RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ZNF853P0CG23 659 aa23.43■■□□□ 1.34
CCDC88C-203ENST00000389856 PRDM11Q9NQV5 511 aa23.43■■□□□ 1.34
CCDC88C-203ENST00000389856 MAP3K5Q99683 1374 aa23.43■■□□□ 1.34
CCDC88C-203ENST00000389856 CSB-PGBD3P0DP91 1061 aa23.42■■□□□ 1.34
CCDC88C-203ENST00000389856 CANXP27824 592 aaKnown RBP23.42■■□□□ 1.34
CCDC88C-203ENST00000389856 EXOSC9Q06265 439 aaKnown RBP23.42■■□□□ 1.34
CCDC88C-203ENST00000389856 AXIN2Q9Y2T1 843 aa23.42■■□□□ 1.34
CCDC88C-203ENST00000389856 RARSP54136 660 aaKnown RBP23.41■■□□□ 1.34
CCDC88C-203ENST00000389856 USHBP1Q8N6Y0 703 aa23.41■■□□□ 1.34
CCDC88C-203ENST00000389856 THUMPD2Q9BTF0 503 aaKnown RBP23.4■■□□□ 1.34
CCDC88C-203ENST00000389856 FAM83GA6ND36 823 aa23.39■■□□□ 1.33
CCDC88C-203ENST00000389856 NLRP2Q9NX02 1062 aa23.39■■□□□ 1.33
CCDC88C-203ENST00000389856 COL22A1Q8NFW1 1626 aaPredicted RBP23.39■■□□□ 1.33
CCDC88C-203ENST00000389856 MS4A1P11836 297 aa23.38■■□□□ 1.33
CCDC88C-203ENST00000389856 LRRC37A3O60309 1634 aa23.38■■□□□ 1.33
CCDC88C-203ENST00000389856 MCM10Q7L590 875 aa23.37■■□□□ 1.33
CCDC88C-203ENST00000389856 RAPGEF4Q8WZA2 1011 aa23.37■■□□□ 1.33
CCDC88C-203ENST00000389856 MBIPQ9NS73 344 aa23.37■■□□□ 1.33
CCDC88C-203ENST00000389856 BABAM1Q9NWV8 329 aa23.37■■□□□ 1.33
CCDC88C-203ENST00000389856 PDE3AQ14432 1141 aa23.37■■□□□ 1.33
CCDC88C-203ENST00000389856 ALDH1L2Q3SY69 923 aa23.37■■□□□ 1.33
CCDC88C-203ENST00000389856 PHLPP1O60346 1717 aa23.37■■□□□ 1.33
CCDC88C-203ENST00000389856 BCAR3O75815 825 aa23.36■■□□□ 1.33
CCDC88C-203ENST00000389856 DCTN1Q14203 1278 aa23.36■■□□□ 1.33
CCDC88C-203ENST00000389856 CHRNA2Q15822 529 aa23.36■■□□□ 1.33
CCDC88C-203ENST00000389856 CRB1P82279 1406 aa23.36■■□□□ 1.33
CCDC88C-203ENST00000389856 CHL1O00533 1208 aa23.35■■□□□ 1.33
CCDC88C-203ENST00000389856 PLIN1O60240 522 aa23.35■■□□□ 1.33
CCDC88C-203ENST00000389856 AKAP4Q5JQC9 854 aa23.35■■□□□ 1.33
CCDC88C-203ENST00000389856 C1orf141Q5JVX7 400 aa23.35■■□□□ 1.33
CCDC88C-203ENST00000389856 TATP17735 454 aaPredicted RBP23.34■■□□□ 1.33
CCDC88C-203ENST00000389856 OVOS2A0A0G2JMS6 1433 aa23.34■■□□□ 1.33
CCDC88C-203ENST00000389856 ZNF530Q6P9A1 599 aaPredicted RBP23.33■■□□□ 1.33
CCDC88C-203ENST00000389856 SMC4Q9NTJ3 1288 aa23.33■■□□□ 1.33
CCDC88C-203ENST00000389856 KIF16BQ96L93 1317 aa23.33■■□□□ 1.33
CCDC88C-203ENST00000389856 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.33■■□□□ 1.32
CCDC88C-203ENST00000389856 WDR17Q8IZU2 1322 aa23.32■■□□□ 1.32
CCDC88C-203ENST00000389856 SPG7Q9UQ90 795 aa23.32■■□□□ 1.32
CCDC88C-203ENST00000389856 IPO8O15397 1037 aaKnown RBP23.31■■□□□ 1.32
CCDC88C-203ENST00000389856 EXOC6Q8TAG9 804 aa23.31■■□□□ 1.32
CCDC88C-203ENST00000389856 COL14A1Q05707 1796 aaKnown RBP23.3■■□□□ 1.32
CCDC88C-203ENST00000389856 COL5A2P05997 1499 aaPredicted RBP23.3■■□□□ 1.32
CCDC88C-203ENST00000389856 COL16A1Q07092 1604 aaPredicted RBP23.3■■□□□ 1.32
CCDC88C-203ENST00000389856 TWISTNBQ3B726 338 aaPredicted RBP23.3■■□□□ 1.32
CCDC88C-203ENST00000389856 ZKSCAN2Q63HK3 967 aa23.3■■□□□ 1.32
CCDC88C-203ENST00000389856 FRAT1Q92837 279 aaPredicted RBP23.3■■□□□ 1.32
CCDC88C-203ENST00000389856 TSPYL4Q9UJ04 414 aa23.3■■□□□ 1.32
CCDC88C-203ENST00000389856 SOS1Q07889 1333 aaPredicted RBP23.29■■□□□ 1.32
CCDC88C-203ENST00000389856 CRBNQ96SW2 442 aa23.29■■□□□ 1.32
CCDC88C-203ENST00000389856 PARP4Q9UKK3 1724 aaKnown RBP23.28■■□□□ 1.32
CCDC88C-203ENST00000389856 BRPF1P55201 1214 aaPredicted RBP23.28■■□□□ 1.32
CCDC88C-203ENST00000389856 EVA1CP58658 441 aa23.28■■□□□ 1.32
CCDC88C-203ENST00000389856 AAMPQ13685 434 aa23.28■■□□□ 1.32
CCDC88C-203ENST00000389856 TAF7Q15545 349 aaPredicted RBP23.28■■□□□ 1.32
CCDC88C-203ENST00000389856 CERKQ8TCT0 537 aa23.28■■□□□ 1.32
CCDC88C-203ENST00000389856 CEMIPQ8WUJ3 1361 aa23.27■■□□□ 1.32
CCDC88C-203ENST00000389856 UBAP1LF5GYI3 381 aa23.27■■□□□ 1.32
CCDC88C-203ENST00000389856 VAMP4O75379 141 aa23.27■■□□□ 1.32
CCDC88C-203ENST00000389856 TOM1L2Q6ZVM7 507 aa23.27■■□□□ 1.32
CCDC88C-203ENST00000389856 FBXO41Q8TF61 875 aa23.27■■□□□ 1.32
CCDC88C-203ENST00000389856 SSH1Q8WYL5 1049 aa23.27■■□□□ 1.32
CCDC88C-203ENST00000389856 CHMP4AQ9BY43 222 aa23.26■■□□□ 1.31
CCDC88C-203ENST00000389856 IL17REQ8NFR9 667 aa23.26■■□□□ 1.31
CCDC88C-203ENST00000389856 PKD1L3Q7Z443 1732 aa23.25■■□□□ 1.31
CCDC88C-203ENST00000389856 TEFQ10587 303 aa23.25■■□□□ 1.31
CCDC88C-203ENST00000389856 CARD10Q9BWT7 1032 aa23.25■■□□□ 1.31
CCDC88C-203ENST00000389856 BCL2L13Q9BXK5 485 aa23.25■■□□□ 1.31
CCDC88C-203ENST00000389856 PIP4K2BP78356 416 aa23.24■■□□□ 1.31
CCDC88C-203ENST00000389856 FTSJ3Q8IY81 847 aaKnown RBP23.24■■□□□ 1.31
CCDC88C-203ENST00000389856 HSP90AB1P08238 724 aaKnown RBP23.23■■□□□ 1.31
CCDC88C-203ENST00000389856 C20orf194Q5TEA3 1177 aa23.23■■□□□ 1.31
CCDC88C-203ENST00000389856 TCERG1O14776 1098 aaKnown RBP23.22■■□□□ 1.31
CCDC88C-203ENST00000389856 C8orf58Q8NAV2 365 aa23.22■■□□□ 1.31
CCDC88C-203ENST00000389856 MEGF6O75095 1541 aa23.22■■□□□ 1.31
CCDC88C-203ENST00000389856 VIRMAQ69YN4 1812 aaKnown RBP23.22■■□□□ 1.31
CCDC88C-203ENST00000389856 ATF7IPQ6VMQ6 1270 aa23.21■■□□□ 1.31
CCDC88C-203ENST00000389856 IFNL2Q8IZJ0 200 aa23.21■■□□□ 1.31
CCDC88C-203ENST00000389856 ARHGAP45Q92619 1136 aa23.21■■□□□ 1.31
CCDC88C-203ENST00000389856 ANP32EQ9BTT0 268 aa23.21■■□□□ 1.31
CCDC88C-203ENST00000389856 ADAMTS7Q9UKP4 1686 aa23.21■■□□□ 1.31
CCDC88C-203ENST00000389856 RNMTO43148 476 aaKnown RBP23.2■■□□□ 1.3
CCDC88C-203ENST00000389856 DZIP1LQ8IYY4 767 aaKnown RBP23.2■■□□□ 1.3
CCDC88C-203ENST00000389856 TSPYL6Q8N831 410 aa23.2■■□□□ 1.3
CCDC88C-203ENST00000389856 ELL2O00472 640 aaPredicted RBP23.19■■□□□ 1.3
CCDC88C-203ENST00000389856 STRN4Q9NRL3 753 aa23.19■■□□□ 1.3
CCDC88C-203ENST00000389856 MPRIPQ6WCQ1 1025 aa23.18■■□□□ 1.3
CCDC88C-203ENST00000389856 MRPL50Q8N5N7 158 aaKnown RBP23.18■■□□□ 1.3
CCDC88C-203ENST00000389856 CHMP4BQ9H444 224 aaKnown RBP23.18■■□□□ 1.3
CCDC88C-203ENST00000389856 BTG4Q9NY30 223 aa23.18■■□□□ 1.3
CCDC88C-203ENST00000389856 NOB1Q9ULX3 412 aaKnown RBP23.18■■□□□ 1.3
CCDC88C-203ENST00000389856 KDM3BQ7LBC6 1761 aa23.18■■□□□ 1.3
CCDC88C-203ENST00000389856 IL2RBP14784 551 aa23.17■■□□□ 1.3
CCDC88C-203ENST00000389856 PHKG2P15735 406 aa23.17■■□□□ 1.3
CCDC88C-203ENST00000389856 SCN11AQ9UI33 1791 aa23.17■■□□□ 1.3
CCDC88C-203ENST00000389856 PCDH11XQ9BZA7 1347 aa23.16■■□□□ 1.3
CCDC88C-203ENST00000389856 PCDH11YQ9BZA8 1340 aa23.16■■□□□ 1.3
CCDC88C-203ENST00000389856 API5Q9BZZ5 524 aaKnown RBP23.16■■□□□ 1.3
CCDC88C-203ENST00000389856 PANK1Q8TE04 598 aa23.15■■□□□ 1.3
CCDC88C-203ENST00000389856 DCAF5Q96JK2 942 aa23.15■■□□□ 1.3
CCDC88C-203ENST00000389856 LGR6Q9HBX8 967 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms