RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 VPS72Q15906 364 aa25.1■■□□□ 1.61
CHMP4A-201ENST00000347519 NFE2L2Q16236 605 aa25.1■■□□□ 1.61
CHMP4A-201ENST00000347519 RAPGEF4Q8WZA2 1011 aa25.09■■□□□ 1.61
CHMP4A-201ENST00000347519 PKD1L3Q7Z443 1732 aa25.09■■□□□ 1.61
CHMP4A-201ENST00000347519 DISP2A7MBM2 1401 aa25.09■■□□□ 1.61
CHMP4A-201ENST00000347519 TATP17735 454 aaPredicted RBP25.08■■□□□ 1.61
CHMP4A-201ENST00000347519 CCDC9Q9Y3X0 531 aaKnown RBP25.08■■□□□ 1.61
CHMP4A-201ENST00000347519 NEFMP07197 916 aa25.07■■□□□ 1.6
CHMP4A-201ENST00000347519 OVOS2A0A0G2JMS6 1433 aa25.07■■□□□ 1.6
CHMP4A-201ENST00000347519 ATRNO75882 1429 aa25.07■■□□□ 1.6
CHMP4A-201ENST00000347519 SHANK3Q9BYB0 1731 aa25.07■■□□□ 1.6
CHMP4A-201ENST00000347519 GLI3P10071 1580 aa25.06■■□□□ 1.6
CHMP4A-201ENST00000347519 IL2RBP14784 551 aa25.05■■□□□ 1.6
CHMP4A-201ENST00000347519 RIPK4P57078 832 aa25.05■■□□□ 1.6
CHMP4A-201ENST00000347519 ZNF772Q68DY9 489 aaPredicted RBP25.05■■□□□ 1.6
CHMP4A-201ENST00000347519 TRIM35Q9UPQ4 493 aa25.05■■□□□ 1.6
CHMP4A-201ENST00000347519 PLEKHO1Q53GL0 409 aaPredicted RBP25.05■■□□□ 1.6
CHMP4A-201ENST00000347519 ZBED9Q6R2W3 1325 aa25.04■■□□□ 1.6
CHMP4A-201ENST00000347519 GAS2L2Q8NHY3 880 aa25.03■■□□□ 1.6
CHMP4A-201ENST00000347519 ZNF521Q96K83 1311 aa25.02■■□□□ 1.6
CHMP4A-201ENST00000347519 AMOTQ4VCS5 1084 aa25.02■■□□□ 1.6
CHMP4A-201ENST00000347519 THRAP3Q9Y2W1 955 aaKnown RBP25.02■■□□□ 1.6
CHMP4A-201ENST00000347519 ZNF530Q6P9A1 599 aaPredicted RBP25.01■■□□□ 1.59
CHMP4A-201ENST00000347519 TRPC5Q9UL62 973 aaPredicted RBP25.01■■□□□ 1.59
CHMP4A-201ENST00000347519 VIRMAQ69YN4 1812 aaKnown RBP25■■□□□ 1.59
CHMP4A-201ENST00000347519 BARGINQ6ZT62 677 aa25■■□□□ 1.59
CHMP4A-201ENST00000347519 WWC1Q8IX03 1113 aa25■■□□□ 1.59
CHMP4A-201ENST00000347519 QTRT2Q9H974 415 aaKnown RBP25■■□□□ 1.59
CHMP4A-201ENST00000347519 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25■■□□□ 1.596e-7■■■■□ 20.8
CHMP4A-201ENST00000347519 PLEKHG2Q9H7P9 1386 aa25■■□□□ 1.59
CHMP4A-201ENST00000347519 DCTN1Q14203 1278 aa24.99■■□□□ 1.59
CHMP4A-201ENST00000347519 FAM98CQ17RN3 349 aaKnown RBP24.99■■□□□ 1.59
CHMP4A-201ENST00000347519 CCDC27Q2M243 656 aa24.99■■□□□ 1.59
CHMP4A-201ENST00000347519 NCBP3Q53F19 620 aaKnown RBP24.99■■□□□ 1.59
CHMP4A-201ENST00000347519 GJD4Q96KN9 370 aaPredicted RBP24.99■■□□□ 1.59
CHMP4A-201ENST00000347519 LRRC37A3O60309 1634 aa24.98■■□□□ 1.59
CHMP4A-201ENST00000347519 CYP27B1O15528 508 aa24.98■■□□□ 1.59
CHMP4A-201ENST00000347519 ZCRB1Q8TBF4 217 aaKnown RBP24.98■■□□□ 1.59
CHMP4A-201ENST00000347519 THUMPD2Q9BTF0 503 aaKnown RBP24.98■■□□□ 1.59
CHMP4A-201ENST00000347519 SPG7Q9UQ90 795 aa24.98■■□□□ 1.59
CHMP4A-201ENST00000347519 NGEFQ8N5V2 710 aa24.97■■□□□ 1.59
CHMP4A-201ENST00000347519 MAP3K5Q99683 1374 aa24.97■■□□□ 1.59
CHMP4A-201ENST00000347519 THSD7AQ9UPZ6 1657 aa24.97■■□□□ 1.59
CHMP4A-201ENST00000347519 GNAT3A8MTJ3 354 aa24.95■■□□□ 1.59
CHMP4A-201ENST00000347519 PHKG2P15735 406 aa24.95■■□□□ 1.59
CHMP4A-201ENST00000347519 AKAP4Q5JQC9 854 aa24.95■■□□□ 1.59
CHMP4A-201ENST00000347519 MCM10Q7L590 875 aa24.95■■□□□ 1.59
CHMP4A-201ENST00000347519 IL17REQ8NFR9 667 aa24.93■■□□□ 1.58
CHMP4A-201ENST00000347519 CDCA7LQ96GN5 454 aa24.93■■□□□ 1.58
CHMP4A-201ENST00000347519 CDCA7Q9BWT1 371 aaPredicted RBP24.93■■□□□ 1.58
CHMP4A-201ENST00000347519 SPINK5Q9NQ38 1064 aaPredicted RBP24.93■■□□□ 1.58
CHMP4A-201ENST00000347519 TNS2Q63HR2 1409 aa24.93■■□□□ 1.58
CHMP4A-201ENST00000347519 ADAMTS7Q9UKP4 1686 aa24.93■■□□□ 1.58
CHMP4A-201ENST00000347519 DDX54Q8TDD1 881 aaKnown RBP24.93■■□□□ 1.58
CHMP4A-201ENST00000347519 LGR6Q9HBX8 967 aa24.93■■□□□ 1.58
CHMP4A-201ENST00000347519 SCN11AQ9UI33 1791 aa24.92■■□□□ 1.58
CHMP4A-201ENST00000347519 C1orf141Q5JVX7 400 aa24.92■■□□□ 1.58
CHMP4A-201ENST00000347519 MPRIPQ6WCQ1 1025 aa24.92■■□□□ 1.58
CHMP4A-201ENST00000347519 IFNL2Q8IZJ0 200 aa24.92■■□□□ 1.58
CHMP4A-201ENST00000347519 PCDH11XQ9BZA7 1347 aa24.91■■□□□ 1.58
CHMP4A-201ENST00000347519 PCDH11YQ9BZA8 1340 aa24.91■■□□□ 1.58
CHMP4A-201ENST00000347519 EXOC5O00471 708 aa24.91■■□□□ 1.58
CHMP4A-201ENST00000347519 KDM6AO15550 1401 aaPredicted RBP24.91■■□□□ 1.58
CHMP4A-201ENST00000347519 HTATSF1O43719 755 aaKnown RBP24.91■■□□□ 1.58
CHMP4A-201ENST00000347519 LMOD3Q0VAK6 560 aa24.91■■□□□ 1.58
CHMP4A-201ENST00000347519 DDB1Q16531 1140 aa24.9■■□□□ 1.58
CHMP4A-201ENST00000347519 WDR63Q8IWG1 891 aa24.9■■□□□ 1.58
CHMP4A-201ENST00000347519 RTF1Q92541 710 aaKnown RBP24.9■■□□□ 1.58
CHMP4A-201ENST00000347519 ONECUT3O60422 494 aaPredicted RBP24.89■■□□□ 1.57
CHMP4A-201ENST00000347519 TOGARAM1Q9Y4F4 1720 aa24.88■■□□□ 1.57
CHMP4A-201ENST00000347519 RNMTO43148 476 aaKnown RBP24.88■■□□□ 1.57
CHMP4A-201ENST00000347519 RXRBP28702 533 aa24.88■■□□□ 1.57
CHMP4A-201ENST00000347519 GOLGA2Q08379 1002 aa24.88■■□□□ 1.57
CHMP4A-201ENST00000347519 CEMIPQ8WUJ3 1361 aa24.88■■□□□ 1.57
CHMP4A-201ENST00000347519 SLFN5Q08AF3 891 aa24.86■■□□□ 1.57
CHMP4A-201ENST00000347519 NKX1-1Q15270 411 aaPredicted RBP24.86■■□□□ 1.57
CHMP4A-201ENST00000347519 MARCH10Q8NA82 808 aaPredicted RBP24.86■■□□□ 1.57
CHMP4A-201ENST00000347519 SIPA1L3O60292 1781 aaPredicted RBP24.86■■□□□ 1.57
CHMP4A-201ENST00000347519 A0A0G2JS52 829 aa24.85■■□□□ 1.57
CHMP4A-201ENST00000347519 MYT1Q01538 1121 aa24.85■■□□□ 1.57
CHMP4A-201ENST00000347519 BRWD3Q6RI45 1802 aa24.84■■□□□ 1.57
CHMP4A-201ENST00000347519 RBM6P78332 1123 aaKnown RBP24.84■■□□□ 1.57
CHMP4A-201ENST00000347519 SEPT12Q8IYM1 358 aa24.84■■□□□ 1.57
CHMP4A-201ENST00000347519 PDE3BQ13370 1112 aa24.83■■□□□ 1.57
CHMP4A-201ENST00000347519 TRMT2AQ8IZ69 625 aaKnown RBP24.83■■□□□ 1.57
CHMP4A-201ENST00000347519 IL16Q14005 1332 aa24.83■■□□□ 1.57
CHMP4A-201ENST00000347519 ZNF853P0CG23 659 aa24.82■■□□□ 1.56
CHMP4A-201ENST00000347519 DCAF5Q96JK2 942 aa24.82■■□□□ 1.56
CHMP4A-201ENST00000347519 HSP90AB1P08238 724 aaKnown RBP24.81■■□□□ 1.56
CHMP4A-201ENST00000347519 LAS1LQ9Y4W2 734 aaKnown RBP24.81■■□□□ 1.56
CHMP4A-201ENST00000347519 MRC1P22897 1456 aa24.8■■□□□ 1.56
CHMP4A-201ENST00000347519 DOT1LQ8TEK3 1739 aa24.8■■□□□ 1.56
CHMP4A-201ENST00000347519 E9PSI1 815 aa24.8■■□□□ 1.56
CHMP4A-201ENST00000347519 DUSP27Q5VZP5 1158 aa24.8■■□□□ 1.56
CHMP4A-201ENST00000347519 TSR2Q969E8 191 aaKnown RBP24.8■■□□□ 1.56
CHMP4A-201ENST00000347519 MIS18AQ9NYP9 233 aa24.8■■□□□ 1.56
CHMP4A-201ENST00000347519 ITGB4P16144 1822 aa24.79■■□□□ 1.56
CHMP4A-201ENST00000347519 CALD1Q05682 793 aaKnown RBP24.79■■□□□ 1.56
CHMP4A-201ENST00000347519 IFT57Q9NWB7 429 aa24.79■■□□□ 1.56
CHMP4A-201ENST00000347519 CFAP44Q96MT7 982 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms