RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NLRP6P59044 892 aa26.16■■□□□ 1.78
CCDC88B-203ENST00000359902 INTS3Q68E01 1043 aaKnown RBP26.16■■□□□ 1.78
CCDC88B-203ENST00000359902 C22orf23Q9BZE7 217 aa26.16■■□□□ 1.78
CCDC88B-203ENST00000359902 IGSF1Q8N6C5 1336 aa26.15■■□□□ 1.78
CCDC88B-203ENST00000359902 TBC1D2Q9BYX2 928 aa26.14■■□□□ 1.78
CCDC88B-203ENST00000359902 RGS12O14924 1447 aa26.14■■□□□ 1.77
CCDC88B-203ENST00000359902 CEP170BQ9Y4F5 1589 aaPredicted RBP26.13■■□□□ 1.77
CCDC88B-203ENST00000359902 BMP2KLQ5H9B9 411 aa26.12■■□□□ 1.77
CCDC88B-203ENST00000359902 RTF1Q92541 710 aaKnown RBP26.12■■□□□ 1.77
CCDC88B-203ENST00000359902 MIS18AQ9NYP9 233 aa26.12■■□□□ 1.77
CCDC88B-203ENST00000359902 FRAT2O75474 233 aaPredicted RBP26.11■■□□□ 1.77
CCDC88B-203ENST00000359902 TRHP20396 242 aaPredicted RBP26.1■■□□□ 1.77
CCDC88B-203ENST00000359902 NUTM2GQ5VZR2 741 aa26.1■■□□□ 1.77
CCDC88B-203ENST00000359902 PTPRCP08575 1304 aa26.09■■□□□ 1.77
CCDC88B-203ENST00000359902 GAS2L2Q8NHY3 880 aa26.09■■□□□ 1.77
CCDC88B-203ENST00000359902 ANTXR1Q9H6X2 564 aa26.09■■□□□ 1.77
CCDC88B-203ENST00000359902 HOXC9P31274 260 aa26.08■■□□□ 1.77
CCDC88B-203ENST00000359902 MARF1Q9Y4F3 1742 aaKnown RBP26.08■■□□□ 1.77
CCDC88B-203ENST00000359902 SLKQ9H2G2 1235 aaPredicted RBP26.08■■□□□ 1.76
CCDC88B-203ENST00000359902 TSPYL4Q9UJ04 414 aa26.08■■□□□ 1.76
CCDC88B-203ENST00000359902 ABTB2Q8N961 1025 aa26.07■■□□□ 1.76
CCDC88B-203ENST00000359902 SLC4A2P04920 1241 aa26.06■■□□□ 1.76
CCDC88B-203ENST00000359902 DCTPP1Q9H773 170 aa26.06■■□□□ 1.76
CCDC88B-203ENST00000359902 HTATSF1O43719 755 aaKnown RBP26.05■■□□□ 1.76
CCDC88B-203ENST00000359902 USP54Q70EL1 1684 aa26.05■■□□□ 1.76
CCDC88B-203ENST00000359902 ANKLE2Q86XL3 938 aa26.04■■□□□ 1.76
CCDC88B-203ENST00000359902 ANKRD44Q8N8A2 993 aa26.04■■□□□ 1.76
CCDC88B-203ENST00000359902 ATP10DQ9P241 1426 aa26.03■■□□□ 1.76
CCDC88B-203ENST00000359902 RBM25P49756 843 aaKnown RBP26.03■■□□□ 1.76
CCDC88B-203ENST00000359902 GSE1Q14687 1217 aa26.03■■□□□ 1.76
CCDC88B-203ENST00000359902 NWD1Q149M9 1564 aa26.02■■□□□ 1.76
CCDC88B-203ENST00000359902 RPAP2Q8IXW5 612 aaPredicted RBP26.02■■□□□ 1.76
CCDC88B-203ENST00000359902 PHF8Q9UPP1 1060 aa26.02■■□□□ 1.76
CCDC88B-203ENST00000359902 MSH6P52701 1360 aa26.02■■□□□ 1.76
CCDC88B-203ENST00000359902 CHD2O14647 1828 aaKnown RBP26.01■■□□□ 1.75
CCDC88B-203ENST00000359902 GNAT3A8MTJ3 354 aa26■■□□□ 1.75
CCDC88B-203ENST00000359902 RTL1A6NKG5 1358 aa26■■□□□ 1.75
CCDC88B-203ENST00000359902 CEP85Q6P2H3 762 aa26■■□□□ 1.75
CCDC88B-203ENST00000359902 G2E3Q7L622 706 aa26■■□□□ 1.75
CCDC88B-203ENST00000359902 MEIS3Q99687 375 aa25.99■■□□□ 1.75
CCDC88B-203ENST00000359902 PLEKHM2Q8IWE5 1019 aa25.98■■□□□ 1.75
CCDC88B-203ENST00000359902 RBM33Q96EV2 1170 aaKnown RBP25.98■■□□□ 1.75
CCDC88B-203ENST00000359902 LTV1Q96GA3 475 aaPredicted RBP25.98■■□□□ 1.75
CCDC88B-203ENST00000359902 TBC1D9Q6ZT07 1266 aa25.97■■□□□ 1.75
CCDC88B-203ENST00000359902 LRRC37A3O60309 1634 aa25.97■■□□□ 1.75
CCDC88B-203ENST00000359902 C14orf37Q86TY3 774 aa25.97■■□□□ 1.75
CCDC88B-203ENST00000359902 IL17REQ8NFR9 667 aa25.96■■□□□ 1.75
CCDC88B-203ENST00000359902 MAP3K5Q99683 1374 aa25.94■■□□□ 1.74
CCDC88B-203ENST00000359902 F6X3S4 739 aa25.94■■□□□ 1.74
CCDC88B-203ENST00000359902 SPRYD3Q8NCJ5 442 aa25.94■■□□□ 1.74
CCDC88B-203ENST00000359902 GSPT1P15170 499 aaKnown RBP25.93■■□□□ 1.74
CCDC88B-203ENST00000359902 CCT4P50991 539 aaKnown RBP25.93■■□□□ 1.74
CCDC88B-203ENST00000359902 C16orf71Q8IYS4 520 aaPredicted RBP25.93■■□□□ 1.74
CCDC88B-203ENST00000359902 SLC4A10Q6U841 1118 aa25.92■■□□□ 1.74
CCDC88B-203ENST00000359902 ZNF142P52746 1687 aaPredicted RBP25.92■■□□□ 1.74
CCDC88B-203ENST00000359902 IP6K1Q92551 441 aa25.92■■□□□ 1.74
CCDC88B-203ENST00000359902 STK31Q9BXU1 1019 aa25.92■■□□□ 1.74
CCDC88B-203ENST00000359902 HSCBQ8IWL3 235 aa25.91■■□□□ 1.74
CCDC88B-203ENST00000359902 CDC45O75419 566 aa25.91■■□□□ 1.74
CCDC88B-203ENST00000359902 USHBP1Q8N6Y0 703 aa25.91■■□□□ 1.74
CCDC88B-203ENST00000359902 SNX21Q969T3 373 aa25.91■■□□□ 1.74
CCDC88B-203ENST00000359902 TAF7Q15545 349 aaPredicted RBP25.9■■□□□ 1.74
CCDC88B-203ENST00000359902 CCDC30Q5VVM6 783 aa25.9■■□□□ 1.74
CCDC88B-203ENST00000359902 KIF2CQ99661 725 aa25.9■■□□□ 1.74
CCDC88B-203ENST00000359902 BABAM1Q9NWV8 329 aa25.9■■□□□ 1.74
CCDC88B-203ENST00000359902 ESCO1Q5FWF5 840 aa25.89■■□□□ 1.74
CCDC88B-203ENST00000359902 TTC22Q5TAA0 569 aa25.89■■□□□ 1.74
CCDC88B-203ENST00000359902 ADGRL3Q9HAR2 1447 aa25.89■■□□□ 1.74
CCDC88B-203ENST00000359902 PSME1Q06323 249 aa25.89■■□□□ 1.74
CCDC88B-203ENST00000359902 LTN1O94822 1766 aa25.89■■□□□ 1.73
CCDC88B-203ENST00000359902 NFAT5O94916 1531 aa25.88■■□□□ 1.73
CCDC88B-203ENST00000359902 FLIIQ13045 1269 aa25.87■■□□□ 1.73
CCDC88B-203ENST00000359902 OTUD7AQ8TE49 926 aaPredicted RBP25.87■■□□□ 1.73
CCDC88B-203ENST00000359902 SOS1Q07889 1333 aaPredicted RBP25.87■■□□□ 1.73
CCDC88B-203ENST00000359902 SMARCA5O60264 1052 aaPredicted RBP25.86■■□□□ 1.73
CCDC88B-203ENST00000359902 HMMRO75330 724 aa25.86■■□□□ 1.73
CCDC88B-203ENST00000359902 NBPF6Q5VWK0 638 aa25.86■■□□□ 1.73
CCDC88B-203ENST00000359902 NBPF4Q96M43 638 aa25.86■■□□□ 1.73
CCDC88B-203ENST00000359902 CHMP5Q9NZZ3 219 aa25.86■■□□□ 1.73
CCDC88B-203ENST00000359902 NECTIN2Q92692 538 aa25.85■■□□□ 1.73
CCDC88B-203ENST00000359902 FKBP5Q13451 457 aaPredicted RBP25.84■■□□□ 1.73
CCDC88B-203ENST00000359902 FAM208AQ9UK61 1670 aaKnown RBP25.84■■□□□ 1.73
CCDC88B-203ENST00000359902 APBB1O00213 710 aa25.83■■□□□ 1.73
CCDC88B-203ENST00000359902 KCNH5Q8NCM2 988 aa25.83■■□□□ 1.73
CCDC88B-203ENST00000359902 GNAI2P04899 355 aa25.83■■□□□ 1.73
CCDC88B-203ENST00000359902 NCOA3Q9Y6Q9 1424 aa25.83■■□□□ 1.73
CCDC88B-203ENST00000359902 ADAMTSL3P82987 1691 aa25.82■■□□□ 1.72
CCDC88B-203ENST00000359902 SETD1BQ9UPS6 1966 aaKnown RBP25.82■■□□□ 1.72
CCDC88B-203ENST00000359902 CEMIPQ8WUJ3 1361 aa25.81■■□□□ 1.72
CCDC88B-203ENST00000359902 NPHP4O75161 1426 aaPredicted RBP25.8■■□□□ 1.72
CCDC88B-203ENST00000359902 EIF5BO60841 1220 aaKnown RBP25.8■■□□□ 1.72
CCDC88B-203ENST00000359902 CACNA1FO60840 1977 aa25.8■■□□□ 1.72
CCDC88B-203ENST00000359902 DDIT3P35638 169 aa25.8■■□□□ 1.72
CCDC88B-203ENST00000359902 GNAI3P08754 354 aa25.79■■□□□ 1.72
CCDC88B-203ENST00000359902 SDSP20132 328 aa25.79■■□□□ 1.72
CCDC88B-203ENST00000359902 ORAI2Q96SN7 254 aa25.79■■□□□ 1.72
CCDC88B-203ENST00000359902 ZBTB7CA1YPR0 619 aa25.78■■□□□ 1.72
CCDC88B-203ENST00000359902 LGR6Q9HBX8 967 aa25.77■■□□□ 1.72
CCDC88B-203ENST00000359902 CD2BP2O95400 341 aaKnown RBP25.76■■□□□ 1.71
CCDC88B-203ENST00000359902 MCM4P33991 863 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms