1627 aa25.62■■□□□ 1.69
RTN4-207ENST00000402434 SLC15A2Q16348 729 aa25.61■■□□□ 1.69
RTN4-207ENST00000402434 LGR6Q9HBX8 967 aa25.61■■□□□ 1.69
RTN4-207ENST00000402434 CCNL1Q9UK58 526 aaPredicted RBP25.61■■□□□ 1.69
RTN4-207ENST00000402434 SCN11AQ9UI33 1791 aa25.61■■□□□ 1.69
RTN4-207ENST00000402434 KCNQ4P56696 695 aa25.6■■□□□ 1.69
RTN4-207ENST00000402434 ATG3Q9NT62 314 aa25.6■■□□□ 1.69
RTN4-207ENST00000402434 STK32BQ9NY57 414 aa25.6■■□□□ 1.69
RTN4-207ENST00000402434 RNMTO43148 476 aaKnown RBP25.6■■□□□ 1.69
RTN4-207ENST00000402434 NFATC2IPQ8NCF5 419 aa25.6■■□□□ 1.69
RTN4-207ENST00000402434 ADAMTS7Q9UKP4 1686 aa25.58■■□□□ 1.69
RTN4-207ENST00000402434 GNAT3A8MTJ3 354 aa25.58■■□□□ 1.69
RTN4-207ENST00000402434 HMGB2P26583 209 aaKnown RBP25.57■■□□□ 1.68
RTN4-207ENST00000402434 AKT1S1Q96B36 256 aa25.57■■□□□ 1.68
RTN4-207ENST00000402434 MAP3K5Q99683 1374 aa25.57■■□□□ 1.68
RTN4-207ENST00000402434 SLC52A2Q9HAB3 445 aa25.57■■□□□ 1.68
RTN4-207ENST00000402434 SRCAPQ6ZRS2 3230 aa25.56■■□□□ 1.68
RTN4-207ENST00000402434 PLEKHF1Q96S99 279 aa25.56■■□□□ 1.68
RTN4-207ENST00000402434 LOC102724428A0A0B4J2F2 783 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms