RNA–Protein interactions for RNA: ENST00000377342.9

CBWD3-202, Transcript of COBW domain containing 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CBWD3, Length 1,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-202ENST00000377342 PNNQ9H307 717 aaKnown RBP28.23■■■□□ 2.11
CBWD3-202ENST00000377342 MAPK8IP3Q9UPT6 1336 aa28.22■■■□□ 2.11
CBWD3-202ENST00000377342 ZNF772Q68DY9 489 aaPredicted RBP28.22■■■□□ 2.11
CBWD3-202ENST00000377342 BARGINQ6ZT62 677 aa28.22■■■□□ 2.11
CBWD3-202ENST00000377342 GJD4Q96KN9 370 aaPredicted RBP28.22■■■□□ 2.11
CBWD3-202ENST00000377342 VIRMAQ69YN4 1812 aaKnown RBP28.22■■■□□ 2.11
CBWD3-202ENST00000377342 TATP17735 454 aaPredicted RBP28.21■■■□□ 2.11
CBWD3-202ENST00000377342 SENP3-EIF4A1A0A087X0R7 540 aa28.2■■■□□ 2.11
CBWD3-202ENST00000377342 QTRT2Q9H974 415 aaKnown RBP28.2■■■□□ 2.11
CBWD3-202ENST00000377342 TNS2Q63HR2 1409 aa28.2■■■□□ 2.1
CBWD3-202ENST00000377342 APAF1O14727 1248 aa28.19■■■□□ 2.1
CBWD3-202ENST00000377342 MTHFSDQ2M296 383 aaKnown RBP28.18■■■□□ 2.1
CBWD3-202ENST00000377342 FAM98CQ17RN3 349 aaKnown RBP28.17■■■□□ 2.1
CBWD3-202ENST00000377342 RRP7AQ9Y3A4 280 aaKnown RBP28.16■■■□□ 2.1
CBWD3-202ENST00000377342 ADAMTS7Q9UKP4 1686 aa28.15■■■□□ 2.1
CBWD3-202ENST00000377342 TMPOP42166 694 aaKnown RBP28.15■■■□□ 2.1
CBWD3-202ENST00000377342 NFE2L2Q16236 605 aa28.15■■■□□ 2.1
CBWD3-202ENST00000377342 CDCA7Q9BWT1 371 aaPredicted RBP28.15■■■□□ 2.1
CBWD3-202ENST00000377342 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.15■■■□□ 2.1
CBWD3-202ENST00000377342 NEFMP07197 916 aa28.14■■■□□ 2.1
CBWD3-202ENST00000377342 PLEKHO1Q53GL0 409 aaPredicted RBP28.14■■■□□ 2.1
CBWD3-202ENST00000377342 AMOTQ4VCS5 1084 aa28.13■■■□□ 2.09
CBWD3-202ENST00000377342 BRWD3Q6RI45 1802 aa28.13■■■□□ 2.09
CBWD3-202ENST00000377342 GAS2L2Q8NHY3 880 aa28.13■■■□□ 2.09
CBWD3-202ENST00000377342 PHF23Q9BUL5 403 aaPredicted RBP28.13■■■□□ 2.09
CBWD3-202ENST00000377342 POTEAQ6S8J7 498 aa28.11■■■□□ 2.09
CBWD3-202ENST00000377342 ZCRB1Q8TBF4 217 aaKnown RBP28.11■■■□□ 2.09
CBWD3-202ENST00000377342 SPG7Q9UQ90 795 aa28.11■■■□□ 2.09
CBWD3-202ENST00000377342 SCN11AQ9UI33 1791 aa28.11■■■□□ 2.09
CBWD3-202ENST00000377342 ONECUT3O60422 494 aaPredicted RBP28.1■■■□□ 2.09
CBWD3-202ENST00000377342 HNRNPUQ00839 825 aaKnown RBP eCLIP28.1■■■□□ 2.09
CBWD3-202ENST00000377342 ZNF530Q6P9A1 599 aaPredicted RBP28.1■■■□□ 2.09
CBWD3-202ENST00000377342 TOGARAM1Q9Y4F4 1720 aa28.1■■■□□ 2.09
CBWD3-202ENST00000377342 MAP3K5Q99683 1374 aa28.1■■■□□ 2.09
CBWD3-202ENST00000377342 CYP27B1O15528 508 aa28.1■■■□□ 2.09
CBWD3-202ENST00000377342 PCDH11XQ9BZA7 1347 aa28.09■■■□□ 2.09
CBWD3-202ENST00000377342 PCDH11YQ9BZA8 1340 aa28.09■■■□□ 2.09
CBWD3-202ENST00000377342 RBM6P78332 1123 aaKnown RBP28.09■■■□□ 2.09
CBWD3-202ENST00000377342 NEUROD2Q15784 382 aa28.09■■■□□ 2.09
CBWD3-202ENST00000377342 RIPK4P57078 832 aa28.07■■■□□ 2.08
CBWD3-202ENST00000377342 YTHDC1Q96MU7 727 aaKnown RBP28.07■■■□□ 2.08
CBWD3-202ENST00000377342 PHKG2P15735 406 aa28.07■■■□□ 2.08
CBWD3-202ENST00000377342 TRIM35Q9UPQ4 493 aa28.07■■■□□ 2.08
CBWD3-202ENST00000377342 KDM6AO15550 1401 aaPredicted RBP28.06■■■□□ 2.08
CBWD3-202ENST00000377342 DDB1Q16531 1140 aa28.06■■■□□ 2.08
CBWD3-202ENST00000377342 SALL2Q9Y467 1007 aaPredicted RBP28.06■■■□□ 2.08
CBWD3-202ENST00000377342 AKAP4Q5JQC9 854 aa28.05■■■□□ 2.08
CBWD3-202ENST00000377342 RGS12O14924 1447 aa28.05■■■□□ 2.08
CBWD3-202ENST00000377342 SIPA1L3O60292 1781 aaPredicted RBP28.04■■■□□ 2.08
CBWD3-202ENST00000377342 NCBP3Q53F19 620 aaKnown RBP28.04■■■□□ 2.08
CBWD3-202ENST00000377342 DOT1LQ8TEK3 1739 aa28.04■■■□□ 2.08
CBWD3-202ENST00000377342 EXOC5O00471 708 aa28.03■■■□□ 2.08
CBWD3-202ENST00000377342 ZNF521Q96K83 1311 aa28.03■■■□□ 2.08
CBWD3-202ENST00000377342 GNAT3A8MTJ3 354 aa28.03■■■□□ 2.08
CBWD3-202ENST00000377342 CCDC27Q2M243 656 aa28.03■■■□□ 2.08
CBWD3-202ENST00000377342 C1orf141Q5JVX7 400 aa28.03■■■□□ 2.08
CBWD3-202ENST00000377342 IFNL2Q8IZJ0 200 aa28.03■■■□□ 2.08
CBWD3-202ENST00000377342 A0A0G2JS52 829 aa28.02■■■□□ 2.08
CBWD3-202ENST00000377342 MYT1Q01538 1121 aa28.02■■■□□ 2.08
CBWD3-202ENST00000377342 SEPT12Q8IYM1 358 aa28.02■■■□□ 2.08
CBWD3-202ENST00000377342 RXRBP28702 533 aa28.01■■■□□ 2.07
CBWD3-202ENST00000377342 NGEFQ8N5V2 710 aa28.01■■■□□ 2.07
CBWD3-202ENST00000377342 DDX54Q8TDD1 881 aaKnown RBP28.01■■■□□ 2.07
CBWD3-202ENST00000377342 MRC1P22897 1456 aa28.01■■■□□ 2.07
CBWD3-202ENST00000377342 ZBED9Q6R2W3 1325 aa28.01■■■□□ 2.07
CBWD3-202ENST00000377342 CEMIPQ8WUJ3 1361 aa28■■■□□ 2.07
CBWD3-202ENST00000377342 DCTN1Q14203 1278 aa28■■■□□ 2.07
CBWD3-202ENST00000377342 WWC1Q8IX03 1113 aa28■■■□□ 2.07
CBWD3-202ENST00000377342 ITGB4P16144 1822 aa27.99■■■□□ 2.07
CBWD3-202ENST00000377342 MCM10Q7L590 875 aa27.99■■■□□ 2.07
CBWD3-202ENST00000377342 MARCH10Q8NA82 808 aaPredicted RBP27.99■■■□□ 2.07
CBWD3-202ENST00000377342 THUMPD2Q9BTF0 503 aaKnown RBP27.99■■■□□ 2.07
CBWD3-202ENST00000377342 HTATSF1O43719 755 aaKnown RBP27.98■■■□□ 2.07
CBWD3-202ENST00000377342 LMOD3Q0VAK6 560 aa27.98■■■□□ 2.07
CBWD3-202ENST00000377342 NKX1-1Q15270 411 aaPredicted RBP27.97■■■□□ 2.07
CBWD3-202ENST00000377342 MPRIPQ6WCQ1 1025 aa27.97■■■□□ 2.07
CBWD3-202ENST00000377342 IL17REQ8NFR9 667 aa27.97■■■□□ 2.07
CBWD3-202ENST00000377342 LGR6Q9HBX8 967 aa27.96■■■□□ 2.07
CBWD3-202ENST00000377342 SBF2Q86WG5 1849 aa27.95■■■□□ 2.07
CBWD3-202ENST00000377342 RNMTO43148 476 aaKnown RBP27.94■■■□□ 2.06
CBWD3-202ENST00000377342 RTF1Q92541 710 aaKnown RBP27.94■■■□□ 2.06
CBWD3-202ENST00000377342 DCAF5Q96JK2 942 aa27.94■■■□□ 2.06
CBWD3-202ENST00000377342 HSP90AB1P08238 724 aaKnown RBP27.93■■■□□ 2.06
CBWD3-202ENST00000377342 EP400Q96L91 3159 aa27.93■■■□□ 2.06
CBWD3-202ENST00000377342 KDM3BQ7LBC6 1761 aa27.92■■■□□ 2.06
CBWD3-202ENST00000377342 PDE3BQ13370 1112 aa27.91■■■□□ 2.06
CBWD3-202ENST00000377342 NHSQ6T4R5 1651 aa27.91■■■□□ 2.06
CBWD3-202ENST00000377342 PAPPAQ13219 1627 aa27.91■■■□□ 2.06
CBWD3-202ENST00000377342 BCL9O00512 1426 aa27.9■■■□□ 2.06
CBWD3-202ENST00000377342 KAT6BQ8WYB5 2073 aa27.9■■■□□ 2.06
CBWD3-202ENST00000377342 FAM182BQ5T319 152 aa27.88■■■□□ 2.05
CBWD3-202ENST00000377342 WDR63Q8IWG1 891 aa27.88■■■□□ 2.05
CBWD3-202ENST00000377342 SPINK5Q9NQ38 1064 aaPredicted RBP27.88■■■□□ 2.05
CBWD3-202ENST00000377342 KRT27Q7Z3Y8 459 aa27.87■■■□□ 2.05
CBWD3-202ENST00000377342 IL16Q14005 1332 aa27.86■■■□□ 2.05
CBWD3-202ENST00000377342 CDCA7LQ96GN5 454 aa27.85■■■□□ 2.05
CBWD3-202ENST00000377342 SLC52A2Q9HAB3 445 aa27.84■■■□□ 2.05
CBWD3-202ENST00000377342 ERVV-2B6SEH9 535 aa27.84■■■□□ 2.05
CBWD3-202ENST00000377342 GOLGA2Q08379 1002 aa27.84■■■□□ 2.05
CBWD3-202ENST00000377342 UBR2Q8IWV8 1755 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms