RNA–Protein interactions for RNA: ENST00000361909.8

CMTM3-201, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMTM3, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-201ENST00000361909 KIF16BQ96L93 1317 aa23.69■■□□□ 1.38
CMTM3-201ENST00000361909 FBLN1P23142 703 aa23.68■■□□□ 1.38
CMTM3-201ENST00000361909 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.68■■□□□ 1.38
CMTM3-201ENST00000361909 ZSCAN30Q86W11 494 aa23.68■■□□□ 1.38
CMTM3-201ENST00000361909 CLEC17AQ6ZS10 378 aa23.68■■□□□ 1.38
CMTM3-201ENST00000361909 EMILIN1Q9Y6C2 1016 aa23.68■■□□□ 1.38
CMTM3-201ENST00000361909 MAP7D2Q96T17 732 aa23.67■■□□□ 1.38
CMTM3-201ENST00000361909 GOLGA6L22H0YM25 854 aa23.67■■□□□ 1.38
CMTM3-201ENST00000361909 HSP90AB1P08238 724 aaKnown RBP23.67■■□□□ 1.38
CMTM3-201ENST00000361909 HS1BP3Q53T59 392 aa23.67■■□□□ 1.38
CMTM3-201ENST00000361909 TNNQ9UQP3 1299 aa23.67■■□□□ 1.38
CMTM3-201ENST00000361909 C1orf167Q5SNV9 1468 aa23.66■■□□□ 1.38
CMTM3-201ENST00000361909 KIF1AQ12756 1690 aa23.65■■□□□ 1.38
CMTM3-201ENST00000361909 U2SURPO15042 1029 aaKnown RBP23.65■■□□□ 1.38
CMTM3-201ENST00000361909 OFD1O75665 1012 aa23.65■■□□□ 1.38
CMTM3-201ENST00000361909 ATF3P18847 181 aa23.65■■□□□ 1.38
CMTM3-201ENST00000361909 RRS1Q15050 365 aaKnown RBP23.64■■□□□ 1.38
CMTM3-201ENST00000361909 PSME1Q06323 249 aa23.64■■□□□ 1.37
CMTM3-201ENST00000361909 GAS2L3Q86XJ1 694 aa23.64■■□□□ 1.37
CMTM3-201ENST00000361909 FCHSD2O94868 740 aa23.63■■□□□ 1.37
CMTM3-201ENST00000361909 IL13P35225 146 aa23.63■■□□□ 1.37
CMTM3-201ENST00000361909 PLEKHF1Q96S99 279 aa23.63■■□□□ 1.37
CMTM3-201ENST00000361909 NLRP6P59044 892 aa23.62■■□□□ 1.37
CMTM3-201ENST00000361909 KIAA1211Q6ZU35 1233 aa23.62■■□□□ 1.37
CMTM3-201ENST00000361909 CADPS2Q86UW7 1296 aa23.62■■□□□ 1.37
CMTM3-201ENST00000361909 CALD1Q05682 793 aaKnown RBP23.62■■□□□ 1.37
CMTM3-201ENST00000361909 ABTB2Q8N961 1025 aa23.62■■□□□ 1.37
CMTM3-201ENST00000361909 ORAI2Q96SN7 254 aa23.62■■□□□ 1.37
CMTM3-201ENST00000361909 BCL2L13Q9BXK5 485 aa23.62■■□□□ 1.37
CMTM3-201ENST00000361909 MST1RQ04912 1400 aa23.61■■□□□ 1.37
CMTM3-201ENST00000361909 NASPP49321 788 aaPredicted RBP23.61■■□□□ 1.37
CMTM3-201ENST00000361909 MARF1Q9Y4F3 1742 aaKnown RBP23.61■■□□□ 1.37
CMTM3-201ENST00000361909 KLHL40Q2TBA0 621 aa23.61■■□□□ 1.37
CMTM3-201ENST00000361909 MSH6P52701 1360 aa23.6■■□□□ 1.37
CMTM3-201ENST00000361909 NEUROD2Q15784 382 aa23.6■■□□□ 1.37
CMTM3-201ENST00000361909 RRP7AQ9Y3A4 280 aaKnown RBP23.6■■□□□ 1.37
CMTM3-201ENST00000361909 KIF24Q5T7B8 1368 aa23.6■■□□□ 1.37
CMTM3-201ENST00000361909 MSNP26038 577 aaKnown RBP23.59■■□□□ 1.37
CMTM3-201ENST00000361909 XIRP1Q702N8 1843 aaKnown RBP23.59■■□□□ 1.37
CMTM3-201ENST00000361909 NUCB1Q02818 461 aa23.59■■□□□ 1.37
CMTM3-201ENST00000361909 BMP2KLQ5H9B9 411 aa23.59■■□□□ 1.37
CMTM3-201ENST00000361909 ATF7IPQ6VMQ6 1270 aa23.58■■□□□ 1.36
CMTM3-201ENST00000361909 IL16Q14005 1332 aa23.57■■□□□ 1.36
CMTM3-201ENST00000361909 K7ELQ4 463 aaPredicted RBP23.57■■□□□ 1.36
CMTM3-201ENST00000361909 SMC4Q9NTJ3 1288 aa23.57■■□□□ 1.36
CMTM3-201ENST00000361909 SBNO1A3KN83 1393 aa23.57■■□□□ 1.36
CMTM3-201ENST00000361909 FOXO3O43524 673 aa23.57■■□□□ 1.36
CMTM3-201ENST00000361909 TRIM27P14373 513 aa23.57■■□□□ 1.36
CMTM3-201ENST00000361909 PEAK1Q9H792 1746 aa23.56■■□□□ 1.36
CMTM3-201ENST00000361909 MAP3K19Q56UN5 1328 aa23.56■■□□□ 1.36
CMTM3-201ENST00000361909 MTERF4Q7Z6M4 381 aaKnown RBP23.55■■□□□ 1.36
CMTM3-201ENST00000361909 ZNF445P59923 1031 aa23.55■■□□□ 1.36
CMTM3-201ENST00000361909 FLT4P35916 1363 aa23.55■■□□□ 1.36
CMTM3-201ENST00000361909 ITPRIPQ8IWB1 547 aa23.54■■□□□ 1.36
CMTM3-201ENST00000361909 TRPM3Q9HCF6 1732 aaPredicted RBP23.54■■□□□ 1.36
CMTM3-201ENST00000361909 CFAP44Q96MT7 982 aa23.54■■□□□ 1.36
CMTM3-201ENST00000361909 ZBTB40Q9NUA8 1239 aa23.54■■□□□ 1.36
CMTM3-201ENST00000361909 ZNF335Q9H4Z2 1342 aaPredicted RBP23.53■■□□□ 1.36
CMTM3-201ENST00000361909 IPO8O15397 1037 aaKnown RBP23.53■■□□□ 1.36
CMTM3-201ENST00000361909 CHMP4BQ9H444 224 aaKnown RBP23.53■■□□□ 1.36
CMTM3-201ENST00000361909 TMPOP42166 694 aaKnown RBP23.52■■□□□ 1.36
CMTM3-201ENST00000361909 EIF4A2Q14240 407 aaKnown RBP23.52■■□□□ 1.36
CMTM3-201ENST00000361909 KRT28Q7Z3Y7 464 aa23.52■■□□□ 1.36
CMTM3-201ENST00000361909 KCNH5Q8NCM2 988 aa23.51■■□□□ 1.35
CMTM3-201ENST00000361909 ZNF500O60304 480 aaPredicted RBP23.51■■□□□ 1.35
CMTM3-201ENST00000361909 CHD1LQ86WJ1 897 aa23.51■■□□□ 1.35
CMTM3-201ENST00000361909 HSP90AB2PQ58FF8 381 aa23.5■■□□□ 1.35
CMTM3-201ENST00000361909 NUTM2GQ5VZR2 741 aa23.5■■□□□ 1.35
CMTM3-201ENST00000361909 KIF2CQ99661 725 aa23.5■■□□□ 1.35
CMTM3-201ENST00000361909 PRKAR2BP31323 418 aa23.5■■□□□ 1.35
CMTM3-201ENST00000361909 MCM5P33992 734 aa23.5■■□□□ 1.35
CMTM3-201ENST00000361909 AMPHP49418 695 aa23.5■■□□□ 1.35
CMTM3-201ENST00000361909 SOX12O15370 315 aa23.49■■□□□ 1.35
CMTM3-201ENST00000361909 RGPD1P0DJD0 1748 aa23.49■■□□□ 1.35
CMTM3-201ENST00000361909 RTL1A6NKG5 1358 aa23.49■■□□□ 1.35
CMTM3-201ENST00000361909 DDX49Q9Y6V7 483 aaKnown RBP23.48■■□□□ 1.35
CMTM3-201ENST00000361909 GCC1Q96CN9 775 aa23.48■■□□□ 1.35
CMTM3-201ENST00000361909 NOL7Q9UMY1 257 aaKnown RBP23.48■■□□□ 1.35
CMTM3-201ENST00000361909 CSPP1Q1MSJ5 1256 aa23.47■■□□□ 1.35
CMTM3-201ENST00000361909 SSH1Q8WYL5 1049 aa23.47■■□□□ 1.35
CMTM3-201ENST00000361909 NPHP3Q7Z494 1330 aa23.47■■□□□ 1.35
CMTM3-201ENST00000361909 NFAT5O94916 1531 aa23.47■■□□□ 1.35
CMTM3-201ENST00000361909 HMOX1P09601 288 aa23.47■■□□□ 1.35
CMTM3-201ENST00000361909 NUCB2P80303 420 aa23.47■■□□□ 1.35
CMTM3-201ENST00000361909 ALDH1L2Q3SY69 923 aa23.47■■□□□ 1.35
CMTM3-201ENST00000361909 ZNF428Q96B54 188 aa23.47■■□□□ 1.35
CMTM3-201ENST00000361909 SLIT3O75094 1523 aa23.46■■□□□ 1.35
CMTM3-201ENST00000361909 BAG4O95429 457 aaKnown RBP23.46■■□□□ 1.35
CMTM3-201ENST00000361909 PDLIM2Q96JY6 352 aa23.46■■□□□ 1.35
CMTM3-201ENST00000361909 EXOSC9Q06265 439 aaKnown RBP23.45■■□□□ 1.35
CMTM3-201ENST00000361909 ALS2Q96Q42 1657 aa23.45■■□□□ 1.35
CMTM3-201ENST00000361909 PHRF1Q9P1Y6 1649 aaKnown RBP23.45■■□□□ 1.34
CMTM3-201ENST00000361909 HOXC9P31274 260 aa23.45■■□□□ 1.34
CMTM3-201ENST00000361909 TMEM57Q8N5G2 664 aa23.45■■□□□ 1.34
CMTM3-201ENST00000361909 ARHGEF10O15013 1369 aa23.44■■□□□ 1.34
CMTM3-201ENST00000361909 RIPK4P57078 832 aa23.44■■□□□ 1.34
CMTM3-201ENST00000361909 TRIM35Q9UPQ4 493 aa23.44■■□□□ 1.34
CMTM3-201ENST00000361909 BRPF1P55201 1214 aaPredicted RBP23.44■■□□□ 1.34
CMTM3-201ENST00000361909 XPCQ01831 940 aaPredicted RBP23.44■■□□□ 1.34
CMTM3-201ENST00000361909 LTN1O94822 1766 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms