RNA–Protein interactions for RNA: ENST00000298173.7

GTF2A1-201, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 2

Gene GTF2A1, Length 1,677 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-201ENST00000298173 PLCH1Q4KWH8 1693 aa32.14■■■□□ 2.74
GTF2A1-201ENST00000298173 CALD1Q05682 793 aaKnown RBP32.14■■■□□ 2.74
GTF2A1-201ENST00000298173 RAPGEF4Q8WZA2 1011 aa32.14■■■□□ 2.74
GTF2A1-201ENST00000298173 DCTN1Q14203 1278 aa32.13■■■□□ 2.73
GTF2A1-201ENST00000298173 GNAT3A8MTJ3 354 aa32.12■■■□□ 2.73
GTF2A1-201ENST00000298173 MYH16Q9H6N6 1097 aa32.12■■■□□ 2.73
GTF2A1-201ENST00000298173 MEGF6O75095 1541 aa32.12■■■□□ 2.73
GTF2A1-201ENST00000298173 CRB1P82279 1406 aa32.12■■■□□ 2.73
GTF2A1-201ENST00000298173 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.11■■■□□ 2.739e-7■■■■■ 42.6
GTF2A1-201ENST00000298173 ZNF853P0CG23 659 aa32.11■■■□□ 2.73
GTF2A1-201ENST00000298173 TATP17735 454 aaPredicted RBP32.11■■■□□ 2.73
GTF2A1-201ENST00000298173 MAP3K5Q99683 1374 aa32.1■■■□□ 2.73
GTF2A1-201ENST00000298173 MCM10Q7L590 875 aa32.1■■■□□ 2.73
GTF2A1-201ENST00000298173 SLIT2O94813 1529 aa32.09■■■□□ 2.73
GTF2A1-201ENST00000298173 NRAPQ86VF7 1730 aa32.09■■■□□ 2.73
GTF2A1-201ENST00000298173 NWD2Q9ULI1 1742 aa32.09■■■□□ 2.73
GTF2A1-201ENST00000298173 RTF1Q92541 710 aaKnown RBP32.08■■■□□ 2.73
GTF2A1-201ENST00000298173 SUPT16HQ9Y5B9 1047 aaKnown RBP32.08■■■□□ 2.73
GTF2A1-201ENST00000298173 IFT57Q9NWB7 429 aa32.08■■■□□ 2.73
GTF2A1-201ENST00000298173 AKAP4Q5JQC9 854 aa32.07■■■□□ 2.72
GTF2A1-201ENST00000298173 IL17REQ8NFR9 667 aa32.06■■■□□ 2.72
GTF2A1-201ENST00000298173 CFAP44Q96MT7 982 aa32.06■■■□□ 2.72
GTF2A1-201ENST00000298173 FANCIQ9NVI1 1328 aa32.06■■■□□ 2.72
GTF2A1-201ENST00000298173 PKD1L3Q7Z443 1732 aa32.06■■■□□ 2.72
GTF2A1-201ENST00000298173 GNAI1P63096 354 aa32.05■■■□□ 2.72
GTF2A1-201ENST00000298173 ZNF530Q6P9A1 599 aaPredicted RBP32.05■■■□□ 2.72
GTF2A1-201ENST00000298173 RCAN3Q9UKA8 241 aa32.05■■■□□ 2.72
GTF2A1-201ENST00000298173 OVOS2A0A0G2JMS6 1433 aa32.04■■■□□ 2.72
GTF2A1-201ENST00000298173 LRP6O75581 1613 aa32.04■■■□□ 2.72
GTF2A1-201ENST00000298173 PARP4Q9UKK3 1724 aaKnown RBP32.04■■■□□ 2.72
GTF2A1-201ENST00000298173 TSR2Q969E8 191 aaKnown RBP32.03■■■□□ 2.72
GTF2A1-201ENST00000298173 SPG7Q9UQ90 795 aa32.03■■■□□ 2.72
GTF2A1-201ENST00000298173 LRRC37A3O60309 1634 aa32.02■■■□□ 2.72
GTF2A1-201ENST00000298173 CEMIPQ8WUJ3 1361 aa32.02■■■□□ 2.72
GTF2A1-201ENST00000298173 RNF123Q5XPI4 1314 aa32.02■■■□□ 2.72
GTF2A1-201ENST00000298173 IL2RBP14784 551 aa32.02■■■□□ 2.72
GTF2A1-201ENST00000298173 CHL1O00533 1208 aa32■■■□□ 2.71
GTF2A1-201ENST00000298173 C1orf141Q5JVX7 400 aa31.99■■■□□ 2.71
GTF2A1-201ENST00000298173 FNBP4Q8N3X1 1017 aaPredicted RBP31.99■■■□□ 2.71
GTF2A1-201ENST00000298173 MBIPQ9NS73 344 aa31.99■■■□□ 2.71
GTF2A1-201ENST00000298173 LAS1LQ9Y4W2 734 aaKnown RBP31.99■■■□□ 2.71
GTF2A1-201ENST00000298173 ADAMTS7Q9UKP4 1686 aa31.98■■■□□ 2.71
GTF2A1-201ENST00000298173 VIRMAQ69YN4 1812 aaKnown RBP31.98■■■□□ 2.71
GTF2A1-201ENST00000298173 LGR6Q9HBX8 967 aa31.98■■■□□ 2.71
GTF2A1-201ENST00000298173 PHKG2P15735 406 aa31.96■■■□□ 2.71
GTF2A1-201ENST00000298173 NGLY1Q96IV0 654 aa31.96■■■□□ 2.71
GTF2A1-201ENST00000298173 USP35Q9P2H5 1018 aa31.96■■■□□ 2.71
GTF2A1-201ENST00000298173 BCL9LQ86UU0 1499 aa31.96■■■□□ 2.71
GTF2A1-201ENST00000298173 DISP2A7MBM2 1401 aa31.96■■■□□ 2.71
GTF2A1-201ENST00000298173 CYP27B1O15528 508 aa31.95■■■□□ 2.71
GTF2A1-201ENST00000298173 EXOSC9Q06265 439 aaKnown RBP31.95■■■□□ 2.71
GTF2A1-201ENST00000298173 C8orf37Q96NL8 207 aa31.95■■■□□ 2.71
GTF2A1-201ENST00000298173 UNC5CLQ8IV45 518 aa31.95■■■□□ 2.7
GTF2A1-201ENST00000298173 IFNL2Q8IZJ0 200 aa31.95■■■□□ 2.7
GTF2A1-201ENST00000298173 ZCRB1Q8TBF4 217 aaKnown RBP31.95■■■□□ 2.7
GTF2A1-201ENST00000298173 SPATA31A1Q5TZJ5 1347 aa31.94■■■□□ 2.7
GTF2A1-201ENST00000298173 RNMTO43148 476 aaKnown RBP31.94■■■□□ 2.7
GTF2A1-201ENST00000298173 CT47B1P0C2W7 299 aaPredicted RBP31.94■■■□□ 2.7
GTF2A1-201ENST00000298173 MPRIPQ6WCQ1 1025 aa31.94■■■□□ 2.7
GTF2A1-201ENST00000298173 BABAM1Q9NWV8 329 aa31.92■■■□□ 2.7
GTF2A1-201ENST00000298173 THRAP3Q9Y2W1 955 aaKnown RBP31.92■■■□□ 2.7
GTF2A1-201ENST00000298173 SHANK3Q9BYB0 1731 aa31.92■■■□□ 2.7
GTF2A1-201ENST00000298173 SPATA31A5Q5VU36 1347 aa31.92■■■□□ 2.7
GTF2A1-201ENST00000298173 SPATA31A7Q8IWB4 1347 aa31.92■■■□□ 2.7
GTF2A1-201ENST00000298173 GTF3C3Q9Y5Q9 886 aa31.92■■■□□ 2.7
GTF2A1-201ENST00000298173 SCN11AQ9UI33 1791 aa31.91■■■□□ 2.7
GTF2A1-201ENST00000298173 TAF7Q15545 349 aaPredicted RBP31.91■■■□□ 2.7
GTF2A1-201ENST00000298173 WNK3Q9BYP7 1800 aa31.9■■■□□ 2.7
GTF2A1-201ENST00000298173 PCDH11XQ9BZA7 1347 aa31.88■■■□□ 2.69
GTF2A1-201ENST00000298173 PCDH11YQ9BZA8 1340 aa31.88■■■□□ 2.69
GTF2A1-201ENST00000298173 KDM6AO15550 1401 aaPredicted RBP31.87■■■□□ 2.69
GTF2A1-201ENST00000298173 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.87■■■□□ 2.69
GTF2A1-201ENST00000298173 MIS18AQ9NYP9 233 aa31.87■■■□□ 2.69
GTF2A1-201ENST00000298173 HSP90AB1P08238 724 aaKnown RBP31.86■■■□□ 2.69
GTF2A1-201ENST00000298173 VPS72Q15906 364 aa31.86■■■□□ 2.69
GTF2A1-201ENST00000298173 RARSP54136 660 aaKnown RBP31.86■■■□□ 2.69
GTF2A1-201ENST00000298173 NKX1-1Q15270 411 aaPredicted RBP31.86■■■□□ 2.69
GTF2A1-201ENST00000298173 DCAF5Q96JK2 942 aa31.86■■■□□ 2.69
GTF2A1-201ENST00000298173 CDCA7Q9BWT1 371 aaPredicted RBP31.86■■■□□ 2.69
GTF2A1-201ENST00000298173 SIPA1L3O60292 1781 aaPredicted RBP31.86■■■□□ 2.69
GTF2A1-201ENST00000298173 TSPYL4Q9UJ04 414 aa31.85■■■□□ 2.69
GTF2A1-201ENST00000298173 BARGINQ6ZT62 677 aa31.84■■■□□ 2.69
GTF2A1-201ENST00000298173 VAMP4O75379 141 aa31.83■■■□□ 2.69
GTF2A1-201ENST00000298173 RRP1P56182 461 aaKnown RBP31.83■■■□□ 2.69
GTF2A1-201ENST00000298173 C8orf58Q8NAV2 365 aa31.83■■■□□ 2.69
GTF2A1-201ENST00000298173 USP21Q9UK80 565 aa31.83■■■□□ 2.69
GTF2A1-201ENST00000298173 TEFQ10587 303 aa31.83■■■□□ 2.69
GTF2A1-201ENST00000298173 TSPYL6Q8N831 410 aa31.83■■■□□ 2.69
GTF2A1-201ENST00000298173 MEX3CQ5U5Q3 659 aaKnown RBP31.82■■■□□ 2.68
GTF2A1-201ENST00000298173 BCAR3O75815 825 aa31.81■■■□□ 2.68
GTF2A1-201ENST00000298173 ZNF428Q96B54 188 aa31.8■■■□□ 2.68
GTF2A1-201ENST00000298173 KDM3BQ7LBC6 1761 aa31.8■■■□□ 2.68
GTF2A1-201ENST00000298173 DDX54Q8TDD1 881 aaKnown RBP31.79■■■□□ 2.68
GTF2A1-201ENST00000298173 SLC52A2Q9HAB3 445 aa31.79■■■□□ 2.68
GTF2A1-201ENST00000298173 MRC1P22897 1456 aa31.79■■■□□ 2.68
GTF2A1-201ENST00000298173 EXOC5O00471 708 aa31.78■■■□□ 2.68
GTF2A1-201ENST00000298173 NEFLP07196 543 aa31.78■■■□□ 2.68
GTF2A1-201ENST00000298173 TWISTNBQ3B726 338 aaPredicted RBP31.78■■■□□ 2.68
GTF2A1-201ENST00000298173 CCDC9Q9Y3X0 531 aaKnown RBP31.78■■■□□ 2.68
GTF2A1-201ENST00000298173 AFF2P51816 1311 aa31.76■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms