RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 CRB1P82279 1406 aa29.49■■■□□ 2.31
PTX3-201ENST00000295927 HTATSF1O43719 755 aaKnown RBP29.49■■■□□ 2.31
PTX3-201ENST00000295927 GNAT3A8MTJ3 354 aa29.47■■■□□ 2.31
PTX3-201ENST00000295927 MAP3K5Q99683 1374 aa29.46■■■□□ 2.31
PTX3-201ENST00000295927 CANXP27824 592 aaKnown RBP29.46■■■□□ 2.31
PTX3-201ENST00000295927 FRAT1Q92837 279 aaPredicted RBP29.46■■■□□ 2.31
PTX3-201ENST00000295927 CCDC136Q96JN2 1154 aa29.46■■■□□ 2.31
PTX3-201ENST00000295927 LRRC37A3O60309 1634 aa29.45■■■□□ 2.31
PTX3-201ENST00000295927 FAM208AQ9UK61 1670 aaKnown RBP29.45■■■□□ 2.3
PTX3-201ENST00000295927 CHL1O00533 1208 aa29.45■■■□□ 2.3
PTX3-201ENST00000295927 PELP1Q8IZL8 1130 aaKnown RBP29.44■■■□□ 2.3
PTX3-201ENST00000295927 SSH1Q8WYL5 1049 aa29.44■■■□□ 2.3
PTX3-201ENST00000295927 PDE3AQ14432 1141 aa29.43■■■□□ 2.3
PTX3-201ENST00000295927 SMC4Q9NTJ3 1288 aa29.43■■■□□ 2.3
PTX3-201ENST00000295927 HAP1P54257 671 aaPredicted RBP29.43■■■□□ 2.3
PTX3-201ENST00000295927 AHDC1Q5TGY3 1603 aaPredicted RBP29.42■■■□□ 2.3
PTX3-201ENST00000295927 TSPYL6Q8N831 410 aa29.41■■■□□ 2.3
PTX3-201ENST00000295927 ZNF428Q96B54 188 aa29.41■■■□□ 2.3
PTX3-201ENST00000295927 VAMP4O75379 141 aa29.41■■■□□ 2.3
PTX3-201ENST00000295927 PLEKHO1Q53GL0 409 aaPredicted RBP29.41■■■□□ 2.3
PTX3-201ENST00000295927 PRDM11Q9NQV5 511 aa29.41■■■□□ 2.3
PTX3-201ENST00000295927 NLRP2Q9NX02 1062 aa29.41■■■□□ 2.3
PTX3-201ENST00000295927 C8orf58Q8NAV2 365 aa29.4■■■□□ 2.3
PTX3-201ENST00000295927 CSB-PGBD3P0DP91 1061 aa29.39■■■□□ 2.3
PTX3-201ENST00000295927 ALDH1L2Q3SY69 923 aa29.39■■■□□ 2.3
PTX3-201ENST00000295927 IL17REQ8NFR9 667 aa29.39■■■□□ 2.3
PTX3-201ENST00000295927 AMOTQ4VCS5 1084 aa29.39■■■□□ 2.3
PTX3-201ENST00000295927 TWISTNBQ3B726 338 aaPredicted RBP29.38■■■□□ 2.29
PTX3-201ENST00000295927 ELL2O00472 640 aaPredicted RBP29.37■■■□□ 2.29
PTX3-201ENST00000295927 PANK1Q8TE04 598 aa29.37■■■□□ 2.29
PTX3-201ENST00000295927 ZNF530Q6P9A1 599 aaPredicted RBP29.36■■■□□ 2.29
PTX3-201ENST00000295927 MIS18AQ9NYP9 233 aa29.35■■■□□ 2.29
PTX3-201ENST00000295927 ZKSCAN2Q63HK3 967 aa29.35■■■□□ 2.29
PTX3-201ENST00000295927 TNNQ9UQP3 1299 aa29.35■■■□□ 2.29
PTX3-201ENST00000295927 AKAP4Q5JQC9 854 aa29.34■■■□□ 2.29
PTX3-201ENST00000295927 TSPYL4Q9UJ04 414 aa29.34■■■□□ 2.29
PTX3-201ENST00000295927 VIRMAQ69YN4 1812 aaKnown RBP29.33■■■□□ 2.29
PTX3-201ENST00000295927 RAPGEF4Q8WZA2 1011 aa29.32■■■□□ 2.28
PTX3-201ENST00000295927 CEMIPQ8WUJ3 1361 aa29.32■■■□□ 2.28
PTX3-201ENST00000295927 BRPF1P55201 1214 aaPredicted RBP29.32■■■□□ 2.28
PTX3-201ENST00000295927 KRT24Q2M2I5 525 aa29.32■■■□□ 2.28
PTX3-201ENST00000295927 NOB1Q9ULX3 412 aaKnown RBP29.32■■■□□ 2.28
PTX3-201ENST00000295927 KIF16BQ96L93 1317 aa29.31■■■□□ 2.28
PTX3-201ENST00000295927 RLBP1P12271 317 aa29.31■■■□□ 2.28
PTX3-201ENST00000295927 COG6Q9Y2V7 657 aa29.31■■■□□ 2.28
PTX3-201ENST00000295927 COL5A2P05997 1499 aaPredicted RBP29.3■■■□□ 2.28
PTX3-201ENST00000295927 COL22A1Q8NFW1 1626 aaPredicted RBP29.3■■■□□ 2.28
PTX3-201ENST00000295927 TAF7Q15545 349 aaPredicted RBP29.3■■■□□ 2.28
PTX3-201ENST00000295927 C1orf141Q5JVX7 400 aa29.3■■■□□ 2.28
PTX3-201ENST00000295927 CLUAP1Q96AJ1 413 aa29.3■■■□□ 2.28
PTX3-201ENST00000295927 LGR6Q9HBX8 967 aa29.3■■■□□ 2.28
PTX3-201ENST00000295927 PHLPP1O60346 1717 aa29.29■■■□□ 2.28
PTX3-201ENST00000295927 TATP17735 454 aaPredicted RBP29.29■■■□□ 2.28
PTX3-201ENST00000295927 MRPL50Q8N5N7 158 aaKnown RBP29.29■■■□□ 2.28
PTX3-201ENST00000295927 MEGF6O75095 1541 aa29.29■■■□□ 2.28
PTX3-201ENST00000295927 WDR17Q8IZU2 1322 aa29.29■■■□□ 2.28
PTX3-201ENST00000295927 MS4A1P11836 297 aa29.28■■■□□ 2.28
PTX3-201ENST00000295927 TRIM27P14373 513 aa29.28■■■□□ 2.28
PTX3-201ENST00000295927 ATF7IPQ6VMQ6 1270 aa29.28■■■□□ 2.28
PTX3-201ENST00000295927 BABAM1Q9NWV8 329 aa29.28■■■□□ 2.28
PTX3-201ENST00000295927 TOM1O60784 492 aa29.27■■■□□ 2.28
PTX3-201ENST00000295927 DZIP1LQ8IYY4 767 aaKnown RBP29.27■■■□□ 2.28
PTX3-201ENST00000295927 IPO8O15397 1037 aaKnown RBP29.26■■■□□ 2.27
PTX3-201ENST00000295927 MPRIPQ6WCQ1 1025 aa29.26■■■□□ 2.27
PTX3-201ENST00000295927 TCERG1O14776 1098 aaKnown RBP29.25■■■□□ 2.27
PTX3-201ENST00000295927 FTSJ3Q8IY81 847 aaKnown RBP29.25■■■□□ 2.27
PTX3-201ENST00000295927 COL16A1Q07092 1604 aaPredicted RBP29.25■■■□□ 2.27
PTX3-201ENST00000295927 PLEKHG2Q9H7P9 1386 aa29.25■■■□□ 2.27
PTX3-201ENST00000295927 TOM1L2Q6ZVM7 507 aa29.24■■■□□ 2.27
PTX3-201ENST00000295927 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.24■■■□□ 2.27
PTX3-201ENST00000295927 RNMTO43148 476 aaKnown RBP29.23■■■□□ 2.27
PTX3-201ENST00000295927 SPG7Q9UQ90 795 aa29.23■■■□□ 2.27
PTX3-201ENST00000295927 OVOS2A0A0G2JMS6 1433 aa29.23■■■□□ 2.27
PTX3-201ENST00000295927 PKD1L3Q7Z443 1732 aa29.23■■■□□ 2.27
PTX3-201ENST00000295927 PIP4K2BP78356 416 aa29.22■■■□□ 2.27
PTX3-201ENST00000295927 ADAMTS7Q9UKP4 1686 aa29.22■■■□□ 2.27
PTX3-201ENST00000295927 KDM3BQ7LBC6 1761 aa29.21■■■□□ 2.27
PTX3-201ENST00000295927 TEFQ10587 303 aa29.2■■■□□ 2.27
PTX3-201ENST00000295927 MVPQ14764 893 aaKnown RBP29.2■■■□□ 2.27
PTX3-201ENST00000295927 AEBP2Q6ZN18 517 aaPredicted RBP29.2■■■□□ 2.26
PTX3-201ENST00000295927 STRN4Q9NRL3 753 aa29.2■■■□□ 2.26
PTX3-201ENST00000295927 COL14A1Q05707 1796 aaKnown RBP29.19■■■□□ 2.26
PTX3-201ENST00000295927 PARP4Q9UKK3 1724 aaKnown RBP29.19■■■□□ 2.26
PTX3-201ENST00000295927 EVA1CP58658 441 aa29.19■■■□□ 2.26
PTX3-201ENST00000295927 ARHGAP45Q92619 1136 aa29.19■■■□□ 2.26
PTX3-201ENST00000295927 SIPA1L3O60292 1781 aaPredicted RBP29.18■■■□□ 2.26
PTX3-201ENST00000295927 CARD10Q9BWT7 1032 aa29.18■■■□□ 2.26
PTX3-201ENST00000295927 SCN11AQ9UI33 1791 aa29.17■■■□□ 2.26
PTX3-201ENST00000295927 PHKG2P15735 406 aa29.17■■■□□ 2.26
PTX3-201ENST00000295927 LARP1Q6PKG0 1096 aaKnown RBP29.17■■■□□ 2.26
PTX3-201ENST00000295927 AAMPQ13685 434 aa29.16■■■□□ 2.26
PTX3-201ENST00000295927 UBAP1LF5GYI3 381 aa29.15■■■□□ 2.26
PTX3-201ENST00000295927 IFNL2Q8IZJ0 200 aa29.15■■■□□ 2.26
PTX3-201ENST00000295927 BTG4Q9NY30 223 aa29.15■■■□□ 2.26
PTX3-201ENST00000295927 TMEM57Q8N5G2 664 aa29.14■■■□□ 2.26
PTX3-201ENST00000295927 BTBD11A6QL63 1104 aa29.13■■■□□ 2.25
PTX3-201ENST00000295927 SOS1Q07889 1333 aaPredicted RBP29.13■■■□□ 2.25
PTX3-201ENST00000295927 KDM2BQ8NHM5 1336 aa29.13■■■□□ 2.25
PTX3-201ENST00000295927 ITPRIPQ8IWB1 547 aa29.12■■■□□ 2.25
PTX3-201ENST00000295927 KDM6AO15550 1401 aaPredicted RBP29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms