RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 MX1P20591 662 aa15.87■□□□□ 0.13
NPHP4-203ENST00000378169 PSMA5P28066 241 aa15.87■□□□□ 0.13
NPHP4-203ENST00000378169 STK3Q13188 491 aa15.87■□□□□ 0.13
NPHP4-203ENST00000378169 KIF6Q6ZMV9 814 aa15.87■□□□□ 0.13
NPHP4-203ENST00000378169 TBC1D2Q9BYX2 928 aa15.87■□□□□ 0.13
NPHP4-203ENST00000378169 SPATA31E1Q6ZUB1 1445 aa15.87■□□□□ 0.13
NPHP4-203ENST00000378169 MBD5Q9P267 1494 aa15.87■□□□□ 0.13
NPHP4-203ENST00000378169 MCM4P33991 863 aa15.86■□□□□ 0.13
NPHP4-203ENST00000378169 MCM2P49736 904 aa15.86■□□□□ 0.13
NPHP4-203ENST00000378169 TRIM29Q14134 588 aa15.86■□□□□ 0.13
NPHP4-203ENST00000378169 CHRNA2Q15822 529 aa15.86■□□□□ 0.13
NPHP4-203ENST00000378169 MEIS3Q99687 375 aa15.86■□□□□ 0.13
NPHP4-203ENST00000378169 IL16Q14005 1332 aa15.86■□□□□ 0.13
NPHP4-203ENST00000378169 CHMP4CQ96CF2 233 aa15.86■□□□□ 0.13
NPHP4-203ENST00000378169 CNNM1Q9NRU3 951 aa15.86■□□□□ 0.13
NPHP4-203ENST00000378169 NASPP49321 788 aaPredicted RBP15.85■□□□□ 0.13
NPHP4-203ENST00000378169 KRT28Q7Z3Y7 464 aa15.85■□□□□ 0.13
NPHP4-203ENST00000378169 DNAAF4Q8WXU2 420 aa15.85■□□□□ 0.13
NPHP4-203ENST00000378169 RAD21O60216 631 aa15.85■□□□□ 0.13
NPHP4-203ENST00000378169 MRE11P49959 708 aa15.85■□□□□ 0.13
NPHP4-203ENST00000378169 IL27Q8NEV9 243 aa15.85■□□□□ 0.13
NPHP4-203ENST00000378169 PI4KAP2A4QPH2 592 aa15.85■□□□□ 0.13
NPHP4-203ENST00000378169 FKBP4Q02790 459 aaKnown RBP eCLIP15.85■□□□□ 0.13
NPHP4-203ENST00000378169 PI4KAP1Q8N8J0 262 aa15.85■□□□□ 0.13
NPHP4-203ENST00000378169 KIF1BPQ96EK5 621 aa15.85■□□□□ 0.13
NPHP4-203ENST00000378169 PIK3C2GO75747 1445 aa15.84■□□□□ 0.13
NPHP4-203ENST00000378169 CYP46A1Q9Y6A2 500 aa15.84■□□□□ 0.13
NPHP4-203ENST00000378169 AMOTQ4VCS5 1084 aa15.84■□□□□ 0.13
NPHP4-203ENST00000378169 CLSTN1O94985 981 aa15.83■□□□□ 0.13
NPHP4-203ENST00000378169 CCDC57Q2TAC2 916 aa15.83■□□□□ 0.13
NPHP4-203ENST00000378169 MEX3CQ5U5Q3 659 aaKnown RBP15.83■□□□□ 0.13
NPHP4-203ENST00000378169 CEBPZQ03701 1054 aaKnown RBP15.83■□□□□ 0.12
NPHP4-203ENST00000378169 BOLA2Q9H3K6 86 aa15.83■□□□□ 0.12
NPHP4-203ENST00000378169 HIP1O00291 1037 aa15.83■□□□□ 0.12
NPHP4-203ENST00000378169 PES1O00541 588 aaKnown RBP15.83■□□□□ 0.12
NPHP4-203ENST00000378169 TBC1D9Q6ZT07 1266 aa15.83■□□□□ 0.12
NPHP4-203ENST00000378169 JAKMIP1Q96N16 626 aaKnown RBP15.83■□□□□ 0.12
NPHP4-203ENST00000378169 MYD88Q99836 296 aa15.83■□□□□ 0.12
NPHP4-203ENST00000378169 DBF4Q9UBU7 674 aaPredicted RBP15.83■□□□□ 0.12
NPHP4-203ENST00000378169 STK11IPQ8N1F8 1099 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 CCDC8Q9H0W5 538 aaPredicted RBP15.82■□□□□ 0.12
NPHP4-203ENST00000378169 ZMYM3Q14202 1370 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 MARCH6O60337 910 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 KCNA6P17658 529 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 MTMR7Q9Y216 660 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 ATP7AQ04656 1500 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 VAMP4O75379 141 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 CCDC158Q5M9N0 1113 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 PUS7Q96PZ0 661 aaKnown RBP15.82■□□□□ 0.12
NPHP4-203ENST00000378169 CEP126Q9P2H0 1117 aa15.82■□□□□ 0.12
NPHP4-203ENST00000378169 YTHDC2Q9H6S0 1430 aaKnown RBP15.81■□□□□ 0.12
NPHP4-203ENST00000378169 ATP2B1P20020 1258 aa15.81■□□□□ 0.12
NPHP4-203ENST00000378169 MTHFSDQ2M296 383 aaKnown RBP15.81■□□□□ 0.12
NPHP4-203ENST00000378169 JARID2Q92833 1246 aaPredicted RBP15.81■□□□□ 0.12
NPHP4-203ENST00000378169 TBC1D2BQ9UPU7 963 aa15.81■□□□□ 0.12
NPHP4-203ENST00000378169 EIF2AK4Q9P2K8 1649 aaKnown RBP15.81■□□□□ 0.12
NPHP4-203ENST00000378169 PTPRCP08575 1304 aa15.81■□□□□ 0.12
NPHP4-203ENST00000378169 ERICH2A1L162 156 aa15.81■□□□□ 0.12
NPHP4-203ENST00000378169 RRP12Q5JTH9 1297 aaKnown RBP15.81■□□□□ 0.12
NPHP4-203ENST00000378169 TTC39AQ5SRH9 613 aa15.8■□□□□ 0.12
NPHP4-203ENST00000378169 LARP1Q6PKG0 1096 aaKnown RBP15.8■□□□□ 0.12
NPHP4-203ENST00000378169 CCDC73Q6ZRK6 1079 aa15.8■□□□□ 0.12
NPHP4-203ENST00000378169 ANKRD24Q8TF21 1146 aa15.8■□□□□ 0.12
NPHP4-203ENST00000378169 BMP2KLQ5H9B9 411 aa15.8■□□□□ 0.12
NPHP4-203ENST00000378169 LRRC59Q96AG4 307 aaKnown RBP15.8■□□□□ 0.12
NPHP4-203ENST00000378169 BLOC1S2Q6QNY1 142 aa15.8■□□□□ 0.12
NPHP4-203ENST00000378169 MPNDQ8N594 471 aa15.8■□□□□ 0.12
NPHP4-203ENST00000378169 NOL10Q9BSC4 688 aaKnown RBP15.8■□□□□ 0.12
NPHP4-203ENST00000378169 DHX16O60231 1041 aaKnown RBP15.79■□□□□ 0.12
NPHP4-203ENST00000378169 GLRX3O76003 335 aaKnown RBP15.79■□□□□ 0.12
NPHP4-203ENST00000378169 VPS53Q5VIR6 699 aa15.79■□□□□ 0.12
NPHP4-203ENST00000378169 LARP6Q9BRS8 491 aaKnown RBP15.79■□□□□ 0.12
NPHP4-203ENST00000378169 HDAC1Q13547 482 aaPredicted RBP15.79■□□□□ 0.12
NPHP4-203ENST00000378169 SASS6Q6UVJ0 657 aa15.79■□□□□ 0.12
NPHP4-203ENST00000378169 PPP1R42Q7Z4L9 355 aa15.79■□□□□ 0.12
NPHP4-203ENST00000378169 CWC22Q9HCG8 908 aaKnown RBP15.79■□□□□ 0.12
NPHP4-203ENST00000378169 NPATQ14207 1427 aa15.79■□□□□ 0.12
NPHP4-203ENST00000378169 PIP4K2BP78356 416 aa15.79■□□□□ 0.12
NPHP4-203ENST00000378169 MRPL50Q8N5N7 158 aaKnown RBP15.79■□□□□ 0.12
NPHP4-203ENST00000378169 SDF4Q9BRK5 362 aa15.79■□□□□ 0.12
NPHP4-203ENST00000378169 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.79■□□□□ 0.129e-7■■■■■ 44.3
NPHP4-203ENST00000378169 MBD3O95983 291 aa15.79■□□□□ 0.12
NPHP4-203ENST00000378169 C8orf34Q49A92 452 aa15.79■□□□□ 0.12
NPHP4-203ENST00000378169 ATP5J2-PTCD1G3V325 749 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 PDCP20941 246 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 C16orf71Q8IYS4 520 aaPredicted RBP15.78■□□□□ 0.12
NPHP4-203ENST00000378169 KAT6BQ8WYB5 2073 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 ARHGAP45Q92619 1136 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 TBC1D32Q96NH3 1257 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 EYA1Q99502 592 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 MAP3K2Q9Y2U5 619 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 MAP3K19Q56UN5 1328 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 MAST1Q9Y2H9 1570 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 SLC39A6Q13433 755 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 RSPH6AQ9H0K4 717 aa15.78■□□□□ 0.12
NPHP4-203ENST00000378169 CASTP20810 708 aaKnown RBP15.77■□□□□ 0.12
NPHP4-203ENST00000378169 ZBTB3Q9H5J0 574 aa15.77■□□□□ 0.12
NPHP4-203ENST00000378169 TPD52L1Q16890 204 aaPredicted RBP15.77■□□□□ 0.12
NPHP4-203ENST00000378169 MPHOSPH8Q99549 860 aa15.77■□□□□ 0.12
NPHP4-203ENST00000378169 A0A087WZG4 1122 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms