RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 BAG6P46379 1132 aa22.99■■□□□ 1.27
CLN3-203ENST00000357806 EYA1Q99502 592 aa22.99■■□□□ 1.27
CLN3-203ENST00000357806 BTAF1O14981 1849 aa22.99■■□□□ 1.27
CLN3-203ENST00000357806 MTHFSP49914 203 aa22.98■■□□□ 1.27
CLN3-203ENST00000357806 IGSF1Q8N6C5 1336 aa22.97■■□□□ 1.27
CLN3-203ENST00000357806 ZCRB1Q8TBF4 217 aaKnown RBP22.97■■□□□ 1.27
CLN3-203ENST00000357806 DEFB132Q7Z7B7 95 aa22.96■■□□□ 1.27
CLN3-203ENST00000357806 PLEKHG2Q9H7P9 1386 aa22.95■■□□□ 1.26
CLN3-203ENST00000357806 COL3A1P02461 1466 aaPredicted RBP22.95■■□□□ 1.26
CLN3-203ENST00000357806 NUP188Q5SRE5 1749 aa22.94■■□□□ 1.26
CLN3-203ENST00000357806 DDX54Q8TDD1 881 aaKnown RBP22.94■■□□□ 1.26
CLN3-203ENST00000357806 ITGB4P16144 1822 aa22.94■■□□□ 1.26
CLN3-203ENST00000357806 DDX10Q13206 875 aaKnown RBP22.93■■□□□ 1.26
CLN3-203ENST00000357806 PCDH11XQ9BZA7 1347 aa22.93■■□□□ 1.26
CLN3-203ENST00000357806 PCDH11YQ9BZA8 1340 aa22.93■■□□□ 1.26
CLN3-203ENST00000357806 VIRMAQ69YN4 1812 aaKnown RBP22.93■■□□□ 1.26
CLN3-203ENST00000357806 TOGARAM1Q9Y4F4 1720 aa22.92■■□□□ 1.26
CLN3-203ENST00000357806 APBA3O96018 575 aa22.92■■□□□ 1.26
CLN3-203ENST00000357806 IL13P35225 146 aa22.92■■□□□ 1.26
CLN3-203ENST00000357806 BCL11BQ9C0K0 894 aaPredicted RBP22.92■■□□□ 1.26
CLN3-203ENST00000357806 PARD3Q8TEW0 1356 aa22.91■■□□□ 1.26
CLN3-203ENST00000357806 EN1Q05925 392 aaPredicted RBP22.9■■□□□ 1.26
CLN3-203ENST00000357806 KDRP35968 1356 aa22.89■■□□□ 1.26
CLN3-203ENST00000357806 DIAPH1O60610 1272 aaKnown RBP22.89■■□□□ 1.25
CLN3-203ENST00000357806 SPG7Q9UQ90 795 aa22.88■■□□□ 1.25
CLN3-203ENST00000357806 PPP2R1AP30153 589 aa22.87■■□□□ 1.25
CLN3-203ENST00000357806 ACSBG1Q96GR2 724 aa22.87■■□□□ 1.25
CLN3-203ENST00000357806 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.87■■□□□ 1.25
CLN3-203ENST00000357806 CFAP53Q96M91 514 aa22.86■■□□□ 1.25
CLN3-203ENST00000357806 SULT6B1Q6IMI4 303 aa22.85■■□□□ 1.25
CLN3-203ENST00000357806 LY75O60449 1722 aa22.85■■□□□ 1.25
CLN3-203ENST00000357806 KCNQ2O43526 872 aa22.85■■□□□ 1.25
CLN3-203ENST00000357806 EZH2Q15910 746 aaKnown RBP22.85■■□□□ 1.25
CLN3-203ENST00000357806 PTF1AQ7RTS3 328 aa22.85■■□□□ 1.25
CLN3-203ENST00000357806 AEBP1Q8IUX7 1158 aa22.85■■□□□ 1.25
CLN3-203ENST00000357806 CAMKK2Q96RR4 588 aa22.85■■□□□ 1.25
CLN3-203ENST00000357806 PLSCR1O15162 318 aa22.83■■□□□ 1.25
CLN3-203ENST00000357806 CYP27B1O15528 508 aa22.83■■□□□ 1.25
CLN3-203ENST00000357806 SCN11AQ9UI33 1791 aa22.82■■□□□ 1.24
CLN3-203ENST00000357806 ZNF316A6NFI3 1004 aaPredicted RBP22.81■■□□□ 1.24
CLN3-203ENST00000357806 RALBP1Q15311 655 aa22.8■■□□□ 1.24
CLN3-203ENST00000357806 AMOTQ4VCS5 1084 aa22.8■■□□□ 1.24
CLN3-203ENST00000357806 SYTL4Q96C24 671 aaPredicted RBP22.8■■□□□ 1.24
CLN3-203ENST00000357806 PLEKHO1Q53GL0 409 aaPredicted RBP22.79■■□□□ 1.24
CLN3-203ENST00000357806 IFNL2Q8IZJ0 200 aa22.79■■□□□ 1.24
CLN3-203ENST00000357806 U2SURPO15042 1029 aaKnown RBP22.79■■□□□ 1.24
CLN3-203ENST00000357806 HMOX1P09601 288 aa22.79■■□□□ 1.24
CLN3-203ENST00000357806 PHKG2P15735 406 aa22.78■■□□□ 1.24
CLN3-203ENST00000357806 PRIM1P49642 420 aaKnown RBP22.78■■□□□ 1.24
CLN3-203ENST00000357806 NKX1-1Q15270 411 aaPredicted RBP22.77■■□□□ 1.24
CLN3-203ENST00000357806 NUDCQ9Y266 331 aa22.77■■□□□ 1.24
CLN3-203ENST00000357806 ZNF530Q6P9A1 599 aaPredicted RBP22.75■■□□□ 1.23
CLN3-203ENST00000357806 PAPPAQ13219 1627 aa22.74■■□□□ 1.23
CLN3-203ENST00000357806 TAF1LQ8IZX4 1826 aa22.74■■□□□ 1.23
CLN3-203ENST00000357806 HSP90AB1P08238 724 aaKnown RBP22.73■■□□□ 1.23
CLN3-203ENST00000357806 C1orf141Q5JVX7 400 aa22.73■■□□□ 1.23
CLN3-203ENST00000357806 C5P01031 1676 aa22.73■■□□□ 1.23
CLN3-203ENST00000357806 ADAMTS7Q9UKP4 1686 aa22.73■■□□□ 1.23
CLN3-203ENST00000357806 MYBBP1AQ9BQG0 1328 aaKnown RBP22.72■■□□□ 1.23
CLN3-203ENST00000357806 TXNRD1Q16881 649 aa22.72■■□□□ 1.23
CLN3-203ENST00000357806 KDM6AO15550 1401 aaPredicted RBP22.71■■□□□ 1.23
CLN3-203ENST00000357806 DLG5Q8TDM6 1919 aa22.7■■□□□ 1.22
CLN3-203ENST00000357806 QSER1Q2KHR3 1735 aa22.7■■□□□ 1.22
CLN3-203ENST00000357806 MPRIPQ6WCQ1 1025 aa22.7■■□□□ 1.22
CLN3-203ENST00000357806 DCAF5Q96JK2 942 aa22.7■■□□□ 1.22
CLN3-203ENST00000357806 U2AF1L5P0DN76 240 aaPredicted RBP22.69■■□□□ 1.22
CLN3-203ENST00000357806 U2AF1Q01081 240 aaKnown RBP eCLIP22.69■■□□□ 1.22
CLN3-203ENST00000357806 NBPF14Q5TI25 921 aa22.69■■□□□ 1.22
CLN3-203ENST00000357806 PROM2Q8N271 834 aa22.69■■□□□ 1.22
CLN3-203ENST00000357806 TUBGCP6Q96RT7 1819 aa22.68■■□□□ 1.22
CLN3-203ENST00000357806 AKAP4Q5JQC9 854 aa22.67■■□□□ 1.22
CLN3-203ENST00000357806 RSPH6AQ9H0K4 717 aa22.67■■□□□ 1.22
CLN3-203ENST00000357806 PRKRIP1Q9H875 184 aaPredicted RBP22.67■■□□□ 1.22
CLN3-203ENST00000357806 TMOD3Q9NYL9 352 aa22.67■■□□□ 1.22
CLN3-203ENST00000357806 SIPA1L3O60292 1781 aaPredicted RBP22.66■■□□□ 1.22
CLN3-203ENST00000357806 ERVV-2B6SEH9 535 aa22.66■■□□□ 1.22
CLN3-203ENST00000357806 PRKAR2BP31323 418 aa22.66■■□□□ 1.22
CLN3-203ENST00000357806 MTHFSDQ2M296 383 aaKnown RBP22.66■■□□□ 1.22
CLN3-203ENST00000357806 SLC27A3Q5K4L6 730 aa22.66■■□□□ 1.22
CLN3-203ENST00000357806 ZNF831Q5JPB2 1677 aa22.65■■□□□ 1.22
CLN3-203ENST00000357806 PALLDQ8WX93 1383 aa22.65■■□□□ 1.22
CLN3-203ENST00000357806 CASZ1Q86V15 1759 aa22.65■■□□□ 1.22
CLN3-203ENST00000357806 MRC1P22897 1456 aa22.65■■□□□ 1.22
CLN3-203ENST00000357806 PSDA5PKW4 1024 aaPredicted RBP22.65■■□□□ 1.22
CLN3-203ENST00000357806 R3HDM1Q15032 1099 aaKnown RBP22.65■■□□□ 1.22
CLN3-203ENST00000357806 PIGBQ92521 554 aa22.65■■□□□ 1.22
CLN3-203ENST00000357806 GAS2L2Q8NHY3 880 aa22.64■■□□□ 1.21
CLN3-203ENST00000357806 FCHSD2O94868 740 aa22.63■■□□□ 1.21
CLN3-203ENST00000357806 SMARCC1Q92922 1105 aaPredicted RBP22.63■■□□□ 1.21
CLN3-203ENST00000357806 ANO8Q9HCE9 1232 aaPredicted RBP22.62■■□□□ 1.21
CLN3-203ENST00000357806 LRP5O75197 1615 aa22.62■■□□□ 1.21
CLN3-203ENST00000357806 CABP4P57796 275 aa22.61■■□□□ 1.21
CLN3-203ENST00000357806 LRRC4BQ9NT99 713 aa22.61■■□□□ 1.21
CLN3-203ENST00000357806 MAP3K5Q99683 1374 aa22.61■■□□□ 1.21
CLN3-203ENST00000357806 CCNL1Q9UK58 526 aaPredicted RBP22.6■■□□□ 1.21
CLN3-203ENST00000357806 C4BP0C0L5 1744 aa22.6■■□□□ 1.21
CLN3-203ENST00000357806 COL5A3P25940 1745 aaPredicted RBP22.6■■□□□ 1.21
CLN3-203ENST00000357806 STK32BQ9NY57 414 aa22.6■■□□□ 1.21
CLN3-203ENST00000357806 UBR2Q8IWV8 1755 aa22.59■■□□□ 1.21
CLN3-203ENST00000357806 CICQ96RK0 1608 aaPredicted RBP22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms