RNA–Protein interactions for RNA: ENST00000395860.6

VCPKMT-202, Transcript of valosin containing protein lysine methyltransferase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCPKMT, Length 1,761 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-202ENST00000395860 DCTN1Q14203 1278 aa26.6■■□□□ 1.85
VCPKMT-202ENST00000395860 SUPT16HQ9Y5B9 1047 aaKnown RBP26.6■■□□□ 1.85
VCPKMT-202ENST00000395860 TATP17735 454 aaPredicted RBP26.59■■□□□ 1.85
VCPKMT-202ENST00000395860 LARP1Q6PKG0 1096 aaKnown RBP26.59■■□□□ 1.85
VCPKMT-202ENST00000395860 PARP4Q9UKK3 1724 aaKnown RBP26.59■■□□□ 1.85
VCPKMT-202ENST00000395860 GNAT3A8MTJ3 354 aa26.58■■□□□ 1.85
VCPKMT-202ENST00000395860 MAP3K5Q99683 1374 aa26.58■■□□□ 1.85
VCPKMT-202ENST00000395860 HTATSF1O43719 755 aaKnown RBP26.58■■□□□ 1.85
VCPKMT-202ENST00000395860 MCM10Q7L590 875 aa26.58■■□□□ 1.85
VCPKMT-202ENST00000395860 CARD10Q9BWT7 1032 aa26.58■■□□□ 1.85
VCPKMT-202ENST00000395860 CRB1P82279 1406 aa26.58■■□□□ 1.84
VCPKMT-202ENST00000395860 MEGF6O75095 1541 aa26.57■■□□□ 1.84
VCPKMT-202ENST00000395860 NRAPQ86VF7 1730 aa26.57■■□□□ 1.84
VCPKMT-202ENST00000395860 NWD2Q9ULI1 1742 aa26.57■■□□□ 1.84
VCPKMT-202ENST00000395860 VIRMAQ69YN4 1812 aaKnown RBP26.57■■□□□ 1.84
VCPKMT-202ENST00000395860 SPATA31A6Q5VVP1 1343 aa26.56■■□□□ 1.84
VCPKMT-202ENST00000395860 PLEKHG2Q9H7P9 1386 aa26.56■■□□□ 1.84
VCPKMT-202ENST00000395860 ZNF530Q6P9A1 599 aaPredicted RBP26.56■■□□□ 1.84
VCPKMT-202ENST00000395860 RCAN3Q9UKA8 241 aa26.56■■□□□ 1.84
VCPKMT-202ENST00000395860 LAS1LQ9Y4W2 734 aaKnown RBP26.56■■□□□ 1.84
VCPKMT-202ENST00000395860 PKD1L3Q7Z443 1732 aa26.55■■□□□ 1.84
VCPKMT-202ENST00000395860 FANCIQ9NVI1 1328 aa26.54■■□□□ 1.84
VCPKMT-202ENST00000395860 GNAI1P63096 354 aa26.54■■□□□ 1.84
VCPKMT-202ENST00000395860 TSR2Q969E8 191 aaKnown RBP26.54■■□□□ 1.84
VCPKMT-202ENST00000395860 IFT57Q9NWB7 429 aa26.54■■□□□ 1.84
VCPKMT-202ENST00000395860 LRRC37A3O60309 1634 aa26.53■■□□□ 1.84
VCPKMT-202ENST00000395860 AKAP4Q5JQC9 854 aa26.53■■□□□ 1.84
VCPKMT-202ENST00000395860 C1orf141Q5JVX7 400 aa26.53■■□□□ 1.84
VCPKMT-202ENST00000395860 SPG7Q9UQ90 795 aa26.52■■□□□ 1.84
VCPKMT-202ENST00000395860 CFAP44Q96MT7 982 aa26.51■■□□□ 1.83
VCPKMT-202ENST00000395860 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.51■■□□□ 1.83
VCPKMT-202ENST00000395860 GTF3C3Q9Y5Q9 886 aa26.51■■□□□ 1.83
VCPKMT-202ENST00000395860 OVOS2A0A0G2JMS6 1433 aa26.5■■□□□ 1.83
VCPKMT-202ENST00000395860 ZNF853P0CG23 659 aa26.5■■□□□ 1.83
VCPKMT-202ENST00000395860 USP35Q9P2H5 1018 aa26.5■■□□□ 1.83
VCPKMT-202ENST00000395860 SLIT2O94813 1529 aa26.5■■□□□ 1.83
VCPKMT-202ENST00000395860 IL2RBP14784 551 aa26.49■■□□□ 1.83
VCPKMT-202ENST00000395860 LRP6O75581 1613 aa26.48■■□□□ 1.83
VCPKMT-202ENST00000395860 NEFLP07196 543 aa26.48■■□□□ 1.83
VCPKMT-202ENST00000395860 IL17REQ8NFR9 667 aa26.48■■□□□ 1.83
VCPKMT-202ENST00000395860 WNK3Q9BYP7 1800 aa26.47■■□□□ 1.83
VCPKMT-202ENST00000395860 MBIPQ9NS73 344 aa26.47■■□□□ 1.83
VCPKMT-202ENST00000395860 EXOSC9Q06265 439 aaKnown RBP26.46■■□□□ 1.83
VCPKMT-202ENST00000395860 C8orf37Q96NL8 207 aa26.46■■□□□ 1.83
VCPKMT-202ENST00000395860 NGLY1Q96IV0 654 aa26.45■■□□□ 1.82
VCPKMT-202ENST00000395860 CEMIPQ8WUJ3 1361 aa26.44■■□□□ 1.82
VCPKMT-202ENST00000395860 MPRIPQ6WCQ1 1025 aa26.44■■□□□ 1.82
VCPKMT-202ENST00000395860 SCN11AQ9UI33 1791 aa26.44■■□□□ 1.82
VCPKMT-202ENST00000395860 CHL1O00533 1208 aa26.43■■□□□ 1.82
VCPKMT-202ENST00000395860 IFNL2Q8IZJ0 200 aa26.43■■□□□ 1.82
VCPKMT-202ENST00000395860 ADAMTS7Q9UKP4 1686 aa26.43■■□□□ 1.82
VCPKMT-202ENST00000395860 SHANK3Q9BYB0 1731 aa26.43■■□□□ 1.82
VCPKMT-202ENST00000395860 PHKG2P15735 406 aa26.43■■□□□ 1.82
VCPKMT-202ENST00000395860 ZCRB1Q8TBF4 217 aaKnown RBP26.43■■□□□ 1.82
VCPKMT-202ENST00000395860 LGR6Q9HBX8 967 aa26.43■■□□□ 1.82
VCPKMT-202ENST00000395860 RNF123Q5XPI4 1314 aa26.42■■□□□ 1.82
VCPKMT-202ENST00000395860 CT47B1P0C2W7 299 aaPredicted RBP26.42■■□□□ 1.82
VCPKMT-202ENST00000395860 RNMTO43148 476 aaKnown RBP26.41■■□□□ 1.82
VCPKMT-202ENST00000395860 MEX3CQ5U5Q3 659 aaKnown RBP26.41■■□□□ 1.82
VCPKMT-202ENST00000395860 PCDH11XQ9BZA7 1347 aa26.4■■□□□ 1.82
VCPKMT-202ENST00000395860 PCDH11YQ9BZA8 1340 aa26.4■■□□□ 1.82
VCPKMT-202ENST00000395860 UNC5CLQ8IV45 518 aa26.4■■□□□ 1.82
VCPKMT-202ENST00000395860 TSPYL4Q9UJ04 414 aa26.4■■□□□ 1.82
VCPKMT-202ENST00000395860 CYP27B1O15528 508 aa26.39■■□□□ 1.82
VCPKMT-202ENST00000395860 TAF7Q15545 349 aaPredicted RBP26.39■■□□□ 1.82
VCPKMT-202ENST00000395860 SPATA31A1Q5TZJ5 1347 aa26.39■■□□□ 1.82
VCPKMT-202ENST00000395860 DISP2A7MBM2 1401 aa26.39■■□□□ 1.82
VCPKMT-202ENST00000395860 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.39■■□□□ 1.81
VCPKMT-202ENST00000395860 RRP1P56182 461 aaKnown RBP26.38■■□□□ 1.81
VCPKMT-202ENST00000395860 TEFQ10587 303 aa26.38■■□□□ 1.81
VCPKMT-202ENST00000395860 MIS18AQ9NYP9 233 aa26.38■■□□□ 1.81
VCPKMT-202ENST00000395860 CCDC9Q9Y3X0 531 aaKnown RBP26.38■■□□□ 1.81
VCPKMT-202ENST00000395860 SIPA1L3O60292 1781 aaPredicted RBP26.38■■□□□ 1.81
VCPKMT-202ENST00000395860 HSP90AB1P08238 724 aaKnown RBP26.38■■□□□ 1.81
VCPKMT-202ENST00000395860 THRAP3Q9Y2W1 955 aaKnown RBP26.38■■□□□ 1.81
VCPKMT-202ENST00000395860 BCL9LQ86UU0 1499 aa26.37■■□□□ 1.81
VCPKMT-202ENST00000395860 FKBP8Q14318 412 aa26.37■■□□□ 1.81
VCPKMT-202ENST00000395860 FNBP4Q8N3X1 1017 aaPredicted RBP26.37■■□□□ 1.81
VCPKMT-202ENST00000395860 BABAM1Q9NWV8 329 aa26.37■■□□□ 1.81
VCPKMT-202ENST00000395860 SPATA31A5Q5VU36 1347 aa26.36■■□□□ 1.81
VCPKMT-202ENST00000395860 SPATA31A7Q8IWB4 1347 aa26.36■■□□□ 1.81
VCPKMT-202ENST00000395860 KDM6AO15550 1401 aaPredicted RBP26.36■■□□□ 1.81
VCPKMT-202ENST00000395860 KDM3BQ7LBC6 1761 aa26.36■■□□□ 1.81
VCPKMT-202ENST00000395860 RARSP54136 660 aaKnown RBP26.35■■□□□ 1.81
VCPKMT-202ENST00000395860 IRX6P78412 446 aaPredicted RBP26.35■■□□□ 1.81
VCPKMT-202ENST00000395860 DCAF5Q96JK2 942 aa26.35■■□□□ 1.81
VCPKMT-202ENST00000395860 BCAR3O75815 825 aa26.33■■□□□ 1.81
VCPKMT-202ENST00000395860 CDCA7Q9BWT1 371 aaPredicted RBP26.33■■□□□ 1.81
VCPKMT-202ENST00000395860 USP21Q9UK80 565 aa26.33■■□□□ 1.81
VCPKMT-202ENST00000395860 TWISTNBQ3B726 338 aaPredicted RBP26.33■■□□□ 1.8
VCPKMT-202ENST00000395860 C8orf58Q8NAV2 365 aa26.33■■□□□ 1.8
VCPKMT-202ENST00000395860 DDX54Q8TDD1 881 aaKnown RBP26.33■■□□□ 1.8
VCPKMT-202ENST00000395860 VPS72Q15906 364 aa26.32■■□□□ 1.8
VCPKMT-202ENST00000395860 TSPYL6Q8N831 410 aa26.32■■□□□ 1.8
VCPKMT-202ENST00000395860 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.32■■□□□ 1.8
VCPKMT-202ENST00000395860 ELL2O00472 640 aaPredicted RBP26.31■■□□□ 1.8
VCPKMT-202ENST00000395860 VAMP4O75379 141 aa26.3■■□□□ 1.8
VCPKMT-202ENST00000395860 ZNF428Q96B54 188 aa26.3■■□□□ 1.8
VCPKMT-202ENST00000395860 BTBD11A6QL63 1104 aa26.3■■□□□ 1.8
VCPKMT-202ENST00000395860 PLIN1O60240 522 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms