RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CHMP4BQ9H444 224 aaKnown RBP25.24■■□□□ 1.63
VPS53-201ENST00000291074 RGS12O14924 1447 aa25.22■■□□□ 1.63
VPS53-201ENST00000291074 SLKQ9H2G2 1235 aaPredicted RBP25.22■■□□□ 1.63
VPS53-201ENST00000291074 FRAT2O75474 233 aaPredicted RBP25.21■■□□□ 1.63
VPS53-201ENST00000291074 GCC1Q96CN9 775 aa25.21■■□□□ 1.63
VPS53-201ENST00000291074 RBM33Q96EV2 1170 aaKnown RBP25.21■■□□□ 1.63
VPS53-201ENST00000291074 ANKARQ7Z5J8 1434 aa25.21■■□□□ 1.63
VPS53-201ENST00000291074 KDRP35968 1356 aa25.21■■□□□ 1.63
VPS53-201ENST00000291074 TBC1D2Q9BYX2 928 aa25.21■■□□□ 1.63
VPS53-201ENST00000291074 C22orf23Q9BZE7 217 aa25.21■■□□□ 1.63
VPS53-201ENST00000291074 IGSF1Q8N6C5 1336 aa25.21■■□□□ 1.63
VPS53-201ENST00000291074 KIAA0232Q92628 1395 aa25.21■■□□□ 1.63
VPS53-201ENST00000291074 RTF1Q92541 710 aaKnown RBP25.18■■□□□ 1.62
VPS53-201ENST00000291074 INTS3Q68E01 1043 aaKnown RBP25.17■■□□□ 1.62
VPS53-201ENST00000291074 ABTB2Q8N961 1025 aa25.17■■□□□ 1.62
VPS53-201ENST00000291074 TSPYL4Q9UJ04 414 aa25.17■■□□□ 1.62
VPS53-201ENST00000291074 HOXC9P31274 260 aa25.16■■□□□ 1.62
VPS53-201ENST00000291074 MSH6P52701 1360 aa25.15■■□□□ 1.62
VPS53-201ENST00000291074 C14orf37Q86TY3 774 aa25.15■■□□□ 1.62
VPS53-201ENST00000291074 LTV1Q96GA3 475 aaPredicted RBP25.15■■□□□ 1.62
VPS53-201ENST00000291074 HAP1P54257 671 aaPredicted RBP25.15■■□□□ 1.62
VPS53-201ENST00000291074 KIF24Q5T7B8 1368 aa25.14■■□□□ 1.62
VPS53-201ENST00000291074 CHD2O14647 1828 aaKnown RBP25.14■■□□□ 1.62
VPS53-201ENST00000291074 SLC4A2P04920 1241 aa25.13■■□□□ 1.61
VPS53-201ENST00000291074 BMP2KLQ5H9B9 411 aa25.13■■□□□ 1.61
VPS53-201ENST00000291074 NWD1Q149M9 1564 aa25.13■■□□□ 1.61
VPS53-201ENST00000291074 SPRYD3Q8NCJ5 442 aa25.12■■□□□ 1.61
VPS53-201ENST00000291074 GAS2L2Q8NHY3 880 aa25.12■■□□□ 1.61
VPS53-201ENST00000291074 ATP10DQ9P241 1426 aa25.12■■□□□ 1.61
VPS53-201ENST00000291074 G2E3Q7L622 706 aa25.11■■□□□ 1.61
VPS53-201ENST00000291074 ANTXR1Q9H6X2 564 aa25.11■■□□□ 1.61
VPS53-201ENST00000291074 USP54Q70EL1 1684 aa25.11■■□□□ 1.61
VPS53-201ENST00000291074 PTPRCP08575 1304 aa25.1■■□□□ 1.61
VPS53-201ENST00000291074 MEIS3Q99687 375 aa25.1■■□□□ 1.61
VPS53-201ENST00000291074 PHF8Q9UPP1 1060 aa25.1■■□□□ 1.61
VPS53-201ENST00000291074 SETD1BQ9UPS6 1966 aaKnown RBP25.09■■□□□ 1.61
VPS53-201ENST00000291074 LTN1O94822 1766 aa25.09■■□□□ 1.61
VPS53-201ENST00000291074 ANKLE2Q86XL3 938 aa25.09■■□□□ 1.61
VPS53-201ENST00000291074 USHBP1Q8N6Y0 703 aa25.09■■□□□ 1.61
VPS53-201ENST00000291074 LRRC37A3O60309 1634 aa25.09■■□□□ 1.61
VPS53-201ENST00000291074 F6X3S4 739 aa25.08■■□□□ 1.6
VPS53-201ENST00000291074 DCTPP1Q9H773 170 aa25.08■■□□□ 1.6
VPS53-201ENST00000291074 RTL1A6NKG5 1358 aa25.07■■□□□ 1.6
VPS53-201ENST00000291074 ANKRD44Q8N8A2 993 aa25.07■■□□□ 1.6
VPS53-201ENST00000291074 CEP85Q6P2H3 762 aa25.07■■□□□ 1.6
VPS53-201ENST00000291074 GNAT3A8MTJ3 354 aa25.06■■□□□ 1.6
VPS53-201ENST00000291074 GSE1Q14687 1217 aa25.06■■□□□ 1.6
VPS53-201ENST00000291074 SLC4A10Q6U841 1118 aa25.06■■□□□ 1.6
VPS53-201ENST00000291074 TBC1D9Q6ZT07 1266 aa25.04■■□□□ 1.6
VPS53-201ENST00000291074 C16orf71Q8IYS4 520 aaPredicted RBP25.04■■□□□ 1.6
VPS53-201ENST00000291074 ZNF142P52746 1687 aaPredicted RBP25.04■■□□□ 1.6
VPS53-201ENST00000291074 NECTIN2Q92692 538 aa25.04■■□□□ 1.6
VPS53-201ENST00000291074 APBB1O00213 710 aa25.03■■□□□ 1.6
VPS53-201ENST00000291074 GSPT1P15170 499 aaKnown RBP25.03■■□□□ 1.6
VPS53-201ENST00000291074 RBM25P49756 843 aaKnown RBP25.03■■□□□ 1.6
VPS53-201ENST00000291074 PLEKHM2Q8IWE5 1019 aa25.03■■□□□ 1.6
VPS53-201ENST00000291074 IL17REQ8NFR9 667 aa25.03■■□□□ 1.6
VPS53-201ENST00000291074 FAM208AQ9UK61 1670 aaKnown RBP25.02■■□□□ 1.6
VPS53-201ENST00000291074 MAP3K5Q99683 1374 aa25.02■■□□□ 1.6
VPS53-201ENST00000291074 RPAP2Q8IXW5 612 aaPredicted RBP25.02■■□□□ 1.6
VPS53-201ENST00000291074 ESCO1Q5FWF5 840 aa25.01■■□□□ 1.59
VPS53-201ENST00000291074 OTUD7AQ8TE49 926 aaPredicted RBP25.01■■□□□ 1.59
VPS53-201ENST00000291074 ZBTB7CA1YPR0 619 aa25.01■■□□□ 1.59
VPS53-201ENST00000291074 HTATSF1O43719 755 aaKnown RBP25.01■■□□□ 1.59
VPS53-201ENST00000291074 ANO8Q9HCE9 1232 aaPredicted RBP25■■□□□ 1.59
VPS53-201ENST00000291074 SMARCA5O60264 1052 aaPredicted RBP25■■□□□ 1.59
VPS53-201ENST00000291074 PLEKHG5O94827 1062 aa24.99■■□□□ 1.59
VPS53-201ENST00000291074 NFAT5O94916 1531 aa24.99■■□□□ 1.59
VPS53-201ENST00000291074 ADGRL3Q9HAR2 1447 aa24.99■■□□□ 1.59
VPS53-201ENST00000291074 STK31Q9BXU1 1019 aa24.99■■□□□ 1.59
VPS53-201ENST00000291074 RGPD2P0DJD1 1756 aa24.98■■□□□ 1.59
VPS53-201ENST00000291074 HSCBQ8IWL3 235 aa24.98■■□□□ 1.59
VPS53-201ENST00000291074 PSME1Q06323 249 aa24.97■■□□□ 1.59
VPS53-201ENST00000291074 CDC45O75419 566 aa24.96■■□□□ 1.59
VPS53-201ENST00000291074 XPCQ01831 940 aaPredicted RBP24.96■■□□□ 1.59
VPS53-201ENST00000291074 FLIIQ13045 1269 aa24.96■■□□□ 1.59
VPS53-201ENST00000291074 TTC22Q5TAA0 569 aa24.96■■□□□ 1.59
VPS53-201ENST00000291074 NBPF6Q5VWK0 638 aa24.96■■□□□ 1.59
VPS53-201ENST00000291074 IP6K1Q92551 441 aa24.96■■□□□ 1.59
VPS53-201ENST00000291074 NBPF4Q96M43 638 aa24.96■■□□□ 1.59
VPS53-201ENST00000291074 KIF2CQ99661 725 aa24.96■■□□□ 1.59
VPS53-201ENST00000291074 CCT4P50991 539 aaKnown RBP24.95■■□□□ 1.58
VPS53-201ENST00000291074 FKBP5Q13451 457 aaPredicted RBP24.95■■□□□ 1.58
VPS53-201ENST00000291074 ADAMTSL3P82987 1691 aa24.94■■□□□ 1.58
VPS53-201ENST00000291074 TAF7Q15545 349 aaPredicted RBP24.94■■□□□ 1.58
VPS53-201ENST00000291074 CCDC30Q5VVM6 783 aa24.94■■□□□ 1.58
VPS53-201ENST00000291074 ORAI2Q96SN7 254 aa24.92■■□□□ 1.58
VPS53-201ENST00000291074 LRRC59Q96AG4 307 aaKnown RBP24.91■■□□□ 1.58
VPS53-201ENST00000291074 CACNA1FO60840 1977 aa24.91■■□□□ 1.58
VPS53-201ENST00000291074 NPHP4O75161 1426 aaPredicted RBP24.9■■□□□ 1.58
VPS53-201ENST00000291074 RBM42Q9BTD8 480 aaKnown RBP24.9■■□□□ 1.58
VPS53-201ENST00000291074 CD2BP2O95400 341 aaKnown RBP24.89■■□□□ 1.58
VPS53-201ENST00000291074 SNX21Q969T3 373 aa24.89■■□□□ 1.58
VPS53-201ENST00000291074 LGR6Q9HBX8 967 aa24.89■■□□□ 1.58
VPS53-201ENST00000291074 HMMRO75330 724 aa24.88■■□□□ 1.57
VPS53-201ENST00000291074 GNAI2P04899 355 aa24.88■■□□□ 1.57
VPS53-201ENST00000291074 CHMP5Q9NZZ3 219 aa24.88■■□□□ 1.57
VPS53-201ENST00000291074 NCOA3Q9Y6Q9 1424 aa24.88■■□□□ 1.57
VPS53-201ENST00000291074 EXOC6BQ9Y2D4 811 aa24.87■■□□□ 1.57
VPS53-201ENST00000291074 SDSP20132 328 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms