RNA–Protein interactions for RNA: ENST00000303531.11

PRKCB-201, Transcript of protein kinase C beta, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKCB, Length 7,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-201ENST00000303531 RAPGEF3O95398 923 aa16.46■□□□□ 0.23
PRKCB-201ENST00000303531 MPHOSPH8Q99549 860 aa16.46■□□□□ 0.23
PRKCB-201ENST00000303531 H0YHG0 523 aa16.46■□□□□ 0.23
PRKCB-201ENST00000303531 SKAP1Q86WV1 359 aa16.46■□□□□ 0.23
PRKCB-201ENST00000303531 KRT32Q14532 448 aa16.45■□□□□ 0.22
PRKCB-201ENST00000303531 EPRSP07814 1512 aaKnown RBP16.45■□□□□ 0.22
PRKCB-201ENST00000303531 C11orf95C9JLR9 678 aaPredicted RBP16.45■□□□□ 0.22
PRKCB-201ENST00000303531 RARSP54136 660 aaKnown RBP16.45■□□□□ 0.22
PRKCB-201ENST00000303531 ATP2B2Q01814 1243 aa16.45■□□□□ 0.22
PRKCB-201ENST00000303531 GNAT3A8MTJ3 354 aa16.45■□□□□ 0.22
PRKCB-201ENST00000303531 DCTN1Q14203 1278 aa16.45■□□□□ 0.22
PRKCB-201ENST00000303531 AXDND1Q5T1B0 1012 aaPredicted RBP16.45■□□□□ 0.22
PRKCB-201ENST00000303531 CDKL5O76039 1030 aa16.45■□□□□ 0.22
PRKCB-201ENST00000303531 STIM1Q13586 685 aa16.45■□□□□ 0.22
PRKCB-201ENST00000303531 CEP126Q9P2H0 1117 aa16.45■□□□□ 0.22
PRKCB-201ENST00000303531 CTNNA3Q9UI47 895 aa16.45■□□□□ 0.22
PRKCB-201ENST00000303531 CCDC66A2RUB6 948 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 MCM10Q7L590 875 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 FAM177A1Q8N128 213 aaPredicted RBP16.44■□□□□ 0.22
PRKCB-201ENST00000303531 ESPNB1AK53 854 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 CEP57L1Q8IYX8 460 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 SSH1Q8WYL5 1049 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 UQCRHLA0A096LP55 91 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 UQCRHP07919 91 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 CBFA2T2O43439 604 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 SMARCA5O60264 1052 aaPredicted RBP16.44■□□□□ 0.22
PRKCB-201ENST00000303531 DUSP27Q5VZP5 1158 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 CNKSR2Q8WXI2 1034 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.44■□□□□ 0.227e-7■■■■■ 84.3
PRKCB-201ENST00000303531 SYCE3A1L190 88 aa16.44■□□□□ 0.22
PRKCB-201ENST00000303531 NUDT16Q96DE0 195 aaKnown RBP16.44■□□□□ 0.22
PRKCB-201ENST00000303531 NKTRP30414 1462 aaKnown RBP16.43■□□□□ 0.22
PRKCB-201ENST00000303531 MX1P20591 662 aa16.43■□□□□ 0.22
PRKCB-201ENST00000303531 NOL7Q9UMY1 257 aaKnown RBP16.43■□□□□ 0.22
PRKCB-201ENST00000303531 SYCP1Q15431 976 aa16.43■□□□□ 0.22
PRKCB-201ENST00000303531 DEF6Q9H4E7 631 aa16.43■□□□□ 0.22
PRKCB-201ENST00000303531 TDO2P48775 406 aa16.42■□□□□ 0.22
PRKCB-201ENST00000303531 DDX11Q96FC9 970 aa16.42■□□□□ 0.22
PRKCB-201ENST00000303531 LEKR1Q6ZMV7 388 aa16.42■□□□□ 0.22
PRKCB-201ENST00000303531 UPF3BQ9BZI7 483 aaKnown RBP16.42■□□□□ 0.22
PRKCB-201ENST00000303531 RDXP35241 583 aaKnown RBP16.42■□□□□ 0.22
PRKCB-201ENST00000303531 FILIP1Q7Z7B0 1213 aa16.42■□□□□ 0.22
PRKCB-201ENST00000303531 CCDC61Q9Y6R9 512 aa16.42■□□□□ 0.22
PRKCB-201ENST00000303531 PCF11O94913 1555 aaKnown RBP16.41■□□□□ 0.22
PRKCB-201ENST00000303531 ZHX3Q9H4I2 956 aa16.41■□□□□ 0.22
PRKCB-201ENST00000303531 KIF1BPQ96EK5 621 aa16.41■□□□□ 0.22
PRKCB-201ENST00000303531 UBAC1Q9BSL1 405 aa16.41■□□□□ 0.22
PRKCB-201ENST00000303531 ALDH1L2Q3SY69 923 aa16.41■□□□□ 0.22
PRKCB-201ENST00000303531 TANGO6Q9C0B7 1094 aa16.41■□□□□ 0.22
PRKCB-201ENST00000303531 SOGA3Q5TF21 947 aa16.41■□□□□ 0.22
PRKCB-201ENST00000303531 SPINK5Q9NQ38 1064 aaPredicted RBP16.41■□□□□ 0.22
PRKCB-201ENST00000303531 MAP3K11Q16584 847 aa16.4■□□□□ 0.22
PRKCB-201ENST00000303531 TMEM132AQ24JP5 1023 aa16.4■□□□□ 0.22
PRKCB-201ENST00000303531 CCDC83Q8IWF9 413 aa16.4■□□□□ 0.22
PRKCB-201ENST00000303531 CCDC85AQ96PX6 553 aaPredicted RBP16.4■□□□□ 0.22
PRKCB-201ENST00000303531 XPCQ01831 940 aaPredicted RBP16.4■□□□□ 0.22
PRKCB-201ENST00000303531 CCDC141Q6ZP82 1450 aa16.4■□□□□ 0.22
PRKCB-201ENST00000303531 ARHGEF11O15085 1522 aa16.4■□□□□ 0.22
PRKCB-201ENST00000303531 FERMT3Q86UX7 667 aa16.4■□□□□ 0.22
PRKCB-201ENST00000303531 CAMK4Q16566 473 aa16.4■□□□□ 0.22
PRKCB-201ENST00000303531 CCDC181Q5TID7 509 aa16.39■□□□□ 0.21
PRKCB-201ENST00000303531 LUC7LQ9NQ29 371 aaKnown RBP16.39■□□□□ 0.21
PRKCB-201ENST00000303531 PRPF40BQ6NWY9 871 aaKnown RBP16.39■□□□□ 0.21
PRKCB-201ENST00000303531 GLRX3O76003 335 aaKnown RBP16.39■□□□□ 0.21
PRKCB-201ENST00000303531 PDIA4P13667 645 aaKnown RBP16.39■□□□□ 0.21
PRKCB-201ENST00000303531 PTPN23Q9H3S7 1636 aa16.39■□□□□ 0.21
PRKCB-201ENST00000303531 RAB11FIP3O75154 756 aa16.39■□□□□ 0.21
PRKCB-201ENST00000303531 IDH1O75874 414 aaKnown RBP16.39■□□□□ 0.21
PRKCB-201ENST00000303531 IMMTQ16891 758 aaKnown RBP16.39■□□□□ 0.21
PRKCB-201ENST00000303531 PRDM11Q9NQV5 511 aa16.39■□□□□ 0.21
PRKCB-201ENST00000303531 CAMSAP2Q08AD1 1489 aa16.38■□□□□ 0.21
PRKCB-201ENST00000303531 WAPLQ7Z5K2 1190 aa16.38■□□□□ 0.21
PRKCB-201ENST00000303531 RAI14Q9P0K7 980 aa16.38■□□□□ 0.21
PRKCB-201ENST00000303531 ABCC11Q96J66 1382 aa16.38■□□□□ 0.21
PRKCB-201ENST00000303531 TSPYL1Q9H0U9 437 aa16.38■□□□□ 0.21
PRKCB-201ENST00000303531 CCDC191Q8NCU4 936 aa16.37■□□□□ 0.21
PRKCB-201ENST00000303531 SMTNL1A8MU46 457 aa16.37■□□□□ 0.21
PRKCB-201ENST00000303531 LRP2BPQ9P2M1 347 aa16.37■□□□□ 0.21
PRKCB-201ENST00000303531 ZSCAN30Q86W11 494 aa16.37■□□□□ 0.21
PRKCB-201ENST00000303531 ANKLE2Q86XL3 938 aa16.36■□□□□ 0.21
PRKCB-201ENST00000303531 ERLIN1O75477 346 aa16.36■□□□□ 0.21
PRKCB-201ENST00000303531 WASF1Q92558 559 aa16.36■□□□□ 0.21
PRKCB-201ENST00000303531 AIDAQ96BJ3 306 aa16.36■□□□□ 0.21
PRKCB-201ENST00000303531 ERLIN2O94905 339 aa16.36■□□□□ 0.21
PRKCB-201ENST00000303531 ZC3H6P61129 1189 aaKnown RBP16.36■□□□□ 0.21
PRKCB-201ENST00000303531 LRPPRCP42704 1394 aaKnown RBP16.36■□□□□ 0.21
PRKCB-201ENST00000303531 DNMBPQ6XZF7 1577 aa16.36■□□□□ 0.21
PRKCB-201ENST00000303531 GOLGA6L10A6NI86 522 aa16.36■□□□□ 0.21
PRKCB-201ENST00000303531 PIBF1Q8WXW3 757 aa16.36■□□□□ 0.21
PRKCB-201ENST00000303531 TXLNBQ8N3L3 684 aa16.35■□□□□ 0.21
PRKCB-201ENST00000303531 BOLA2Q9H3K6 86 aa16.35■□□□□ 0.21
PRKCB-201ENST00000303531 SSBP05455 408 aaKnown RBP eCLIP16.35■□□□□ 0.21
PRKCB-201ENST00000303531 ABCC5O15440 1437 aa16.35■□□□□ 0.21
PRKCB-201ENST00000303531 F6X3S4 739 aa16.35■□□□□ 0.21
PRKCB-201ENST00000303531 NME9Q86XW9 330 aa16.35■□□□□ 0.21
PRKCB-201ENST00000303531 PDCL3Q9H2J4 239 aa16.35■□□□□ 0.21
PRKCB-201ENST00000303531 U3KPZ7 1027 aaPredicted RBP16.34■□□□□ 0.21
PRKCB-201ENST00000303531 CFAP100Q494V2 611 aa16.34■□□□□ 0.21
PRKCB-201ENST00000303531 TBC1D2Q9BYX2 928 aa16.34■□□□□ 0.21
PRKCB-201ENST00000303531 MAGI1Q96QZ7 1491 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms