RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 SYCP1Q15431 976 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 FILIP1LQ4L180 1135 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 AMOTQ4VCS5 1084 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 PAF1Q8N7H5 531 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 ANKIB1Q9P2G1 1089 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 MNS1Q8NEH6 495 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 RUFY1Q96T51 708 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 BCL11BQ9C0K0 894 aaPredicted RBP16.16■□□□□ 0.18
GPC6-201ENST00000377047 JMYQ8N9B5 988 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 AIDAQ96BJ3 306 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 CTNNA3Q9UI47 895 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 PPP6R1Q9UPN7 881 aa16.16■□□□□ 0.18
GPC6-201ENST00000377047 NUTM1Q86Y26 1132 aa16.15■□□□□ 0.18
GPC6-201ENST00000377047 CAGE1Q8TC20 777 aa16.15■□□□□ 0.18
GPC6-201ENST00000377047 PRPF40AO75400 957 aaKnown RBP16.15■□□□□ 0.18
GPC6-201ENST00000377047 AKNAQ7Z591 1439 aa16.15■□□□□ 0.18
GPC6-201ENST00000377047 LETM1O95202 739 aaPredicted RBP16.15■□□□□ 0.18
GPC6-201ENST00000377047 CAVIN1Q6NZI2 390 aaKnown RBP16.15■□□□□ 0.18
GPC6-201ENST00000377047 FANCIQ9NVI1 1328 aa16.15■□□□□ 0.18
GPC6-201ENST00000377047 CCDC173Q0VFZ6 552 aa16.15■□□□□ 0.18
GPC6-201ENST00000377047 KRT28Q7Z3Y7 464 aa16.15■□□□□ 0.18
GPC6-201ENST00000377047 WASLO00401 505 aaPredicted RBP16.14■□□□□ 0.18
GPC6-201ENST00000377047 TAF7Q15545 349 aaPredicted RBP16.14■□□□□ 0.18
GPC6-201ENST00000377047 CAVIN4Q5BKX8 364 aa16.14■□□□□ 0.18
GPC6-201ENST00000377047 TRIM5Q9C035 493 aa16.14■□□□□ 0.17
GPC6-201ENST00000377047 LARP1Q6PKG0 1096 aaKnown RBP16.14■□□□□ 0.17
GPC6-201ENST00000377047 BLOC1S2Q6QNY1 142 aa16.14■□□□□ 0.17
GPC6-201ENST00000377047 PTPN23Q9H3S7 1636 aa16.14■□□□□ 0.17
GPC6-201ENST00000377047 LRPPRCP42704 1394 aaKnown RBP16.14■□□□□ 0.17
GPC6-201ENST00000377047 USP5P45974 858 aa16.14■□□□□ 0.17
GPC6-201ENST00000377047 NOL7Q9UMY1 257 aaKnown RBP16.14■□□□□ 0.17
GPC6-201ENST00000377047 EXOC5O00471 708 aa16.14■□□□□ 0.17
GPC6-201ENST00000377047 ZNF76P36508 570 aa16.14■□□□□ 0.17
GPC6-201ENST00000377047 AEBP1Q8IUX7 1158 aa16.13■□□□□ 0.17
GPC6-201ENST00000377047 ZNF219Q9P2Y4 722 aaPredicted RBP16.13■□□□□ 0.17
GPC6-201ENST00000377047 IDI1Q13907 227 aa16.13■□□□□ 0.17
GPC6-201ENST00000377047 DENND4BO75064 1496 aaPredicted RBP16.13■□□□□ 0.17
GPC6-201ENST00000377047 JAKMIP1Q96N16 626 aaKnown RBP16.13■□□□□ 0.17
GPC6-201ENST00000377047 AKAP2Q9Y2D5 859 aa16.13■□□□□ 0.17
GPC6-201ENST00000377047 DMRT2Q9Y5R5 561 aa16.13■□□□□ 0.17
GPC6-201ENST00000377047 PDRG1Q9NUG6 133 aa16.13■□□□□ 0.17
GPC6-201ENST00000377047 EMILIN1Q9Y6C2 1016 aa16.13■□□□□ 0.17
GPC6-201ENST00000377047 ME1P48163 572 aa16.13■□□□□ 0.17
GPC6-201ENST00000377047 SMARCE1Q969G3 411 aa16.13■□□□□ 0.17
GPC6-201ENST00000377047 CDKL5O76039 1030 aa16.12■□□□□ 0.17
GPC6-201ENST00000377047 SETQ01105 290 aaPredicted RBP16.12■□□□□ 0.17
GPC6-201ENST00000377047 TMEM57Q8N5G2 664 aa16.12■□□□□ 0.17
GPC6-201ENST00000377047 RPGRQ92834 1020 aaKnown RBP16.12■□□□□ 0.17
GPC6-201ENST00000377047 EXOC6BQ9Y2D4 811 aa16.12■□□□□ 0.17
GPC6-201ENST00000377047 ADGRF5Q8IZF2 1346 aa16.12■□□□□ 0.17
GPC6-201ENST00000377047 IFIT1P09914 478 aaKnown RBP16.12■□□□□ 0.17
GPC6-201ENST00000377047 POLR3DP05423 398 aaPredicted RBP16.12■□□□□ 0.17
GPC6-201ENST00000377047 CRACR2BQ8N4Y2 399 aaPredicted RBP16.12■□□□□ 0.17
GPC6-201ENST00000377047 TRMT112Q9UI30 125 aaKnown RBP16.12■□□□□ 0.17
GPC6-201ENST00000377047 NAIPQ13075 1403 aa16.11■□□□□ 0.17
GPC6-201ENST00000377047 SSBP05455 408 aaKnown RBP eCLIP16.11■□□□□ 0.17
GPC6-201ENST00000377047 MBD3O95983 291 aa16.11■□□□□ 0.17
GPC6-201ENST00000377047 PIP4K2AP48426 406 aaPredicted RBP16.11■□□□□ 0.17
GPC6-201ENST00000377047 IMMTQ16891 758 aaKnown RBP16.11■□□□□ 0.17
GPC6-201ENST00000377047 PDCL3Q9H2J4 239 aa16.11■□□□□ 0.17
GPC6-201ENST00000377047 RPAP2Q8IXW5 612 aaPredicted RBP16.11■□□□□ 0.17
GPC6-201ENST00000377047 AK7Q96M32 723 aa16.11■□□□□ 0.17
GPC6-201ENST00000377047 FANCAO15360 1455 aa16.11■□□□□ 0.17
GPC6-201ENST00000377047 NASPP49321 788 aaPredicted RBP16.11■□□□□ 0.17
GPC6-201ENST00000377047 TSPY26PQ9H489 355 aa16.11■□□□□ 0.17
GPC6-201ENST00000377047 LARP1BQ659C4 914 aaKnown RBP16.1■□□□□ 0.17
GPC6-201ENST00000377047 RDXP35241 583 aaKnown RBP16.1■□□□□ 0.17
GPC6-201ENST00000377047 NFKBIBQ15653 356 aa16.1■□□□□ 0.17
GPC6-201ENST00000377047 TANGO6Q9C0B7 1094 aa16.1■□□□□ 0.17
GPC6-201ENST00000377047 STIM1Q13586 685 aa16.1■□□□□ 0.17
GPC6-201ENST00000377047 ABCC5O15440 1437 aa16.1■□□□□ 0.17
GPC6-201ENST00000377047 FAM13BQ9NYF5 915 aa16.1■□□□□ 0.17
GPC6-201ENST00000377047 IBSPP21815 317 aaPredicted RBP16.09■□□□□ 0.17
GPC6-201ENST00000377047 DZIP1Q86YF9 867 aaKnown RBP16.09■□□□□ 0.17
GPC6-201ENST00000377047 IFIT5Q13325 482 aaKnown RBP16.09■□□□□ 0.17
GPC6-201ENST00000377047 MATR3P43243 847 aaKnown RBP eCLIP16.09■□□□□ 0.171e-6■■■■□ 23.2
GPC6-201ENST00000377047 CDR1P51861 262 aa16.09■□□□□ 0.17
GPC6-201ENST00000377047 MINDY4BA8MYZ0 360 aa16.09■□□□□ 0.17
GPC6-201ENST00000377047 HSP90AB3PQ58FF7 597 aa16.09■□□□□ 0.17
GPC6-201ENST00000377047 TRAK2O60296 914 aa16.08■□□□□ 0.17
GPC6-201ENST00000377047 KIF1BPQ96EK5 621 aa16.08■□□□□ 0.17
GPC6-201ENST00000377047 CCDC39Q9UFE4 941 aa16.08■□□□□ 0.17
GPC6-201ENST00000377047 WDR97A6NE52 1622 aa16.08■□□□□ 0.17
GPC6-201ENST00000377047 KRT32Q14532 448 aa16.08■□□□□ 0.16
GPC6-201ENST00000377047 NOS1P29475 1434 aa16.08■□□□□ 0.16
GPC6-201ENST00000377047 GPTP24298 496 aa16.08■□□□□ 0.16
GPC6-201ENST00000377047 MKNK2Q9HBH9 465 aa16.08■□□□□ 0.16
GPC6-201ENST00000377047 ZNF287Q9HBT7 754 aa16.08■□□□□ 0.16
GPC6-201ENST00000377047 SERPINC1P01008 464 aa16.07■□□□□ 0.16
GPC6-201ENST00000377047 SLFN5Q08AF3 891 aa16.07■□□□□ 0.16
GPC6-201ENST00000377047 ARGLU1Q9NWB6 273 aaPredicted RBP16.07■□□□□ 0.16
GPC6-201ENST00000377047 K7ELQ4 463 aaPredicted RBP16.07■□□□□ 0.16
GPC6-201ENST00000377047 TTLL12Q14166 644 aaPredicted RBP16.07■□□□□ 0.16
GPC6-201ENST00000377047 WDR33Q9C0J8 1336 aaKnown RBP16.07■□□□□ 0.16
GPC6-201ENST00000377047 HSP90AA2PQ14568 343 aaPredicted RBP16.07■□□□□ 0.16
GPC6-201ENST00000377047 SMARCA5O60264 1052 aaPredicted RBP16.06■□□□□ 0.16
GPC6-201ENST00000377047 CCDC184Q52MB2 194 aa16.06■□□□□ 0.16
GPC6-201ENST00000377047 DACH1Q9UI36 760 aa16.06■□□□□ 0.16
GPC6-201ENST00000377047 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.06■□□□□ 0.16
GPC6-201ENST00000377047 SLC5A1P13866 664 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms