RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 PLEKHO1Q53GL0 409 aaPredicted RBP34.87■■■■□ 3.17
MSX1-201ENST00000382723 NUTM2AQ8IVF1 878 aaPredicted RBP34.87■■■■□ 3.17
MSX1-201ENST00000382723 RAPGEF4Q8WZA2 1011 aa34.86■■■■□ 3.17
MSX1-201ENST00000382723 FAM208AQ9UK61 1670 aaKnown RBP34.85■■■■□ 3.17
MSX1-201ENST00000382723 GNAT3A8MTJ3 354 aa34.85■■■■□ 3.17
MSX1-201ENST00000382723 ADAMTS2O95450 1211 aa34.85■■■■□ 3.17
MSX1-201ENST00000382723 BTG4Q9NY30 223 aa34.85■■■■□ 3.17
MSX1-201ENST00000382723 AMOTQ4VCS5 1084 aa34.83■■■■□ 3.17
MSX1-201ENST00000382723 IFT57Q9NWB7 429 aa34.83■■■■□ 3.17
MSX1-201ENST00000382723 MAP3K5Q99683 1374 aa34.83■■■■□ 3.17
MSX1-201ENST00000382723 GNAI1P63096 354 aa34.83■■■■□ 3.17
MSX1-201ENST00000382723 LARP1Q6PKG0 1096 aaKnown RBP34.82■■■■□ 3.16
MSX1-201ENST00000382723 TATP17735 454 aaPredicted RBP34.81■■■■□ 3.16
MSX1-201ENST00000382723 ZNF530Q6P9A1 599 aaPredicted RBP34.81■■■■□ 3.16
MSX1-201ENST00000382723 RNF123Q5XPI4 1314 aa34.81■■■■□ 3.16
MSX1-201ENST00000382723 HTATSF1O43719 755 aaKnown RBP34.81■■■■□ 3.16
MSX1-201ENST00000382723 EXOSC9Q06265 439 aaKnown RBP34.79■■■■□ 3.16
MSX1-201ENST00000382723 CFAP44Q96MT7 982 aa34.79■■■■□ 3.16
MSX1-201ENST00000382723 COL14A1Q05707 1796 aaKnown RBP34.79■■■■□ 3.16
MSX1-201ENST00000382723 ZNF853P0CG23 659 aa34.79■■■■□ 3.16
MSX1-201ENST00000382723 MEGF6O75095 1541 aa34.78■■■■□ 3.16
MSX1-201ENST00000382723 RRP1P56182 461 aaKnown RBP34.77■■■■□ 3.16
MSX1-201ENST00000382723 MBIPQ9NS73 344 aa34.77■■■■□ 3.16
MSX1-201ENST00000382723 JCADQ9P266 1359 aa34.76■■■■□ 3.16
MSX1-201ENST00000382723 CARD10Q9BWT7 1032 aa34.76■■■■□ 3.15
MSX1-201ENST00000382723 CRB1P82279 1406 aa34.75■■■■□ 3.15
MSX1-201ENST00000382723 AKAP4Q5JQC9 854 aa34.75■■■■□ 3.15
MSX1-201ENST00000382723 C1orf141Q5JVX7 400 aa34.75■■■■□ 3.15
MSX1-201ENST00000382723 IL17REQ8NFR9 667 aa34.75■■■■□ 3.15
MSX1-201ENST00000382723 USP35Q9P2H5 1018 aa34.72■■■■□ 3.15
MSX1-201ENST00000382723 SPG7Q9UQ90 795 aa34.71■■■■□ 3.15
MSX1-201ENST00000382723 HSPA1LP34931 641 aa34.71■■■■□ 3.15
MSX1-201ENST00000382723 PLIN1O60240 522 aa34.7■■■■□ 3.15
MSX1-201ENST00000382723 CHL1O00533 1208 aa34.69■■■■□ 3.14
MSX1-201ENST00000382723 BCAR3O75815 825 aa34.69■■■■□ 3.14
MSX1-201ENST00000382723 MPRIPQ6WCQ1 1025 aa34.69■■■■□ 3.14
MSX1-201ENST00000382723 MIS18AQ9NYP9 233 aa34.69■■■■□ 3.14
MSX1-201ENST00000382723 LGR6Q9HBX8 967 aa34.69■■■■□ 3.14
MSX1-201ENST00000382723 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP34.67■■■■□ 3.14
MSX1-201ENST00000382723 CT47B1P0C2W7 299 aaPredicted RBP34.66■■■■□ 3.14
MSX1-201ENST00000382723 RARSP54136 660 aaKnown RBP34.66■■■■□ 3.14
MSX1-201ENST00000382723 IL2RBP14784 551 aa34.65■■■■□ 3.14
MSX1-201ENST00000382723 TSPYL4Q9UJ04 414 aa34.65■■■■□ 3.14
MSX1-201ENST00000382723 OVOS2A0A0G2JMS6 1433 aa34.64■■■■□ 3.14
MSX1-201ENST00000382723 LRRC37A3O60309 1634 aa34.64■■■■□ 3.14
MSX1-201ENST00000382723 CEMIPQ8WUJ3 1361 aa34.63■■■■□ 3.13
MSX1-201ENST00000382723 PLEKHG2Q9H7P9 1386 aa34.63■■■■□ 3.13
MSX1-201ENST00000382723 PLCH1Q4KWH8 1693 aa34.63■■■■□ 3.13
MSX1-201ENST00000382723 BCL2L13Q9BXK5 485 aa34.63■■■■□ 3.13
MSX1-201ENST00000382723 ELL2O00472 640 aaPredicted RBP34.62■■■■□ 3.13
MSX1-201ENST00000382723 RNMTO43148 476 aaKnown RBP34.62■■■■□ 3.13
MSX1-201ENST00000382723 PHKG2P15735 406 aa34.61■■■■□ 3.13
MSX1-201ENST00000382723 TAF7Q15545 349 aaPredicted RBP34.61■■■■□ 3.13
MSX1-201ENST00000382723 TSPYL6Q8N831 410 aa34.61■■■■□ 3.13
MSX1-201ENST00000382723 IFNL2Q8IZJ0 200 aa34.6■■■■□ 3.13
MSX1-201ENST00000382723 C8orf58Q8NAV2 365 aa34.6■■■■□ 3.13
MSX1-201ENST00000382723 SPATA31A6Q5VVP1 1343 aa34.6■■■■□ 3.13
MSX1-201ENST00000382723 ZCRB1Q8TBF4 217 aaKnown RBP34.59■■■■□ 3.13
MSX1-201ENST00000382723 GOLGA6L2Q8N9W4 650 aaPredicted RBP34.59■■■■□ 3.13
MSX1-201ENST00000382723 C8orf37Q96NL8 207 aa34.59■■■■□ 3.13
MSX1-201ENST00000382723 PARP4Q9UKK3 1724 aaKnown RBP34.58■■■■□ 3.13
MSX1-201ENST00000382723 CYP27B1O15528 508 aa34.58■■■■□ 3.13
MSX1-201ENST00000382723 TEFQ10587 303 aa34.58■■■■□ 3.13
MSX1-201ENST00000382723 KRT24Q2M2I5 525 aa34.57■■■■□ 3.12
MSX1-201ENST00000382723 TWISTNBQ3B726 338 aaPredicted RBP34.57■■■■□ 3.12
MSX1-201ENST00000382723 PKD1L3Q7Z443 1732 aa34.57■■■■□ 3.12
MSX1-201ENST00000382723 VAMP4O75379 141 aa34.55■■■■□ 3.12
MSX1-201ENST00000382723 NGLY1Q96IV0 654 aa34.55■■■■□ 3.12
MSX1-201ENST00000382723 SLIT2O94813 1529 aa34.54■■■■□ 3.12
MSX1-201ENST00000382723 SSH1Q8WYL5 1049 aa34.54■■■■□ 3.12
MSX1-201ENST00000382723 FRAT1Q92837 279 aaPredicted RBP34.54■■■■□ 3.12
MSX1-201ENST00000382723 SMC4Q9NTJ3 1288 aa34.54■■■■□ 3.12
MSX1-201ENST00000382723 PCDH11XQ9BZA7 1347 aa34.53■■■■□ 3.12
MSX1-201ENST00000382723 PCDH11YQ9BZA8 1340 aa34.53■■■■□ 3.12
MSX1-201ENST00000382723 NRAPQ86VF7 1730 aa34.53■■■■□ 3.12
MSX1-201ENST00000382723 CANXP27824 592 aaKnown RBP34.53■■■■□ 3.12
MSX1-201ENST00000382723 LRP6O75581 1613 aa34.53■■■■□ 3.12
MSX1-201ENST00000382723 C20orf194Q5TEA3 1177 aa34.52■■■■□ 3.12
MSX1-201ENST00000382723 BABAM1Q9NWV8 329 aa34.52■■■■□ 3.12
MSX1-201ENST00000382723 KDM6AO15550 1401 aaPredicted RBP34.51■■■■□ 3.12
MSX1-201ENST00000382723 DDX54Q8TDD1 881 aaKnown RBP34.51■■■■□ 3.11
MSX1-201ENST00000382723 CCDC9Q9Y3X0 531 aaKnown RBP34.5■■■■□ 3.11
MSX1-201ENST00000382723 DCAF5Q96JK2 942 aa34.49■■■■□ 3.11
MSX1-201ENST00000382723 BTBD11A6QL63 1104 aa34.49■■■■□ 3.11
MSX1-201ENST00000382723 HSP90AB1P08238 724 aaKnown RBP34.49■■■■□ 3.11
MSX1-201ENST00000382723 ERICH6BQ5W0A0 696 aa34.49■■■■□ 3.11
MSX1-201ENST00000382723 ZNF428Q96B54 188 aa34.49■■■■□ 3.11
MSX1-201ENST00000382723 SPATA31A1Q5TZJ5 1347 aa34.48■■■■□ 3.11
MSX1-201ENST00000382723 ALDH1L2Q3SY69 923 aa34.47■■■■□ 3.11
MSX1-201ENST00000382723 UNC5CLQ8IV45 518 aa34.47■■■■□ 3.11
MSX1-201ENST00000382723 NWD2Q9ULI1 1742 aa34.47■■■■□ 3.11
MSX1-201ENST00000382723 DISP2A7MBM2 1401 aa34.47■■■■□ 3.11
MSX1-201ENST00000382723 TCERG1O14776 1098 aaKnown RBP34.46■■■■□ 3.11
MSX1-201ENST00000382723 MEX3CQ5U5Q3 659 aaKnown RBP34.46■■■■□ 3.11
MSX1-201ENST00000382723 ADAMTS7Q9UKP4 1686 aa34.45■■■■□ 3.11
MSX1-201ENST00000382723 SPATA31A5Q5VU36 1347 aa34.44■■■■□ 3.1
MSX1-201ENST00000382723 SPATA31A7Q8IWB4 1347 aa34.44■■■■□ 3.1
MSX1-201ENST00000382723 EXOC6Q8TAG9 804 aa34.44■■■■□ 3.1
MSX1-201ENST00000382723 SLC52A2Q9HAB3 445 aa34.43■■■■□ 3.1
MSX1-201ENST00000382723 CRBNQ96SW2 442 aa34.43■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms