RNA–Protein interactions for RNA: ENST00000334654.4

CHGA-202, Transcript of chromogranin A, humanhuman

TSL 1 (best) BASIC

Gene CHGA, Length 1,474 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHGA-202ENST00000334654 RAPGEF4Q8WZA2 1011 aa23.28■■□□□ 1.32
CHGA-202ENST00000334654 TATP17735 454 aaPredicted RBP23.27■■□□□ 1.32
CHGA-202ENST00000334654 RBM6P78332 1123 aaKnown RBP23.27■■□□□ 1.32
CHGA-202ENST00000334654 PKD1L3Q7Z443 1732 aa23.26■■□□□ 1.31
CHGA-202ENST00000334654 CCDC146Q8IYE0 955 aa23.26■■□□□ 1.31
CHGA-202ENST00000334654 PLEKHG2Q9H7P9 1386 aa23.26■■□□□ 1.31
CHGA-202ENST00000334654 CDCA7Q9BWT1 371 aaPredicted RBP23.25■■□□□ 1.31
CHGA-202ENST00000334654 SHANK3Q9BYB0 1731 aa23.25■■□□□ 1.31
CHGA-202ENST00000334654 RUNDC1Q96C34 613 aa23.24■■□□□ 1.31
CHGA-202ENST00000334654 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.24■■□□□ 1.31
CHGA-202ENST00000334654 LRRC37A3O60309 1634 aa23.23■■□□□ 1.31
CHGA-202ENST00000334654 RXRBP28702 533 aa23.23■■□□□ 1.31
CHGA-202ENST00000334654 PNNQ9H307 717 aaKnown RBP23.23■■□□□ 1.31
CHGA-202ENST00000334654 MTHFSDQ2M296 383 aaKnown RBP23.22■■□□□ 1.31
CHGA-202ENST00000334654 ZCRB1Q8TBF4 217 aaKnown RBP23.21■■□□□ 1.31
CHGA-202ENST00000334654 AMOTQ4VCS5 1084 aa23.2■■□□□ 1.3
CHGA-202ENST00000334654 PLEKHO1Q53GL0 409 aaPredicted RBP23.2■■□□□ 1.3
CHGA-202ENST00000334654 SEPT12Q8IYM1 358 aa23.2■■□□□ 1.3
CHGA-202ENST00000334654 BRWD3Q6RI45 1802 aa23.19■■□□□ 1.3
CHGA-202ENST00000334654 DLG5Q8TDM6 1919 aa23.19■■□□□ 1.3
CHGA-202ENST00000334654 TNS2Q63HR2 1409 aa23.19■■□□□ 1.3
CHGA-202ENST00000334654 EXOC5O00471 708 aa23.18■■□□□ 1.3
CHGA-202ENST00000334654 CYP27B1O15528 508 aa23.18■■□□□ 1.3
CHGA-202ENST00000334654 DDB1Q16531 1140 aa23.18■■□□□ 1.3
CHGA-202ENST00000334654 SPG7Q9UQ90 795 aa23.18■■□□□ 1.3
CHGA-202ENST00000334654 APAF1O14727 1248 aa23.17■■□□□ 1.3
CHGA-202ENST00000334654 MAPK8IP3Q9UPT6 1336 aa23.17■■□□□ 1.3
CHGA-202ENST00000334654 TMPOP42166 694 aaKnown RBP23.16■■□□□ 1.3
CHGA-202ENST00000334654 RGS12O14924 1447 aa23.16■■□□□ 1.3
CHGA-202ENST00000334654 NFE2L2Q16236 605 aa23.15■■□□□ 1.3
CHGA-202ENST00000334654 ZNF530Q6P9A1 599 aaPredicted RBP23.15■■□□□ 1.3
CHGA-202ENST00000334654 GAS2L2Q8NHY3 880 aa23.15■■□□□ 1.3
CHGA-202ENST00000334654 PCDH11XQ9BZA7 1347 aa23.14■■□□□ 1.29
CHGA-202ENST00000334654 PCDH11YQ9BZA8 1340 aa23.14■■□□□ 1.29
CHGA-202ENST00000334654 PHKG2P15735 406 aa23.14■■□□□ 1.29
CHGA-202ENST00000334654 MARCH10Q8NA82 808 aaPredicted RBP23.14■■□□□ 1.29
CHGA-202ENST00000334654 SENP3-EIF4A1A0A087X0R7 540 aa23.13■■□□□ 1.29
CHGA-202ENST00000334654 A0A0G2JS52 829 aa23.13■■□□□ 1.29
CHGA-202ENST00000334654 NEFMP07197 916 aa23.13■■□□□ 1.29
CHGA-202ENST00000334654 MYT1Q01538 1121 aa23.13■■□□□ 1.29
CHGA-202ENST00000334654 RRP7AQ9Y3A4 280 aaKnown RBP23.13■■□□□ 1.29
CHGA-202ENST00000334654 DDX54Q8TDD1 881 aaKnown RBP23.12■■□□□ 1.29
CHGA-202ENST00000334654 AKAP4Q5JQC9 854 aa23.11■■□□□ 1.29
CHGA-202ENST00000334654 IFNL2Q8IZJ0 200 aa23.11■■□□□ 1.29
CHGA-202ENST00000334654 VIRMAQ69YN4 1812 aaKnown RBP23.11■■□□□ 1.29
CHGA-202ENST00000334654 NKX1-1Q15270 411 aaPredicted RBP23.11■■□□□ 1.29
CHGA-202ENST00000334654 RIPK4P57078 832 aa23.1■■□□□ 1.29
CHGA-202ENST00000334654 ADAMTS7Q9UKP4 1686 aa23.1■■□□□ 1.29
CHGA-202ENST00000334654 MAP3K5Q99683 1374 aa23.09■■□□□ 1.29
CHGA-202ENST00000334654 NEUROD2Q15784 382 aa23.09■■□□□ 1.29
CHGA-202ENST00000334654 TRIM35Q9UPQ4 493 aa23.09■■□□□ 1.29
CHGA-202ENST00000334654 GNAT3A8MTJ3 354 aa23.08■■□□□ 1.29
CHGA-202ENST00000334654 PDE3BQ13370 1112 aa23.08■■□□□ 1.29
CHGA-202ENST00000334654 C1orf141Q5JVX7 400 aa23.08■■□□□ 1.29
CHGA-202ENST00000334654 SCN11AQ9UI33 1791 aa23.07■■□□□ 1.28
CHGA-202ENST00000334654 KDM6AO15550 1401 aaPredicted RBP23.07■■□□□ 1.28
CHGA-202ENST00000334654 NCBP3Q53F19 620 aaKnown RBP23.07■■□□□ 1.28
CHGA-202ENST00000334654 KRT27Q7Z3Y8 459 aa23.07■■□□□ 1.28
CHGA-202ENST00000334654 IL17REQ8NFR9 667 aa23.07■■□□□ 1.28
CHGA-202ENST00000334654 LGR6Q9HBX8 967 aa23.07■■□□□ 1.28
CHGA-202ENST00000334654 FAM182BQ5T319 152 aa23.06■■□□□ 1.28
CHGA-202ENST00000334654 MPRIPQ6WCQ1 1025 aa23.06■■□□□ 1.28
CHGA-202ENST00000334654 HTATSF1O43719 755 aaKnown RBP23.05■■□□□ 1.28
CHGA-202ENST00000334654 TOGARAM1Q9Y4F4 1720 aa23.05■■□□□ 1.28
CHGA-202ENST00000334654 DCTN1Q14203 1278 aa23.05■■□□□ 1.28
CHGA-202ENST00000334654 DCAF5Q96JK2 942 aa23.05■■□□□ 1.28
CHGA-202ENST00000334654 BCL9O00512 1426 aa23.04■■□□□ 1.28
CHGA-202ENST00000334654 RNMTO43148 476 aaKnown RBP23.04■■□□□ 1.28
CHGA-202ENST00000334654 CCDC27Q2M243 656 aa23.04■■□□□ 1.28
CHGA-202ENST00000334654 MCM10Q7L590 875 aa23.04■■□□□ 1.28
CHGA-202ENST00000334654 CEMIPQ8WUJ3 1361 aa23.04■■□□□ 1.28
CHGA-202ENST00000334654 KAT6BQ8WYB5 2073 aa23.03■■□□□ 1.28
CHGA-202ENST00000334654 HSP90AB1P08238 724 aaKnown RBP23.03■■□□□ 1.28
CHGA-202ENST00000334654 SALL2Q9Y467 1007 aaPredicted RBP23.03■■□□□ 1.28
CHGA-202ENST00000334654 SBF2Q86WG5 1849 aa23.02■■□□□ 1.28
CHGA-202ENST00000334654 THUMPD2Q9BTF0 503 aaKnown RBP23.02■■□□□ 1.28
CHGA-202ENST00000334654 WWC1Q8IX03 1113 aa23.01■■□□□ 1.27
CHGA-202ENST00000334654 NGEFQ8N5V2 710 aa23.01■■□□□ 1.27
CHGA-202ENST00000334654 ITGB4P16144 1822 aa23.01■■□□□ 1.27
CHGA-202ENST00000334654 ZNF521Q96K83 1311 aa23.01■■□□□ 1.27
CHGA-202ENST00000334654 RTF1Q92541 710 aaKnown RBP23■■□□□ 1.27
CHGA-202ENST00000334654 DOT1LQ8TEK3 1739 aa23■■□□□ 1.27
CHGA-202ENST00000334654 HNRNPUQ00839 825 aaKnown RBP eCLIP22.99■■□□□ 1.27
CHGA-202ENST00000334654 LMOD3Q0VAK6 560 aa22.99■■□□□ 1.27
CHGA-202ENST00000334654 SIPA1L3O60292 1781 aaPredicted RBP22.99■■□□□ 1.27
CHGA-202ENST00000334654 EP400Q96L91 3159 aa22.99■■□□□ 1.27
CHGA-202ENST00000334654 MRC1P22897 1456 aa22.98■■□□□ 1.27
CHGA-202ENST00000334654 ERVV-2B6SEH9 535 aa22.98■■□□□ 1.27
CHGA-202ENST00000334654 FAM196AQ6ZSG2 479 aa22.96■■□□□ 1.27
CHGA-202ENST00000334654 ACSBG1Q96GR2 724 aa22.96■■□□□ 1.27
CHGA-202ENST00000334654 SLC52A2Q9HAB3 445 aa22.96■■□□□ 1.27
CHGA-202ENST00000334654 KCNQ2O43526 872 aa22.95■■□□□ 1.26
CHGA-202ENST00000334654 PRIM1P49642 420 aaKnown RBP22.95■■□□□ 1.26
CHGA-202ENST00000334654 PTF1AQ7RTS3 328 aa22.95■■□□□ 1.26
CHGA-202ENST00000334654 NFATC2IPQ8NCF5 419 aa22.94■■□□□ 1.26
CHGA-202ENST00000334654 NHSQ6T4R5 1651 aa22.94■■□□□ 1.26
CHGA-202ENST00000334654 CABP4P57796 275 aa22.92■■□□□ 1.26
CHGA-202ENST00000334654 WDR63Q8IWG1 891 aa22.92■■□□□ 1.26
CHGA-202ENST00000334654 PIGBQ92521 554 aa22.92■■□□□ 1.26
CHGA-202ENST00000334654 TEFQ10587 303 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms