RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 C11orf95C9JLR9 678 aaPredicted RBP18.96■□□□□ 0.63
SHANK1-204ENST00000391814 KRT18P05783 430 aaKnown RBP18.96■□□□□ 0.63
SHANK1-204ENST00000391814 CCDC83Q8IWF9 413 aa18.95■□□□□ 0.62
SHANK1-204ENST00000391814 ATF7IPQ6VMQ6 1270 aa18.95■□□□□ 0.62
SHANK1-204ENST00000391814 SRRTQ9BXP5 876 aaKnown RBP18.95■□□□□ 0.62
SHANK1-204ENST00000391814 SEPT11Q9NVA2 429 aaKnown RBP18.95■□□□□ 0.62
SHANK1-204ENST00000391814 BMS1Q14692 1282 aaKnown RBP18.95■□□□□ 0.62
SHANK1-204ENST00000391814 PLCD3Q8N3E9 789 aa18.95■□□□□ 0.62
SHANK1-204ENST00000391814 PPP6R1Q9UPN7 881 aa18.95■□□□□ 0.62
SHANK1-204ENST00000391814 PANK2Q9BZ23 570 aa18.94■□□□□ 0.62
SHANK1-204ENST00000391814 KIF4BQ2VIQ3 1234 aa18.94■□□□□ 0.62
SHANK1-204ENST00000391814 ZNF428Q96B54 188 aa18.94■□□□□ 0.62
SHANK1-204ENST00000391814 MNAT1P51948 309 aa18.94■□□□□ 0.62
SHANK1-204ENST00000391814 KRT222Q8N1A0 295 aa18.94■□□□□ 0.62
SHANK1-204ENST00000391814 DNAAF4Q8WXU2 420 aa18.94■□□□□ 0.62
SHANK1-204ENST00000391814 TTC39AQ5SRH9 613 aa18.94■□□□□ 0.62
SHANK1-204ENST00000391814 CTR9Q6PD62 1173 aa18.93■□□□□ 0.62
SHANK1-204ENST00000391814 ERC1Q8IUD2 1116 aa18.93■□□□□ 0.62
SHANK1-204ENST00000391814 CCDC94Q9BW85 323 aaPredicted RBP18.93■□□□□ 0.62
SHANK1-204ENST00000391814 CKAP2LQ8IYA6 745 aa18.93■□□□□ 0.62
SHANK1-204ENST00000391814 GTPBP4Q9BZE4 634 aaKnown RBP18.93■□□□□ 0.62
SHANK1-204ENST00000391814 VGFO15240 615 aaPredicted RBP18.93■□□□□ 0.62
SHANK1-204ENST00000391814 MCM3P25205 808 aa18.93■□□□□ 0.62
SHANK1-204ENST00000391814 TMEM132AQ24JP5 1023 aa18.93■□□□□ 0.62
SHANK1-204ENST00000391814 XRCC6P12956 609 aaKnown RBP eCLIP18.93■□□□□ 0.62
SHANK1-204ENST00000391814 TAF4BQ92750 862 aa18.93■□□□□ 0.62
SHANK1-204ENST00000391814 FERMT3Q86UX7 667 aa18.92■□□□□ 0.62
SHANK1-204ENST00000391814 BLOC1S2Q6QNY1 142 aa18.92■□□□□ 0.62
SHANK1-204ENST00000391814 CCDC69A6NI79 296 aa18.92■□□□□ 0.62
SHANK1-204ENST00000391814 PRKAR2BP31323 418 aa18.92■□□□□ 0.62
SHANK1-204ENST00000391814 SNW1Q13573 536 aaKnown RBP18.91■□□□□ 0.62
SHANK1-204ENST00000391814 TOP1P11387 765 aaKnown RBP18.91■□□□□ 0.62
SHANK1-204ENST00000391814 SMARCC1Q92922 1105 aaPredicted RBP18.91■□□□□ 0.62
SHANK1-204ENST00000391814 SIL1Q9H173 461 aa18.91■□□□□ 0.62
SHANK1-204ENST00000391814 ANO10Q9NW15 660 aa18.91■□□□□ 0.62
SHANK1-204ENST00000391814 SLC4A2P04920 1241 aa18.91■□□□□ 0.62
SHANK1-204ENST00000391814 EIF5P55010 431 aaKnown RBP18.91■□□□□ 0.62
SHANK1-204ENST00000391814 GOPCQ9HD26 462 aa18.91■□□□□ 0.62
SHANK1-204ENST00000391814 NF2P35240 595 aa18.91■□□□□ 0.62
SHANK1-204ENST00000391814 GDPD2Q9HCC8 539 aa18.9■□□□□ 0.62
SHANK1-204ENST00000391814 LRRC9Q6ZRR7 1453 aa18.9■□□□□ 0.62
SHANK1-204ENST00000391814 PAXBP1Q9Y5B6 917 aa18.9■□□□□ 0.62
SHANK1-204ENST00000391814 TMC6Q7Z403 805 aa18.9■□□□□ 0.62
SHANK1-204ENST00000391814 ZHX3Q9H4I2 956 aa18.9■□□□□ 0.62
SHANK1-204ENST00000391814 TBC1D2BQ9UPU7 963 aa18.9■□□□□ 0.62
SHANK1-204ENST00000391814 WDR63Q8IWG1 891 aa18.89■□□□□ 0.61
SHANK1-204ENST00000391814 SMARCA5O60264 1052 aaPredicted RBP18.89■□□□□ 0.61
SHANK1-204ENST00000391814 TMEM57Q8N5G2 664 aa18.89■□□□□ 0.61
SHANK1-204ENST00000391814 IGSF3O75054 1194 aa18.88■□□□□ 0.61
SHANK1-204ENST00000391814 IKQ13123 557 aaPredicted RBP18.88■□□□□ 0.61
SHANK1-204ENST00000391814 PRDM2Q13029 1718 aa18.88■□□□□ 0.61
SHANK1-204ENST00000391814 RSPH14Q9UHP6 348 aa18.88■□□□□ 0.61
SHANK1-204ENST00000391814 POTEB2H3BUK9 544 aa18.88■□□□□ 0.61
SHANK1-204ENST00000391814 SLFN5Q08AF3 891 aa18.88■□□□□ 0.61
SHANK1-204ENST00000391814 MYOM3Q5VTT5 1437 aa18.88■□□□□ 0.61
SHANK1-204ENST00000391814 CCDC178Q5BJE1 867 aa18.88■□□□□ 0.61
SHANK1-204ENST00000391814 NUP133Q8WUM0 1156 aa18.88■□□□□ 0.61
SHANK1-204ENST00000391814 BAG4O95429 457 aaKnown RBP18.87■□□□□ 0.61
SHANK1-204ENST00000391814 NOLC1Q14978 699 aaKnown RBP eCLIP18.87■□□□□ 0.61
SHANK1-204ENST00000391814 ZNF397Q8NF99 534 aaPredicted RBP18.87■□□□□ 0.61
SHANK1-204ENST00000391814 SRCIN1Q9C0H9 1055 aa18.87■□□□□ 0.61
SHANK1-204ENST00000391814 LIG1P18858 919 aa18.87■□□□□ 0.61
SHANK1-204ENST00000391814 EZRP15311 586 aaKnown RBP18.87■□□□□ 0.61
SHANK1-204ENST00000391814 CCT4P50991 539 aaKnown RBP18.87■□□□□ 0.61
SHANK1-204ENST00000391814 IFFO1Q0D2I5 559 aa18.87■□□□□ 0.61
SHANK1-204ENST00000391814 NUTM1Q86Y26 1132 aa18.86■□□□□ 0.61
SHANK1-204ENST00000391814 TRIM22Q8IYM9 498 aa18.86■□□□□ 0.61
SHANK1-204ENST00000391814 SPA17Q15506 151 aa18.86■□□□□ 0.61
SHANK1-204ENST00000391814 CPLX3Q8WVH0 158 aa18.86■□□□□ 0.61
SHANK1-204ENST00000391814 DNA2P51530 1060 aa18.86■□□□□ 0.61
SHANK1-204ENST00000391814 LRSAM1Q6UWE0 723 aa18.86■□□□□ 0.61
SHANK1-204ENST00000391814 AACSQ86V21 672 aa18.86■□□□□ 0.61
SHANK1-204ENST00000391814 NEMFO60524 1076 aa18.85■□□□□ 0.61
SHANK1-204ENST00000391814 ATP2C2O75185 946 aa18.85■□□□□ 0.61
SHANK1-204ENST00000391814 PLEKHH1Q9ULM0 1364 aa18.85■□□□□ 0.61
SHANK1-204ENST00000391814 LARP6Q9BRS8 491 aaKnown RBP18.85■□□□□ 0.61
SHANK1-204ENST00000391814 ZSWIM4Q9H7M6 989 aa18.85■□□□□ 0.61
SHANK1-204ENST00000391814 IL1RAPL2Q9NP60 686 aa18.84■□□□□ 0.61
SHANK1-204ENST00000391814 UVSSAQ2YD98 709 aa18.84■□□□□ 0.61
SHANK1-204ENST00000391814 TTC31Q49AM3 519 aaPredicted RBP18.84■□□□□ 0.61
SHANK1-204ENST00000391814 NOL7Q9UMY1 257 aaKnown RBP18.84■□□□□ 0.61
SHANK1-204ENST00000391814 ZNF526Q8TF50 670 aaPredicted RBP18.84■□□□□ 0.61
SHANK1-204ENST00000391814 NBPF8Q3BBV2 869 aa18.83■□□□□ 0.61
SHANK1-204ENST00000391814 CCDC91Q7Z6B0 441 aa18.83■□□□□ 0.61
SHANK1-204ENST00000391814 FAM177BA6PVY3 158 aa18.83■□□□□ 0.61
SHANK1-204ENST00000391814 KLHL10Q6JEL2 608 aa18.83■□□□□ 0.61
SHANK1-204ENST00000391814 MICALL1Q8N3F8 863 aa18.83■□□□□ 0.61
SHANK1-204ENST00000391814 SMAP1Q8IYB5 467 aaPredicted RBP18.83■□□□□ 0.6
SHANK1-204ENST00000391814 GSDMDP57764 484 aa18.83■□□□□ 0.6
SHANK1-204ENST00000391814 ZNF644Q9H582 1327 aaPredicted RBP18.83■□□□□ 0.6
SHANK1-204ENST00000391814 CCDC158Q5M9N0 1113 aa18.83■□□□□ 0.6
SHANK1-204ENST00000391814 NUP88Q99567 741 aaPredicted RBP18.83■□□□□ 0.6
SHANK1-204ENST00000391814 LUZP1Q86V48 1076 aa18.82■□□□□ 0.6
SHANK1-204ENST00000391814 ZBTB9Q96C00 473 aa18.82■□□□□ 0.6
SHANK1-204ENST00000391814 IVLP07476 585 aa18.82■□□□□ 0.6
SHANK1-204ENST00000391814 PRPF40BQ6NWY9 871 aaKnown RBP18.82■□□□□ 0.6
SHANK1-204ENST00000391814 KLHL40Q2TBA0 621 aa18.82■□□□□ 0.6
SHANK1-204ENST00000391814 DDX54Q8TDD1 881 aaKnown RBP18.82■□□□□ 0.6
SHANK1-204ENST00000391814 SMARCA2P51531 1590 aa18.81■□□□□ 0.6
SHANK1-204ENST00000391814 STX1AQ16623 288 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms