RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 EYA1Q99502 592 aa24.32■■□□□ 1.48
COL9A3-201ENST00000343916 GCC1Q96CN9 775 aa24.32■■□□□ 1.48
COL9A3-201ENST00000343916 ARHGEF10O15013 1369 aa24.31■■□□□ 1.48
COL9A3-201ENST00000343916 PIK3C2AO00443 1686 aa24.3■■□□□ 1.48
COL9A3-201ENST00000343916 CEP170BQ9Y4F5 1589 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-201ENST00000343916 CRB1P82279 1406 aa24.3■■□□□ 1.48
COL9A3-201ENST00000343916 RBM33Q96EV2 1170 aaKnown RBP24.29■■□□□ 1.48
COL9A3-201ENST00000343916 XRN1Q8IZH2 1706 aaKnown RBP24.29■■□□□ 1.48
COL9A3-201ENST00000343916 FMN2Q9NZ56 1722 aa24.29■■□□□ 1.48
COL9A3-201ENST00000343916 RTF1Q92541 710 aaKnown RBP24.27■■□□□ 1.48
COL9A3-201ENST00000343916 RGS12O14924 1447 aa24.27■■□□□ 1.48
COL9A3-201ENST00000343916 KIAA0232Q92628 1395 aa24.27■■□□□ 1.48
COL9A3-201ENST00000343916 KDRP35968 1356 aa24.26■■□□□ 1.47
COL9A3-201ENST00000343916 IGSF1Q8N6C5 1336 aa24.26■■□□□ 1.47
COL9A3-201ENST00000343916 INTS3Q68E01 1043 aaKnown RBP24.26■■□□□ 1.47
COL9A3-201ENST00000343916 SPRYD3Q8NCJ5 442 aa24.26■■□□□ 1.47
COL9A3-201ENST00000343916 ABTB2Q8N961 1025 aa24.25■■□□□ 1.47
COL9A3-201ENST00000343916 TSPYL4Q9UJ04 414 aa24.25■■□□□ 1.47
COL9A3-201ENST00000343916 SLC4A2P04920 1241 aa24.24■■□□□ 1.47
COL9A3-201ENST00000343916 HAP1P54257 671 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-201ENST00000343916 BMP2KLQ5H9B9 411 aa24.24■■□□□ 1.47
COL9A3-201ENST00000343916 C14orf37Q86TY3 774 aa24.24■■□□□ 1.47
COL9A3-201ENST00000343916 LTV1Q96GA3 475 aaPredicted RBP24.23■■□□□ 1.47
COL9A3-201ENST00000343916 ANTXR1Q9H6X2 564 aa24.23■■□□□ 1.47
COL9A3-201ENST00000343916 HOXC9P31274 260 aa24.23■■□□□ 1.47
COL9A3-201ENST00000343916 MSH6P52701 1360 aa24.22■■□□□ 1.47
COL9A3-201ENST00000343916 ANKARQ7Z5J8 1434 aa24.22■■□□□ 1.47
COL9A3-201ENST00000343916 GSE1Q14687 1217 aa24.21■■□□□ 1.47
COL9A3-201ENST00000343916 KIF24Q5T7B8 1368 aa24.2■■□□□ 1.47
COL9A3-201ENST00000343916 GAS2L2Q8NHY3 880 aa24.2■■□□□ 1.46
COL9A3-201ENST00000343916 G2E3Q7L622 706 aa24.2■■□□□ 1.46
COL9A3-201ENST00000343916 MEIS3Q99687 375 aa24.2■■□□□ 1.46
COL9A3-201ENST00000343916 PTPRCP08575 1304 aa24.19■■□□□ 1.46
COL9A3-201ENST00000343916 ATP10DQ9P241 1426 aa24.18■■□□□ 1.46
COL9A3-201ENST00000343916 F6X3S4 739 aa24.18■■□□□ 1.46
COL9A3-201ENST00000343916 DCTPP1Q9H773 170 aa24.18■■□□□ 1.46
COL9A3-201ENST00000343916 ANO8Q9HCE9 1232 aaPredicted RBP24.18■■□□□ 1.46
COL9A3-201ENST00000343916 ZNF142P52746 1687 aaPredicted RBP24.17■■□□□ 1.46
COL9A3-201ENST00000343916 MARF1Q9Y4F3 1742 aaKnown RBP24.17■■□□□ 1.46
COL9A3-201ENST00000343916 SLC4A10Q6U841 1118 aa24.17■■□□□ 1.46
COL9A3-201ENST00000343916 USHBP1Q8N6Y0 703 aa24.17■■□□□ 1.46
COL9A3-201ENST00000343916 CEP85Q6P2H3 762 aa24.16■■□□□ 1.46
COL9A3-201ENST00000343916 ANKRD44Q8N8A2 993 aa24.16■■□□□ 1.46
COL9A3-201ENST00000343916 TBC1D9Q6ZT07 1266 aa24.16■■□□□ 1.46
COL9A3-201ENST00000343916 C16orf71Q8IYS4 520 aaPredicted RBP24.16■■□□□ 1.46
COL9A3-201ENST00000343916 BRPF3Q9ULD4 1205 aa24.16■■□□□ 1.46
COL9A3-201ENST00000343916 PHF8Q9UPP1 1060 aa24.16■■□□□ 1.46
COL9A3-201ENST00000343916 RTL1A6NKG5 1358 aa24.15■■□□□ 1.46
COL9A3-201ENST00000343916 ANKLE2Q86XL3 938 aa24.15■■□□□ 1.46
COL9A3-201ENST00000343916 GNAT3A8MTJ3 354 aa24.15■■□□□ 1.46
COL9A3-201ENST00000343916 APBB1O00213 710 aa24.15■■□□□ 1.46
COL9A3-201ENST00000343916 RBM25P49756 843 aaKnown RBP24.14■■□□□ 1.45
COL9A3-201ENST00000343916 NECTIN2Q92692 538 aa24.14■■□□□ 1.45
COL9A3-201ENST00000343916 GSPT1P15170 499 aaKnown RBP24.13■■□□□ 1.45
COL9A3-201ENST00000343916 PLEKHM2Q8IWE5 1019 aa24.13■■□□□ 1.45
COL9A3-201ENST00000343916 SETD1BQ9UPS6 1966 aaKnown RBP24.13■■□□□ 1.45
COL9A3-201ENST00000343916 NWD1Q149M9 1564 aa24.13■■□□□ 1.45
COL9A3-201ENST00000343916 RPAP2Q8IXW5 612 aaPredicted RBP24.12■■□□□ 1.45
COL9A3-201ENST00000343916 IL17REQ8NFR9 667 aa24.11■■□□□ 1.45
COL9A3-201ENST00000343916 OTUD7AQ8TE49 926 aaPredicted RBP24.11■■□□□ 1.45
COL9A3-201ENST00000343916 SMARCA5O60264 1052 aaPredicted RBP24.1■■□□□ 1.45
COL9A3-201ENST00000343916 ESCO1Q5FWF5 840 aa24.1■■□□□ 1.45
COL9A3-201ENST00000343916 ZBTB7CA1YPR0 619 aa24.09■■□□□ 1.45
COL9A3-201ENST00000343916 HSCBQ8IWL3 235 aa24.09■■□□□ 1.45
COL9A3-201ENST00000343916 HTATSF1O43719 755 aaKnown RBP24.09■■□□□ 1.45
COL9A3-201ENST00000343916 CHD2O14647 1828 aaKnown RBP24.08■■□□□ 1.45
COL9A3-201ENST00000343916 PLEKHG5O94827 1062 aa24.08■■□□□ 1.45
COL9A3-201ENST00000343916 STK31Q9BXU1 1019 aa24.08■■□□□ 1.45
COL9A3-201ENST00000343916 MAP3K5Q99683 1374 aa24.08■■□□□ 1.44
COL9A3-201ENST00000343916 KIF2CQ99661 725 aa24.07■■□□□ 1.44
COL9A3-201ENST00000343916 CDC45O75419 566 aa24.06■■□□□ 1.44
COL9A3-201ENST00000343916 PSME1Q06323 249 aa24.06■■□□□ 1.44
COL9A3-201ENST00000343916 LRRC37A3O60309 1634 aa24.05■■□□□ 1.44
COL9A3-201ENST00000343916 FLIIQ13045 1269 aa24.05■■□□□ 1.44
COL9A3-201ENST00000343916 FKBP5Q13451 457 aaPredicted RBP24.05■■□□□ 1.44
COL9A3-201ENST00000343916 TTC22Q5TAA0 569 aa24.05■■□□□ 1.44
COL9A3-201ENST00000343916 CCT4P50991 539 aaKnown RBP24.04■■□□□ 1.44
COL9A3-201ENST00000343916 USP54Q70EL1 1684 aa24.04■■□□□ 1.44
COL9A3-201ENST00000343916 LTN1O94822 1766 aa24.04■■□□□ 1.44
COL9A3-201ENST00000343916 XPCQ01831 940 aaPredicted RBP24.04■■□□□ 1.44
COL9A3-201ENST00000343916 CCDC30Q5VVM6 783 aa24.04■■□□□ 1.44
COL9A3-201ENST00000343916 NBPF6Q5VWK0 638 aa24.04■■□□□ 1.44
COL9A3-201ENST00000343916 NBPF4Q96M43 638 aa24.04■■□□□ 1.44
COL9A3-201ENST00000343916 TAF7Q15545 349 aaPredicted RBP24.03■■□□□ 1.44
COL9A3-201ENST00000343916 IP6K1Q92551 441 aa24.03■■□□□ 1.44
COL9A3-201ENST00000343916 RBM42Q9BTD8 480 aaKnown RBP24.03■■□□□ 1.44
COL9A3-201ENST00000343916 CD2BP2O95400 341 aaKnown RBP24.02■■□□□ 1.44
COL9A3-201ENST00000343916 SNX21Q969T3 373 aa24.01■■□□□ 1.43
COL9A3-201ENST00000343916 CHMP5Q9NZZ3 219 aa24.01■■□□□ 1.43
COL9A3-201ENST00000343916 ORAI2Q96SN7 254 aa24■■□□□ 1.43
COL9A3-201ENST00000343916 ADGRL3Q9HAR2 1447 aa24■■□□□ 1.43
COL9A3-201ENST00000343916 LRRC59Q96AG4 307 aaKnown RBP24■■□□□ 1.43
COL9A3-201ENST00000343916 HMMRO75330 724 aa23.99■■□□□ 1.43
COL9A3-201ENST00000343916 NFAT5O94916 1531 aa23.99■■□□□ 1.43
COL9A3-201ENST00000343916 LGR6Q9HBX8 967 aa23.99■■□□□ 1.43
COL9A3-201ENST00000343916 FAM208AQ9UK61 1670 aaKnown RBP23.98■■□□□ 1.43
COL9A3-201ENST00000343916 GNAI2P04899 355 aa23.98■■□□□ 1.43
COL9A3-201ENST00000343916 SDSP20132 328 aa23.98■■□□□ 1.43
COL9A3-201ENST00000343916 EXOC6BQ9Y2D4 811 aa23.98■■□□□ 1.43
COL9A3-201ENST00000343916 NPHP4O75161 1426 aaPredicted RBP23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms