RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 TNRC18O15417 2968 aaPredicted RBP11.49□□□□□ -0.57
CD44-205ENST00000352818 AMIGO3Q86WK7 504 aa11.49□□□□□ -0.57
CD44-205ENST00000352818 C16orf71Q8IYS4 520 aaPredicted RBP11.49□□□□□ -0.57
CD44-205ENST00000352818 NSD2O96028 1365 aa11.49□□□□□ -0.57
CD44-205ENST00000352818 KCPQ6ZWJ8 1503 aa11.49□□□□□ -0.57
CD44-205ENST00000352818 KIAA1210Q9ULL0 1709 aa11.49□□□□□ -0.57
CD44-205ENST00000352818 SMIM5Q71RC9 77 aa11.48□□□□□ -0.57
CD44-205ENST00000352818 ARHGEF25Q86VW2 580 aa11.48□□□□□ -0.57
CD44-205ENST00000352818 RRAGCQ9HB90 399 aa11.48□□□□□ -0.57
CD44-205ENST00000352818 ERBB3P21860 1342 aa11.48□□□□□ -0.57
CD44-205ENST00000352818 CPSF1Q10570 1443 aaKnown RBP11.47□□□□□ -0.57
CD44-205ENST00000352818 CENPBP07199 599 aaPredicted RBP11.47□□□□□ -0.57
CD44-205ENST00000352818 SMC1BQ8NDV3 1235 aa11.47□□□□□ -0.57
CD44-205ENST00000352818 PXDNLA1KZ92 1463 aa11.46□□□□□ -0.57
CD44-205ENST00000352818 CCDC7Q96M83 1385 aa11.46□□□□□ -0.57
CD44-205ENST00000352818 C9orf131Q5VYM1 1079 aa11.46□□□□□ -0.57
CD44-205ENST00000352818 CDK19Q9BWU1 502 aa11.46□□□□□ -0.57
CD44-205ENST00000352818 CCDC61Q9Y6R9 512 aa11.46□□□□□ -0.57
CD44-205ENST00000352818 QRICH2Q9H0J4 1663 aa11.46□□□□□ -0.58
CD44-205ENST00000352818 ITSN1Q15811 1721 aa11.45□□□□□ -0.58
CD44-205ENST00000352818 CSB-PGBD3P0DP91 1061 aa11.44□□□□□ -0.58
CD44-205ENST00000352818 NLRP6P59044 892 aa11.44□□□□□ -0.58
CD44-205ENST00000352818 EIF4G2P78344 907 aaKnown RBP eCLIP11.43□□□□□ -0.58
CD44-205ENST00000352818 ARHGAP27Q6ZUM4 889 aa11.43□□□□□ -0.58
CD44-205ENST00000352818 CCNL1Q9UK58 526 aaPredicted RBP11.43□□□□□ -0.58
CD44-205ENST00000352818 PRIM1P49642 420 aaKnown RBP11.42□□□□□ -0.58
CD44-205ENST00000352818 MKRN1Q9UHC7 482 aaKnown RBP11.42□□□□□ -0.58
CD44-205ENST00000352818 LY75O60449 1722 aa11.42□□□□□ -0.58
CD44-205ENST00000352818 KIAA1551Q9HCM1 1747 aa11.42□□□□□ -0.58
CD44-205ENST00000352818 PLEKHG2Q9H7P9 1386 aa11.41□□□□□ -0.58
CD44-205ENST00000352818 PDE4DIPQ5VU43 2346 aa11.41□□□□□ -0.58
CD44-205ENST00000352818 HSPA5P11021 654 aaKnown RBP11.41□□□□□ -0.58
CD44-205ENST00000352818 CTCFP49711 727 aaPredicted RBP11.41□□□□□ -0.58
CD44-205ENST00000352818 LBX1P52954 281 aa11.41□□□□□ -0.58
CD44-205ENST00000352818 BCS1LQ9Y276 419 aa11.41□□□□□ -0.58
CD44-205ENST00000352818 RGPD5Q99666 1765 aa11.41□□□□□ -0.58
CD44-205ENST00000352818 KDM2BQ8NHM5 1336 aa11.4□□□□□ -0.58
CD44-205ENST00000352818 IL2RBP14784 551 aa11.4□□□□□ -0.58
CD44-205ENST00000352818 USP54Q70EL1 1684 aa11.4□□□□□ -0.59
CD44-205ENST00000352818 A0A0G2JLW4 131 aa11.39□□□□□ -0.59
CD44-205ENST00000352818 ANKRD36BQ8N2N9 1353 aa11.39□□□□□ -0.59
CD44-205ENST00000352818 CCDC85CA6NKD9 419 aa11.38□□□□□ -0.59
CD44-205ENST00000352818 DDX10Q13206 875 aaKnown RBP11.38□□□□□ -0.59
CD44-205ENST00000352818 PIK3C2AO00443 1686 aa11.38□□□□□ -0.59
CD44-205ENST00000352818 TOGARAM1Q9Y4F4 1720 aa11.38□□□□□ -0.59
CD44-205ENST00000352818 NFAT5O94916 1531 aa11.37□□□□□ -0.59
CD44-205ENST00000352818 HSPA8P11142 646 aaKnown RBP11.37□□□□□ -0.59
CD44-205ENST00000352818 DDX54Q8TDD1 881 aaKnown RBP11.37□□□□□ -0.59
CD44-205ENST00000352818 SYTL4Q96C24 671 aaPredicted RBP11.37□□□□□ -0.59
CD44-205ENST00000352818 WBP1LQ9NX94 342 aa11.37□□□□□ -0.59
CD44-205ENST00000352818 SOX12O15370 315 aa11.36□□□□□ -0.59
CD44-205ENST00000352818 KCNA3P22001 575 aa11.36□□□□□ -0.59
CD44-205ENST00000352818 FLAD1Q8NFF5 587 aa11.36□□□□□ -0.59
CD44-205ENST00000352818 NLRP2Q9NX02 1062 aa11.36□□□□□ -0.59
CD44-205ENST00000352818 CNTNAP1P78357 1384 aa11.36□□□□□ -0.59
CD44-205ENST00000352818 WASHC2AQ641Q2 1341 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 PKD1L3Q7Z443 1732 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 POTECB2RU33 542 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 CCER2I3L3R5 266 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 DPEP1P16444 411 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 CREBZFQ9NS37 354 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 RNF181Q9P0P0 153 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 USP47Q96K76 1375 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 TNRC6CQ9HCJ0 1690 aaKnown RBP11.35□□□□□ -0.59
CD44-205ENST00000352818 KAT6BQ8WYB5 2073 aa11.35□□□□□ -0.59
CD44-205ENST00000352818 FCHSD2O94868 740 aa11.34□□□□□ -0.59
CD44-205ENST00000352818 TGFB2P61812 414 aa11.34□□□□□ -0.59
CD44-205ENST00000352818 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.33□□□□□ -0.6
CD44-205ENST00000352818 VEGFBP49765 207 aa11.33□□□□□ -0.6
CD44-205ENST00000352818 N4BP2Q86UW6 1770 aaPredicted RBP11.33□□□□□ -0.6
CD44-205ENST00000352818 ANP32CO43423 234 aa11.32□□□□□ -0.6
CD44-205ENST00000352818 PHF14O94880 888 aa11.32□□□□□ -0.6
CD44-205ENST00000352818 MMP10P09238 476 aa11.32□□□□□ -0.6
CD44-205ENST00000352818 AIDAQ96BJ3 306 aa11.32□□□□□ -0.6
CD44-205ENST00000352818 DCAF5Q96JK2 942 aa11.32□□□□□ -0.6
CD44-205ENST00000352818 STAC3Q96MF2 364 aa11.32□□□□□ -0.6
CD44-205ENST00000352818 C5P01031 1676 aa11.32□□□□□ -0.6
CD44-205ENST00000352818 KIF13BQ9NQT8 1826 aa11.32□□□□□ -0.6
CD44-205ENST00000352818 VEGFAP15692 232 aaPredicted RBP11.31□□□□□ -0.6
CD44-205ENST00000352818 KCNH5Q8NCM2 988 aa11.31□□□□□ -0.6
CD44-205ENST00000352818 CABP1Q9NZU7 370 aa11.31□□□□□ -0.6
CD44-205ENST00000352818 DOT1LQ8TEK3 1739 aa11.31□□□□□ -0.6
CD44-205ENST00000352818 CABP2Q9NPB3 220 aa11.3□□□□□ -0.6
CD44-205ENST00000352818 ROCK2O75116 1388 aaKnown RBP11.29□□□□□ -0.6
CD44-205ENST00000352818 KDM6AO15550 1401 aaPredicted RBP11.29□□□□□ -0.6
CD44-205ENST00000352818 POTEIP0CG38 1075 aa11.29□□□□□ -0.6
CD44-205ENST00000352818 POTEJP0CG39 1038 aa11.29□□□□□ -0.6
CD44-205ENST00000352818 ANKRD24Q8TF21 1146 aa11.29□□□□□ -0.6
CD44-205ENST00000352818 KIF7Q2M1P5 1343 aa11.29□□□□□ -0.6
CD44-205ENST00000352818 TTC21BQ7Z4L5 1316 aa11.29□□□□□ -0.6
CD44-205ENST00000352818 BRCA1P38398 1863 aaKnown RBP11.28□□□□□ -0.6
CD44-205ENST00000352818 GLTPD2A6NH11 291 aa11.28□□□□□ -0.6
CD44-205ENST00000352818 DCAF11Q8TEB1 546 aa11.28□□□□□ -0.6
CD44-205ENST00000352818 YTHDC1Q96MU7 727 aaKnown RBP11.28□□□□□ -0.6
CD44-205ENST00000352818 C4BP0C0L5 1744 aa11.28□□□□□ -0.6
CD44-205ENST00000352818 NSD3Q9BZ95 1437 aa11.27□□□□□ -0.6
CD44-205ENST00000352818 RASSF7Q02833 373 aa11.27□□□□□ -0.61
CD44-205ENST00000352818 AK7Q96M32 723 aa11.27□□□□□ -0.61
CD44-205ENST00000352818 UBR3Q6ZT12 1888 aa11.27□□□□□ -0.61
CD44-205ENST00000352818 PALLDQ8WX93 1383 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms