RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 POLR3GLQ9BT43 218 aa24.48■■□□□ 1.51
HDDC3-201ENST00000330334 TATP17735 454 aaPredicted RBP24.46■■□□□ 1.51
HDDC3-201ENST00000330334 USHBP1Q8N6Y0 703 aa24.46■■□□□ 1.51
HDDC3-201ENST00000330334 RGPD2P0DJD1 1756 aa24.46■■□□□ 1.51
HDDC3-201ENST00000330334 PRIM1P49642 420 aaKnown RBP24.45■■□□□ 1.5
HDDC3-201ENST00000330334 PANK3Q9H999 370 aa24.45■■□□□ 1.5
HDDC3-201ENST00000330334 POLKQ9UBT6 870 aa24.45■■□□□ 1.5
HDDC3-201ENST00000330334 SLC27A3Q5K4L6 730 aa24.44■■□□□ 1.5
HDDC3-201ENST00000330334 PPM1GO15355 546 aaPredicted RBP24.43■■□□□ 1.5
HDDC3-201ENST00000330334 BTAF1O14981 1849 aa24.42■■□□□ 1.5
HDDC3-201ENST00000330334 NCAPD2Q15021 1401 aa24.42■■□□□ 1.5
HDDC3-201ENST00000330334 KAT6BQ8WYB5 2073 aa24.41■■□□□ 1.5
HDDC3-201ENST00000330334 LRRC4BQ9NT99 713 aa24.41■■□□□ 1.5
HDDC3-201ENST00000330334 NSD2O96028 1365 aa24.41■■□□□ 1.5
HDDC3-201ENST00000330334 PCDH11XQ9BZA7 1347 aa24.4■■□□□ 1.5
HDDC3-201ENST00000330334 PCDH11YQ9BZA8 1340 aa24.4■■□□□ 1.5
HDDC3-201ENST00000330334 SYTL4Q96C24 671 aaPredicted RBP24.4■■□□□ 1.5
HDDC3-201ENST00000330334 PDGFDQ9GZP0 370 aaPredicted RBP24.4■■□□□ 1.5
HDDC3-201ENST00000330334 ANKRD26Q9UPS8 1709 aa24.4■■□□□ 1.5
HDDC3-201ENST00000330334 CASZ1Q86V15 1759 aa24.39■■□□□ 1.5
HDDC3-201ENST00000330334 SHANK3Q9BYB0 1731 aa24.39■■□□□ 1.5
HDDC3-201ENST00000330334 PPP1R1BQ9UD71 204 aaPredicted RBP24.38■■□□□ 1.49
HDDC3-201ENST00000330334 EYA1Q99502 592 aa24.37■■□□□ 1.49
HDDC3-201ENST00000330334 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.37■■□□□ 1.49
HDDC3-201ENST00000330334 PAPPAQ13219 1627 aa24.36■■□□□ 1.49
HDDC3-201ENST00000330334 MAP2P11137 1827 aaKnown RBP24.35■■□□□ 1.49
HDDC3-201ENST00000330334 CYP27B1O15528 508 aa24.35■■□□□ 1.49
HDDC3-201ENST00000330334 ZBTB7AO95365 584 aa24.35■■□□□ 1.49
HDDC3-201ENST00000330334 AKT1S1Q96B36 256 aa24.35■■□□□ 1.49
HDDC3-201ENST00000330334 MTFR1LQ9H019 292 aa24.35■■□□□ 1.49
HDDC3-201ENST00000330334 PTGER2P43116 358 aa24.34■■□□□ 1.49
HDDC3-201ENST00000330334 NKX1-1Q15270 411 aaPredicted RBP24.34■■□□□ 1.49
HDDC3-201ENST00000330334 SPG7Q9UQ90 795 aa24.34■■□□□ 1.49
HDDC3-201ENST00000330334 PLEKHG2Q9H7P9 1386 aa24.33■■□□□ 1.49
HDDC3-201ENST00000330334 HMGB2P26583 209 aaKnown RBP24.33■■□□□ 1.49
HDDC3-201ENST00000330334 TNNT2P45379 298 aaPredicted RBP24.33■■□□□ 1.49
HDDC3-201ENST00000330334 ZNF827Q17R98 1081 aa24.33■■□□□ 1.49
HDDC3-201ENST00000330334 KNSTRNQ9Y448 316 aa24.33■■□□□ 1.49
HDDC3-201ENST00000330334 DOT1LQ8TEK3 1739 aa24.32■■□□□ 1.48
HDDC3-201ENST00000330334 EIF4A2Q14240 407 aaKnown RBP24.32■■□□□ 1.48
HDDC3-201ENST00000330334 ATF5Q9Y2D1 282 aaPredicted RBP24.31■■□□□ 1.48
HDDC3-201ENST00000330334 MORC1Q86VD1 984 aa24.3■■□□□ 1.48
HDDC3-201ENST00000330334 SGIP1Q9BQI5 828 aa24.3■■□□□ 1.48
HDDC3-201ENST00000330334 KIF7Q2M1P5 1343 aa24.3■■□□□ 1.48
HDDC3-201ENST00000330334 SLC16A10Q8TF71 515 aa24.29■■□□□ 1.48
HDDC3-201ENST00000330334 CCNL1Q9UK58 526 aaPredicted RBP24.28■■□□□ 1.48
HDDC3-201ENST00000330334 LY75O60449 1722 aa24.27■■□□□ 1.48
HDDC3-201ENST00000330334 PKD1L3Q7Z443 1732 aa24.27■■□□□ 1.48
HDDC3-201ENST00000330334 AMER1Q5JTC6 1135 aaPredicted RBP24.27■■□□□ 1.48
HDDC3-201ENST00000330334 IGSF1Q8N6C5 1336 aa24.27■■□□□ 1.48
HDDC3-201ENST00000330334 MPRIPQ6WCQ1 1025 aa24.26■■□□□ 1.47
HDDC3-201ENST00000330334 KCNQ4P56696 695 aa24.25■■□□□ 1.47
HDDC3-201ENST00000330334 IFNL2Q8IZJ0 200 aa24.25■■□□□ 1.47
HDDC3-201ENST00000330334 SMARCC1Q92922 1105 aaPredicted RBP24.25■■□□□ 1.47
HDDC3-201ENST00000330334 TFCP2L1Q9NZI6 479 aa24.25■■□□□ 1.47
HDDC3-201ENST00000330334 PNPLA7Q6ZV29 1317 aa24.23■■□□□ 1.47
HDDC3-201ENST00000330334 PER1O15534 1290 aaPredicted RBP24.22■■□□□ 1.47
HDDC3-201ENST00000330334 PHKG2P15735 406 aa24.22■■□□□ 1.47
HDDC3-201ENST00000330334 PIGBQ92521 554 aa24.22■■□□□ 1.47
HDDC3-201ENST00000330334 QSER1Q2KHR3 1735 aa24.21■■□□□ 1.47
HDDC3-201ENST00000330334 PALLDQ8WX93 1383 aa24.21■■□□□ 1.47
HDDC3-201ENST00000330334 DCAF8L1A6NGE4 600 aa24.21■■□□□ 1.47
HDDC3-201ENST00000330334 ARXQ96QS3 562 aa24.2■■□□□ 1.46
HDDC3-201ENST00000330334 SYT17Q9BSW7 474 aa24.19■■□□□ 1.46
HDDC3-201ENST00000330334 AMOTQ4VCS5 1084 aa24.18■■□□□ 1.46
HDDC3-201ENST00000330334 PLEKHO1Q53GL0 409 aaPredicted RBP24.18■■□□□ 1.46
HDDC3-201ENST00000330334 FHDC1Q9C0D6 1143 aaPredicted RBP24.18■■□□□ 1.46
HDDC3-201ENST00000330334 MAP3K5Q99683 1374 aa24.17■■□□□ 1.46
HDDC3-201ENST00000330334 HSP90AB1P08238 724 aaKnown RBP24.17■■□□□ 1.46
HDDC3-201ENST00000330334 TMOD3Q9NYL9 352 aa24.17■■□□□ 1.46
HDDC3-201ENST00000330334 TOGARAM1Q9Y4F4 1720 aa24.16■■□□□ 1.46
HDDC3-201ENST00000330334 IL13P35225 146 aa24.16■■□□□ 1.46
HDDC3-201ENST00000330334 FLAD1Q8NFF5 587 aa24.16■■□□□ 1.46
HDDC3-201ENST00000330334 ERVV-2B6SEH9 535 aa24.15■■□□□ 1.46
HDDC3-201ENST00000330334 POLD1P28340 1107 aa24.15■■□□□ 1.46
HDDC3-201ENST00000330334 ITGB4P16144 1822 aa24.14■■□□□ 1.46
HDDC3-201ENST00000330334 COL23A1Q86Y22 540 aaPredicted RBP24.14■■□□□ 1.45
HDDC3-201ENST00000330334 DCAF5Q96JK2 942 aa24.14■■□□□ 1.45
HDDC3-201ENST00000330334 KDRP35968 1356 aa24.14■■□□□ 1.45
HDDC3-201ENST00000330334 NPC1L1Q9UHC9 1359 aa24.14■■□□□ 1.45
HDDC3-201ENST00000330334 LOC102724428A0A0B4J2F2 783 aa24.12■■□□□ 1.45
HDDC3-201ENST00000330334 MTHFSP49914 203 aa24.12■■□□□ 1.45
HDDC3-201ENST00000330334 SIK1P57059 783 aa24.12■■□□□ 1.45
HDDC3-201ENST00000330334 COL24A1Q17RW2 1714 aa24.11■■□□□ 1.45
HDDC3-201ENST00000330334 SULT6B1Q6IMI4 303 aa24.11■■□□□ 1.45
HDDC3-201ENST00000330334 AEBP1Q8IUX7 1158 aa24.11■■□□□ 1.45
HDDC3-201ENST00000330334 ASAP1Q9ULH1 1129 aa24.11■■□□□ 1.45
HDDC3-201ENST00000330334 ATG3Q9NT62 314 aa24.1■■□□□ 1.45
HDDC3-201ENST00000330334 C5P01031 1676 aa24.09■■□□□ 1.45
HDDC3-201ENST00000330334 ZNF530Q6P9A1 599 aaPredicted RBP24.09■■□□□ 1.45
HDDC3-201ENST00000330334 TUBGCP6Q96RT7 1819 aa24.09■■□□□ 1.45
HDDC3-201ENST00000330334 MSH5O43196 834 aa24.07■■□□□ 1.44
HDDC3-201ENST00000330334 CC2D1BQ5T0F9 858 aaKnown RBP24.07■■□□□ 1.44
HDDC3-201ENST00000330334 AK7Q96M32 723 aa24.07■■□□□ 1.44
HDDC3-201ENST00000330334 TAF1LQ8IZX4 1826 aa24.06■■□□□ 1.44
HDDC3-201ENST00000330334 C1orf141Q5JVX7 400 aa24.06■■□□□ 1.44
HDDC3-201ENST00000330334 UTRNP46939 3433 aa24.06■■□□□ 1.44
HDDC3-201ENST00000330334 YY1P25490 414 aa24.05■■□□□ 1.44
HDDC3-201ENST00000330334 C4BP0C0L5 1744 aa24.04■■□□□ 1.44
HDDC3-201ENST00000330334 SSFA2P28290 1259 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms