RNA–Protein interactions for RNA: ENST00000355354.11

CD47-201, Transcript of CD47 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD47, Length 5,020 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-201ENST00000355354 AMER1Q5JTC6 1135 aaPredicted RBP7.72□□□□□ -1.17
CD47-201ENST00000355354 PANK1Q8TE04 598 aa7.72□□□□□ -1.17
CD47-201ENST00000355354 RBM42Q9BTD8 480 aaKnown RBP7.72□□□□□ -1.17
CD47-201ENST00000355354 PIP4K2BP78356 416 aa7.72□□□□□ -1.17
CD47-201ENST00000355354 PLPPR3Q6T4P5 718 aa7.72□□□□□ -1.17
CD47-201ENST00000355354 AFF2P51816 1311 aa7.71□□□□□ -1.17
CD47-201ENST00000355354 SVEP1Q4LDE5 3571 aa7.71□□□□□ -1.18
CD47-201ENST00000355354 EIF4G2P78344 907 aaKnown RBP eCLIP7.71□□□□□ -1.18
CD47-201ENST00000355354 C8orf34Q49A92 452 aa7.71□□□□□ -1.18
CD47-201ENST00000355354 DUSP27Q5VZP5 1158 aa7.7□□□□□ -1.18
CD47-201ENST00000355354 DDX17Q92841 729 aaKnown RBP7.7□□□□□ -1.18
CD47-201ENST00000355354 ORAI2Q96SN7 254 aa7.7□□□□□ -1.18
CD47-201ENST00000355354 SBF1O95248 1867 aa7.7□□□□□ -1.18
CD47-201ENST00000355354 BCORQ6W2J9 1755 aa7.69□□□□□ -1.18
CD47-201ENST00000355354 PROSER2Q86WR7 435 aaPredicted RBP7.69□□□□□ -1.18
CD47-201ENST00000355354 APAF1O14727 1248 aa7.69□□□□□ -1.18
CD47-201ENST00000355354 ERBB4Q15303 1308 aa7.69□□□□□ -1.18
CD47-201ENST00000355354 SMG1Q96Q15 3661 aaKnown RBP7.68□□□□□ -1.18
CD47-201ENST00000355354 BRD4O60885 1362 aaPredicted RBP7.68□□□□□ -1.18
CD47-201ENST00000355354 CLSPNQ9HAW4 1339 aa7.68□□□□□ -1.18
CD47-201ENST00000355354 PKP1Q13835 747 aa7.68□□□□□ -1.18
CD47-201ENST00000355354 ZNF772Q68DY9 489 aaPredicted RBP7.68□□□□□ -1.18
CD47-201ENST00000355354 OVOS2A0A0J9YW53 1432 aa7.68□□□□□ -1.18
CD47-201ENST00000355354 OVOS2Q6IE36 1432 aa7.68□□□□□ -1.18
CD47-201ENST00000355354 RGS3P49796 1198 aa7.68□□□□□ -1.18
CD47-201ENST00000355354 TSR2Q969E8 191 aaKnown RBP7.68□□□□□ -1.18
CD47-201ENST00000355354 ZNF521Q96K83 1311 aa7.67□□□□□ -1.18
CD47-201ENST00000355354 IL25Q9H293 177 aa7.67□□□□□ -1.18
CD47-201ENST00000355354 CHGBP05060 677 aa7.67□□□□□ -1.18
CD47-201ENST00000355354 PELP1Q8IZL8 1130 aaKnown RBP7.67□□□□□ -1.18
CD47-201ENST00000355354 NSD2O96028 1365 aa7.66□□□□□ -1.18
CD47-201ENST00000355354 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.66□□□□□ -1.18
CD47-201ENST00000355354 DICER1Q9UPY3 1922 aaKnown RBP7.66□□□□□ -1.18
CD47-201ENST00000355354 CARD11Q9BXL7 1154 aa7.66□□□□□ -1.18
CD47-201ENST00000355354 ZBED9Q6R2W3 1325 aa7.65□□□□□ -1.18
CD47-201ENST00000355354 MAP1AP78559 2803 aaPredicted RBP7.65□□□□□ -1.18
CD47-201ENST00000355354 USP6P35125 1406 aa7.65□□□□□ -1.18
CD47-201ENST00000355354 CCER2I3L3R5 266 aa7.65□□□□□ -1.18
CD47-201ENST00000355354 CHD9Q3L8U1 2897 aa7.65□□□□□ -1.18
CD47-201ENST00000355354 VPS72Q15906 364 aa7.65□□□□□ -1.18
CD47-201ENST00000355354 BACH2Q9BYV9 841 aa7.65□□□□□ -1.18
CD47-201ENST00000355354 RRAGDQ9NQL2 400 aaPredicted RBP7.65□□□□□ -1.18
CD47-201ENST00000355354 BAZ2BQ9UIF8 2168 aaKnown RBP7.65□□□□□ -1.18
CD47-201ENST00000355354 USP31Q70CQ4 1352 aa7.65□□□□□ -1.18
CD47-201ENST00000355354 PDE4AP27815 886 aa7.65□□□□□ -1.19
CD47-201ENST00000355354 LRRC59Q96AG4 307 aaKnown RBP7.65□□□□□ -1.19
CD47-201ENST00000355354 AFDNP55196 1824 aaKnown RBP7.65□□□□□ -1.19
CD47-201ENST00000355354 RBM6P78332 1123 aaKnown RBP7.64□□□□□ -1.19
CD47-201ENST00000355354 GAS2L3Q86XJ1 694 aa7.64□□□□□ -1.19
CD47-201ENST00000355354 SPATA31A5Q5VU36 1347 aa7.63□□□□□ -1.19
CD47-201ENST00000355354 SPATA31A7Q8IWB4 1347 aa7.63□□□□□ -1.19
CD47-201ENST00000355354 NUTM2FA1L443 756 aa7.63□□□□□ -1.19
CD47-201ENST00000355354 OTUD7AQ8TE49 926 aaPredicted RBP7.63□□□□□ -1.19
CD47-201ENST00000355354 MPNDQ8N594 471 aa7.63□□□□□ -1.19
CD47-201ENST00000355354 TSPYL6Q8N831 410 aa7.63□□□□□ -1.19
CD47-201ENST00000355354 COG6Q9Y2V7 657 aa7.63□□□□□ -1.19
CD47-201ENST00000355354 MYH14Q7Z406 1995 aaKnown RBP7.63□□□□□ -1.19
CD47-201ENST00000355354 ARHGEF10O15013 1369 aa7.63□□□□□ -1.19
CD47-201ENST00000355354 DCTN1Q14203 1278 aa7.62□□□□□ -1.19
CD47-201ENST00000355354 MAP3K5Q99683 1374 aa7.62□□□□□ -1.19
CD47-201ENST00000355354 ELL2O00472 640 aaPredicted RBP7.62□□□□□ -1.19
CD47-201ENST00000355354 SGIP1Q9BQI5 828 aa7.62□□□□□ -1.19
CD47-201ENST00000355354 ANKRD31Q8N7Z5 1873 aa7.62□□□□□ -1.19
CD47-201ENST00000355354 SMG6Q86US8 1419 aaKnown RBP7.62□□□□□ -1.19
CD47-201ENST00000355354 KDM2BQ8NHM5 1336 aa7.62□□□□□ -1.19
CD47-201ENST00000355354 ADAMTSL1Q8N6G6 1762 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 PHACTR3Q96KR7 559 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 TNRC18O15417 2968 aaPredicted RBP7.61□□□□□ -1.19
CD47-201ENST00000355354 THSD7BQ9C0I4 1608 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 PARD3Q8TEW0 1356 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 PLEKHG3A1L390 1219 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 FAM83GA6ND36 823 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 TSHZ3Q63HK5 1081 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 VGFO15240 615 aaPredicted RBP7.61□□□□□ -1.19
CD47-201ENST00000355354 GJD4Q96KN9 370 aaPredicted RBP7.61□□□□□ -1.19
CD47-201ENST00000355354 CSMD1Q96PZ7 3565 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 SCN7AQ01118 1682 aa7.61□□□□□ -1.19
CD47-201ENST00000355354 FRAT1Q92837 279 aaPredicted RBP7.6□□□□□ -1.19
CD47-201ENST00000355354 FANCIQ9NVI1 1328 aa7.6□□□□□ -1.19
CD47-201ENST00000355354 RRP1P56182 461 aaKnown RBP7.6□□□□□ -1.19
CD47-201ENST00000355354 SIRT2Q8IXJ6 389 aa7.6□□□□□ -1.19
CD47-201ENST00000355354 MGAQ8IWI9 3026 aa7.6□□□□□ -1.19
CD47-201ENST00000355354 NPHP3Q7Z494 1330 aa7.6□□□□□ -1.19
CD47-201ENST00000355354 CCDC125Q86Z20 511 aa7.6□□□□□ -1.19
CD47-201ENST00000355354 SLKQ9H2G2 1235 aaPredicted RBP7.6□□□□□ -1.19
CD47-201ENST00000355354 TNS2Q63HR2 1409 aa7.6□□□□□ -1.19
CD47-201ENST00000355354 NUDCQ9Y266 331 aa7.59□□□□□ -1.19
CD47-201ENST00000355354 WAPLQ7Z5K2 1190 aa7.59□□□□□ -1.19
CD47-201ENST00000355354 C1orf115Q9H7X2 142 aa7.59□□□□□ -1.19
CD47-201ENST00000355354 ZZEF1O43149 2961 aa7.59□□□□□ -1.19
CD47-201ENST00000355354 C16orf71Q8IYS4 520 aaPredicted RBP7.59□□□□□ -1.19
CD47-201ENST00000355354 CAMKK2Q96RR4 588 aa7.59□□□□□ -1.19
CD47-201ENST00000355354 SPATA31A1Q5TZJ5 1347 aa7.59□□□□□ -1.19
CD47-201ENST00000355354 HDGFP51858 240 aaKnown RBP7.59□□□□□ -1.19
CD47-201ENST00000355354 TRAK1Q9UPV9 953 aa7.59□□□□□ -1.19
CD47-201ENST00000355354 RXRBP28702 533 aa7.58□□□□□ -1.2
CD47-201ENST00000355354 UNC5CLQ8IV45 518 aa7.58□□□□□ -1.2
CD47-201ENST00000355354 MRC1P22897 1456 aa7.58□□□□□ -1.2
CD47-201ENST00000355354 PPP4R2Q9NY27 417 aa7.58□□□□□ -1.2
CD47-201ENST00000355354 COL11A2P13942 1736 aaPredicted RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms