RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 KIF18AQ8NI77 898 aa23.06■■□□□ 1.28
CCDC88B-202ENST00000356786 KIF2AO00139 706 aaPredicted RBP23.06■■□□□ 1.28
CCDC88B-202ENST00000356786 DYNC1I1O14576 645 aa23.06■■□□□ 1.28
CCDC88B-202ENST00000356786 DEF6Q9H4E7 631 aa23.06■■□□□ 1.28
CCDC88B-202ENST00000356786 PIP4K2AP48426 406 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 SART3Q15020 963 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 ZNHIT6Q9NWK9 470 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 BAG4O95429 457 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 TMPOP42166 694 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 EXOC6BQ9Y2D4 811 aa23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 CT47A1Q5JQC4 288 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 LRPPRCP42704 1394 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 EPS15P42566 896 aa23.05■■□□□ 1.28
CCDC88B-202ENST00000356786 PPP4R3BQ5MIZ7 849 aa23.04■■□□□ 1.28
CCDC88B-202ENST00000356786 SFPQP23246 707 aaKnown RBP eCLIP23.04■■□□□ 1.28
CCDC88B-202ENST00000356786 KLHL40Q2TBA0 621 aa23.04■■□□□ 1.28
CCDC88B-202ENST00000356786 MAGEC2Q9UBF1 373 aaPredicted RBP23.04■■□□□ 1.28
CCDC88B-202ENST00000356786 C16orf45Q96MC5 204 aaPredicted RBP23.04■■□□□ 1.28
CCDC88B-202ENST00000356786 TNNT1P13805 278 aa23.03■■□□□ 1.28
CCDC88B-202ENST00000356786 NLRP6P59044 892 aa23.03■■□□□ 1.28
CCDC88B-202ENST00000356786 TRERF1Q96PN7 1200 aa23.03■■□□□ 1.28
CCDC88B-202ENST00000356786 IGHDP01880 384 aa23.03■■□□□ 1.28
CCDC88B-202ENST00000356786 SRGAP3O43295 1099 aa23.03■■□□□ 1.28
CCDC88B-202ENST00000356786 PDIA4P13667 645 aaKnown RBP23.03■■□□□ 1.28
CCDC88B-202ENST00000356786 CASTP20810 708 aaKnown RBP23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 NUTM2GQ5VZR2 741 aa23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 STK11IPQ8N1F8 1099 aa23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 NKTRP30414 1462 aaKnown RBP23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 USP8P40818 1118 aa23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 CCDC83Q8IWF9 413 aa23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 RAPGEF4Q8WZA2 1011 aa23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 GDPD2Q9HCC8 539 aa23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 DACH1Q9UI36 760 aa23.02■■□□□ 1.28
CCDC88B-202ENST00000356786 CFAP100Q494V2 611 aa23.01■■□□□ 1.27
CCDC88B-202ENST00000356786 FAM193AP78312 1265 aa23.01■■□□□ 1.27
CCDC88B-202ENST00000356786 PSME1Q06323 249 aa23.01■■□□□ 1.27
CCDC88B-202ENST00000356786 SPDYE4A6NLX3 237 aa23.01■■□□□ 1.27
CCDC88B-202ENST00000356786 SIL1Q9H173 461 aa23.01■■□□□ 1.27
CCDC88B-202ENST00000356786 CALCOCO1Q9P1Z2 691 aa23.01■■□□□ 1.27
CCDC88B-202ENST00000356786 GOLGA6L10A6NI86 522 aa23■■□□□ 1.27
CCDC88B-202ENST00000356786 FYB1O15117 783 aa23■■□□□ 1.27
CCDC88B-202ENST00000356786 TXLNAP40222 546 aa23■■□□□ 1.27
CCDC88B-202ENST00000356786 DDX11Q96FC9 970 aa23■■□□□ 1.27
CCDC88B-202ENST00000356786 MYO6Q9UM54 1294 aa23■■□□□ 1.27
CCDC88B-202ENST00000356786 SMARCA5O60264 1052 aaPredicted RBP22.99■■□□□ 1.27
CCDC88B-202ENST00000356786 SMTNL1A8MU46 457 aa22.99■■□□□ 1.27
CCDC88B-202ENST00000356786 URI1O94763 535 aaPredicted RBP22.99■■□□□ 1.27
CCDC88B-202ENST00000356786 ADCY5O95622 1261 aa22.99■■□□□ 1.27
CCDC88B-202ENST00000356786 CCDC181Q5TID7 509 aa22.99■■□□□ 1.27
CCDC88B-202ENST00000356786 TBC1D2BQ9UPU7 963 aa22.99■■□□□ 1.27
CCDC88B-202ENST00000356786 PRAM1Q96QH2 718 aa22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 RBM27Q9P2N5 1060 aaKnown RBP22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 PTPRKQ15262 1439 aa22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 HSP90AB2PQ58FF8 381 aa22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 SCAND2PQ9GZW5 306 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 CLIP2Q9UDT6 1046 aa22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 FCHSD2O94868 740 aa22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 PLCD4Q9BRC7 762 aa22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 MTMR7Q9Y216 660 aa22.98■■□□□ 1.27
CCDC88B-202ENST00000356786 ARHGAP29Q52LW3 1261 aa22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 AACSQ86V21 672 aa22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 CABP1Q9NZU7 370 aa22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 GPATCH8Q9UKJ3 1502 aaKnown RBP22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 POLR3GO15318 223 aaPredicted RBP22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 THUMPD2Q9BTF0 503 aaKnown RBP22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 TRMT1Q9NXH9 659 aaKnown RBP22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 CKAP2LQ8IYA6 745 aa22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 SLC52A1Q9NWF4 448 aa22.97■■□□□ 1.27
CCDC88B-202ENST00000356786 PRIMPOLQ96LW4 560 aa22.96■■□□□ 1.27
CCDC88B-202ENST00000356786 CENPHQ9H3R5 247 aa22.96■■□□□ 1.27
CCDC88B-202ENST00000356786 TCEAL9Q9UHQ7 104 aa22.96■■□□□ 1.27
CCDC88B-202ENST00000356786 MX1P20591 662 aa22.96■■□□□ 1.27
CCDC88B-202ENST00000356786 NUTM1Q86Y26 1132 aa22.96■■□□□ 1.27
CCDC88B-202ENST00000356786 LRRFIP2Q9Y608 721 aaKnown RBP22.96■■□□□ 1.27
CCDC88B-202ENST00000356786 TRIM34Q9BYJ4 488 aa22.95■■□□□ 1.26
CCDC88B-202ENST00000356786 TBC1D9Q6ZT07 1266 aa22.95■■□□□ 1.26
CCDC88B-202ENST00000356786 KRT32Q14532 448 aa22.95■■□□□ 1.26
CCDC88B-202ENST00000356786 BMP2KLQ5H9B9 411 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 NUP153P49790 1475 aaKnown RBP22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 CTTNBP2Q8WZ74 1663 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 ZSCAN23Q3MJ62 389 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 TRIM22Q8IYM9 498 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 CD109Q6YHK3 1445 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 TRIM27P14373 513 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 UGGT2Q9NYU1 1516 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 ODF2Q5BJF6 829 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 ANO10Q9NW15 660 aa22.94■■□□□ 1.26
CCDC88B-202ENST00000356786 RAPGEF6Q8TEU7 1601 aa22.93■■□□□ 1.26
CCDC88B-202ENST00000356786 EPB41L2O43491 1005 aaKnown RBP22.93■■□□□ 1.26
CCDC88B-202ENST00000356786 GTF2F1P35269 517 aaKnown RBP eCLIP22.93■■□□□ 1.26
CCDC88B-202ENST00000356786 EVA1CP58658 441 aa22.93■■□□□ 1.26
CCDC88B-202ENST00000356786 NFE2L2Q16236 605 aa22.93■■□□□ 1.26
CCDC88B-202ENST00000356786 ZFYVE27Q5T4F4 411 aa22.93■■□□□ 1.26
CCDC88B-202ENST00000356786 NLRP2Q9NX02 1062 aa22.93■■□□□ 1.26
CCDC88B-202ENST00000356786 DDX54Q8TDD1 881 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-202ENST00000356786 CRACR2AQ9BSW2 395 aa22.92■■□□□ 1.26
CCDC88B-202ENST00000356786 GBP3Q9H0R5 595 aa22.92■■□□□ 1.26
CCDC88B-202ENST00000356786 ZSCAN12O43309 604 aa22.92■■□□□ 1.26
CCDC88B-202ENST00000356786 PRPF40BQ6NWY9 871 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-202ENST00000356786 ATP10BO94823 1461 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms