RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 NSFL1CQ9UNZ2 370 aaKnown RBP17.94■□□□□ 0.46
VPS9D1-201ENST00000389386 ZFYVE9O95405 1425 aa17.94■□□□□ 0.46
VPS9D1-201ENST00000389386 EXOSC9Q06265 439 aaKnown RBP17.93■□□□□ 0.46
VPS9D1-201ENST00000389386 PIBF1Q8WXW3 757 aa17.93■□□□□ 0.46
VPS9D1-201ENST00000389386 ZDHHC9Q9Y397 364 aa17.93■□□□□ 0.46
VPS9D1-201ENST00000389386 KIF3AQ9Y496 699 aa17.93■□□□□ 0.46
VPS9D1-201ENST00000389386 A0A1W2PP64 1363 aa17.93■□□□□ 0.46
VPS9D1-201ENST00000389386 TXNDC2Q86VQ3 553 aa17.93■□□□□ 0.46
VPS9D1-201ENST00000389386 YTHDC2Q9H6S0 1430 aaKnown RBP17.93■□□□□ 0.46
VPS9D1-201ENST00000389386 ZBTB7CA1YPR0 619 aa17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 NOLC1Q14978 699 aaKnown RBP eCLIP17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 PAXIP1Q6ZW49 1069 aaPredicted RBP17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 TMEM2Q9UHN6 1383 aa17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 FBLN1P23142 703 aa17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 ANKRD45Q5TZF3 282 aa17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 IPO4Q8TEX9 1081 aaKnown RBP17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 SLC26A8Q96RN1 970 aa17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 ANKRD36BQ8N2N9 1353 aa17.92■□□□□ 0.46
VPS9D1-201ENST00000389386 ALKQ9UM73 1620 aa17.91■□□□□ 0.46
VPS9D1-201ENST00000389386 FAM177BA6PVY3 158 aa17.91■□□□□ 0.46
VPS9D1-201ENST00000389386 CDK19Q9BWU1 502 aa17.91■□□□□ 0.46
VPS9D1-201ENST00000389386 UBR1Q8IWV7 1749 aa17.91■□□□□ 0.46
VPS9D1-201ENST00000389386 BCL2L12Q9HB09 334 aa17.91■□□□□ 0.46
VPS9D1-201ENST00000389386 U2AF1L5P0DN76 240 aaPredicted RBP17.9■□□□□ 0.46
VPS9D1-201ENST00000389386 U2AF1Q01081 240 aaKnown RBP eCLIP17.9■□□□□ 0.46
VPS9D1-201ENST00000389386 TAF3Q5VWG9 929 aa17.9■□□□□ 0.46
VPS9D1-201ENST00000389386 CABP1Q9NZU7 370 aa17.9■□□□□ 0.46
VPS9D1-201ENST00000389386 PTPRMP28827 1452 aa17.9■□□□□ 0.46
VPS9D1-201ENST00000389386 SPDYE4A6NLX3 237 aa17.9■□□□□ 0.46
VPS9D1-201ENST00000389386 CDC45O75419 566 aa17.9■□□□□ 0.46
VPS9D1-201ENST00000389386 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.9■□□□□ 0.46
VPS9D1-201ENST00000389386 METP08581 1390 aa17.89■□□□□ 0.45
VPS9D1-201ENST00000389386 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.89■□□□□ 0.45
VPS9D1-201ENST00000389386 PDCL2Q8N4E4 241 aa17.89■□□□□ 0.45
VPS9D1-201ENST00000389386 CHAMP1Q96JM3 812 aa17.89■□□□□ 0.45
VPS9D1-201ENST00000389386 TSPY26PQ9H489 355 aa17.89■□□□□ 0.45
VPS9D1-201ENST00000389386 MBD3O95983 291 aa17.88■□□□□ 0.45
VPS9D1-201ENST00000389386 ZGPATQ8N5A5 531 aaKnown RBP17.88■□□□□ 0.45
VPS9D1-201ENST00000389386 GCC1Q96CN9 775 aa17.88■□□□□ 0.45
VPS9D1-201ENST00000389386 SPTLC3Q9NUV7 552 aa17.88■□□□□ 0.45
VPS9D1-201ENST00000389386 U2SURPO15042 1029 aaKnown RBP17.88■□□□□ 0.45
VPS9D1-201ENST00000389386 ZNF830Q96NB3 372 aaPredicted RBP17.88■□□□□ 0.45
VPS9D1-201ENST00000389386 HDGFP51858 240 aaKnown RBP17.87■□□□□ 0.45
VPS9D1-201ENST00000389386 FKBP5Q13451 457 aaPredicted RBP17.87■□□□□ 0.45
VPS9D1-201ENST00000389386 CFAP53Q96M91 514 aa17.87■□□□□ 0.45
VPS9D1-201ENST00000389386 FYB1O15117 783 aa17.86■□□□□ 0.45
VPS9D1-201ENST00000389386 IPO8O15397 1037 aaKnown RBP17.86■□□□□ 0.45
VPS9D1-201ENST00000389386 EID1Q9Y6B2 187 aa17.86■□□□□ 0.45
VPS9D1-201ENST00000389386 PPIP5K1Q6PFW1 1433 aa17.86■□□□□ 0.45
VPS9D1-201ENST00000389386 THEMISQ8N1K5 641 aaPredicted RBP17.85■□□□□ 0.45
VPS9D1-201ENST00000389386 C17orf53Q8N3J3 647 aaPredicted RBP17.85■□□□□ 0.45
VPS9D1-201ENST00000389386 MPNDQ8N594 471 aa17.85■□□□□ 0.45
VPS9D1-201ENST00000389386 USP26Q9BXU7 913 aa17.85■□□□□ 0.45
VPS9D1-201ENST00000389386 NCKAP5LQ9HCH0 1330 aa17.85■□□□□ 0.45
VPS9D1-201ENST00000389386 IGSF3O75054 1194 aa17.85■□□□□ 0.45
VPS9D1-201ENST00000389386 ANKRD7Q92527 254 aa17.85■□□□□ 0.45
VPS9D1-201ENST00000389386 TERF2IPQ9NYB0 399 aa17.84■□□□□ 0.45
VPS9D1-201ENST00000389386 ADAMTSL3P82987 1691 aa17.83■□□□□ 0.45
VPS9D1-201ENST00000389386 ADGRB2O60241 1585 aa17.83■□□□□ 0.45
VPS9D1-201ENST00000389386 U2AF2P26368 475 aaKnown RBP eCLIP17.83■□□□□ 0.45
VPS9D1-201ENST00000389386 TTC12Q9H892 705 aaPredicted RBP17.83■□□□□ 0.45
VPS9D1-201ENST00000389386 NRXN3Q9Y4C0 1643 aa17.83■□□□□ 0.44
VPS9D1-201ENST00000389386 ABCC11Q96J66 1382 aa17.82■□□□□ 0.44
VPS9D1-201ENST00000389386 GSPT1P15170 499 aaKnown RBP17.82■□□□□ 0.44
VPS9D1-201ENST00000389386 UVSSAQ2YD98 709 aa17.82■□□□□ 0.44
VPS9D1-201ENST00000389386 PUS7Q96PZ0 661 aaKnown RBP17.82■□□□□ 0.44
VPS9D1-201ENST00000389386 FEZ1Q99689 392 aa17.81■□□□□ 0.44
VPS9D1-201ENST00000389386 CGNQ9P2M7 1197 aaKnown RBP17.81■□□□□ 0.44
VPS9D1-201ENST00000389386 ZBTB7BO15156 539 aaPredicted RBP17.81■□□□□ 0.44
VPS9D1-201ENST00000389386 KLHL34Q8N239 644 aa17.81■□□□□ 0.44
VPS9D1-201ENST00000389386 TRIM35Q9UPQ4 493 aa17.81■□□□□ 0.44
VPS9D1-201ENST00000389386 ATAD2Q6PL18 1390 aa17.81■□□□□ 0.44
VPS9D1-201ENST00000389386 CD163L1Q9NR16 1453 aa17.8■□□□□ 0.44
VPS9D1-201ENST00000389386 ST18O60284 1047 aa17.8■□□□□ 0.44
VPS9D1-201ENST00000389386 HDGFL2Q7Z4V5 671 aaPredicted RBP17.8■□□□□ 0.44
VPS9D1-201ENST00000389386 MED14O60244 1454 aa17.8■□□□□ 0.44
VPS9D1-201ENST00000389386 NUTM2FA1L443 756 aa17.79■□□□□ 0.44
VPS9D1-201ENST00000389386 SIRT2Q8IXJ6 389 aa17.79■□□□□ 0.44
VPS9D1-201ENST00000389386 FAM184AQ8NB25 1140 aa17.79■□□□□ 0.44
VPS9D1-201ENST00000389386 CTIFO43310 598 aaKnown RBP17.79■□□□□ 0.44
VPS9D1-201ENST00000389386 ZNF771Q7L3S4 317 aaPredicted RBP17.79■□□□□ 0.44
VPS9D1-201ENST00000389386 SYAP1Q96A49 352 aaPredicted RBP17.79■□□□□ 0.44
VPS9D1-201ENST00000389386 CFAP44Q96MT7 982 aa17.79■□□□□ 0.44
VPS9D1-201ENST00000389386 RIOK3O14730 519 aaKnown RBP17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 FOXD4L5Q5VV16 416 aaPredicted RBP17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 FOXD4L4Q8WXT5 416 aaPredicted RBP17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 DIAPH3Q9NSV4 1193 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 OGFRQ9NZT2 677 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 ZRANB1Q9UGI0 708 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 USP25Q9UHP3 1055 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 IL16Q14005 1332 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 ADAMTS13Q76LX8 1427 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 TMPOP42166 694 aaKnown RBP17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 C1orf115Q9H7X2 142 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 SETD1AO15047 1707 aaKnown RBP17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 USP32Q8NFA0 1604 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 ADCY5O95622 1261 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 ALDH1L2Q3SY69 923 aa17.78■□□□□ 0.44
VPS9D1-201ENST00000389386 CEP170BQ9Y4F5 1589 aaPredicted RBP17.77■□□□□ 0.44
VPS9D1-201ENST00000389386 PLEKHM2Q8IWE5 1019 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms