RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 ANKRD24Q8TF21 1146 aa5.39□□□□□ -1.55
MCF2-201ENST00000338585 MYH16Q9H6N6 1097 aa5.39□□□□□ -1.55
MCF2-201ENST00000338585 LAS1LQ9Y4W2 734 aaKnown RBP5.39□□□□□ -1.55
MCF2-201ENST00000338585 NHSL1Q5SYE7 1610 aa5.39□□□□□ -1.55
MCF2-201ENST00000338585 C19orf67A6NJJ6 358 aa5.39□□□□□ -1.55
MCF2-201ENST00000338585 BCAR3O75815 825 aa5.39□□□□□ -1.55
MCF2-201ENST00000338585 MCM10Q7L590 875 aa5.39□□□□□ -1.55
MCF2-201ENST00000338585 KIAA0232Q92628 1395 aa5.39□□□□□ -1.55
MCF2-201ENST00000338585 CLCN6P51797 869 aa5.38□□□□□ -1.55
MCF2-201ENST00000338585 EXOSC9Q06265 439 aaKnown RBP5.38□□□□□ -1.55
MCF2-201ENST00000338585 C20orf194Q5TEA3 1177 aa5.38□□□□□ -1.55
MCF2-201ENST00000338585 ROBO1Q9Y6N7 1651 aa5.38□□□□□ -1.55
MCF2-201ENST00000338585 COL18A1P39060 1754 aa5.38□□□□□ -1.55
MCF2-201ENST00000338585 ERBB3P21860 1342 aa5.38□□□□□ -1.55
MCF2-201ENST00000338585 IL16Q14005 1332 aa5.38□□□□□ -1.55
MCF2-201ENST00000338585 BCL2L13Q9BXK5 485 aa5.38□□□□□ -1.55
MCF2-201ENST00000338585 LMOD3Q0VAK6 560 aa5.38□□□□□ -1.55
MCF2-201ENST00000338585 RARSP54136 660 aaKnown RBP5.37□□□□□ -1.55
MCF2-201ENST00000338585 SAMD1Q6SPF0 538 aaPredicted RBP5.37□□□□□ -1.55
MCF2-201ENST00000338585 EXOC6Q8TAG9 804 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 ABCA3Q99758 1704 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 MBIPQ9NS73 344 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 CPDO75976 1380 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 ZNF853P0CG23 659 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 HAP1P54257 671 aaPredicted RBP5.37□□□□□ -1.55
MCF2-201ENST00000338585 PIP4K2BP78356 416 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 B4GALNT3Q6L9W6 998 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 PRDM11Q9NQV5 511 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 NLRP2Q9NX02 1062 aa5.37□□□□□ -1.55
MCF2-201ENST00000338585 CAMTA1Q9Y6Y1 1673 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 CRB1P82279 1406 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 NCAPD2Q15021 1401 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 ELL2O00472 640 aaPredicted RBP5.36□□□□□ -1.55
MCF2-201ENST00000338585 GNAI1P63096 354 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 TSPYL6Q8N831 410 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 GAS2L2Q8NHY3 880 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 CRBNQ96SW2 442 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 IFT57Q9NWB7 429 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 PPP4R2Q9NY27 417 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 MIS18AQ9NYP9 233 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 LMO7Q8WWI1 1683 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 PITPNM1O00562 1244 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 CSB-PGBD3P0DP91 1061 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 CALD1Q05682 793 aaKnown RBP5.36□□□□□ -1.55
MCF2-201ENST00000338585 KRT24Q2M2I5 525 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 ERICH6BQ5W0A0 696 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 FRAT1Q92837 279 aaPredicted RBP5.36□□□□□ -1.55
MCF2-201ENST00000338585 CFAP44Q96MT7 982 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 TNNQ9UQP3 1299 aa5.36□□□□□ -1.55
MCF2-201ENST00000338585 AHDC1Q5TGY3 1603 aaPredicted RBP5.35□□□□□ -1.55
MCF2-201ENST00000338585 GNAT3A8MTJ3 354 aa5.35□□□□□ -1.55
MCF2-201ENST00000338585 C8orf58Q8NAV2 365 aa5.35□□□□□ -1.55
MCF2-201ENST00000338585 IL17REQ8NFR9 667 aa5.35□□□□□ -1.55
MCF2-201ENST00000338585 SSH1Q8WYL5 1049 aa5.35□□□□□ -1.55
MCF2-201ENST00000338585 RTF1Q92541 710 aaKnown RBP5.35□□□□□ -1.55
MCF2-201ENST00000338585 MAP3K5Q99683 1374 aa5.35□□□□□ -1.55
MCF2-201ENST00000338585 FAM208AQ9UK61 1670 aaKnown RBP5.35□□□□□ -1.55
MCF2-201ENST00000338585 CHL1O00533 1208 aa5.35□□□□□ -1.55
MCF2-201ENST00000338585 TCERG1O14776 1098 aaKnown RBP5.35□□□□□ -1.55
MCF2-201ENST00000338585 ZNF530Q6P9A1 599 aaPredicted RBP5.35□□□□□ -1.55
MCF2-201ENST00000338585 LGR6Q9HBX8 967 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 SMC4Q9NTJ3 1288 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 MEGF6O75095 1541 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 ABCC6O95255 1503 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 COL5A2P05997 1499 aaPredicted RBP5.34□□□□□ -1.55
MCF2-201ENST00000338585 LRRC37A3O60309 1634 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 UBAP1LF5GYI3 381 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 TOM1O60784 492 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 VAMP4O75379 141 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 CANXP27824 592 aaKnown RBP5.34□□□□□ -1.55
MCF2-201ENST00000338585 PLEKHO1Q53GL0 409 aaPredicted RBP5.34□□□□□ -1.55
MCF2-201ENST00000338585 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.34□□□□□ -1.55
MCF2-201ENST00000338585 PANK1Q8TE04 598 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 STRN4Q9NRL3 753 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 PHLPP1O60346 1717 aa5.34□□□□□ -1.55
MCF2-201ENST00000338585 COL16A1Q07092 1604 aaPredicted RBP5.34□□□□□ -1.56
MCF2-201ENST00000338585 HTATSF1O43719 755 aaKnown RBP5.33□□□□□ -1.56
MCF2-201ENST00000338585 CT47B1P0C2W7 299 aaPredicted RBP5.33□□□□□ -1.56
MCF2-201ENST00000338585 RLBP1P12271 317 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 TWISTNBQ3B726 338 aaPredicted RBP5.33□□□□□ -1.56
MCF2-201ENST00000338585 MPRIPQ6WCQ1 1025 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 RAPGEF4Q8WZA2 1011 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 CLUAP1Q96AJ1 413 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 WDR17Q8IZU2 1322 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 LARP1Q6PKG0 1096 aaKnown RBP5.33□□□□□ -1.56
MCF2-201ENST00000338585 TOM1L2Q6ZVM7 507 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 TSPYL4Q9UJ04 414 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 ZBTB12Q9Y330 459 aaPredicted RBP5.33□□□□□ -1.56
MCF2-201ENST00000338585 CEMIPQ8WUJ3 1361 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 COL22A1Q8NFW1 1626 aaPredicted RBP5.33□□□□□ -1.56
MCF2-201ENST00000338585 TATP17735 454 aaPredicted RBP5.33□□□□□ -1.56
MCF2-201ENST00000338585 AMOTQ4VCS5 1084 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 AKAP4Q5JQC9 854 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 CCDC136Q96JN2 1154 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 COG6Q9Y2V7 657 aa5.33□□□□□ -1.56
MCF2-201ENST00000338585 ADAMTS2O95450 1211 aa5.32□□□□□ -1.56
MCF2-201ENST00000338585 C1orf141Q5JVX7 400 aa5.32□□□□□ -1.56
MCF2-201ENST00000338585 BTG4Q9NY30 223 aa5.32□□□□□ -1.56
MCF2-201ENST00000338585 USP35Q9P2H5 1018 aa5.32□□□□□ -1.56
MCF2-201ENST00000338585 NOB1Q9ULX3 412 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms