RNA–Protein interactions for RNA: ENST00000262570.9

CHCHD3-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD3, Length 1,598 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-201ENST00000262570 WDR43Q15061 677 aaKnown RBP eCLIP22.16■■□□□ 1.14
CHCHD3-201ENST00000262570 PLEKHG2Q9H7P9 1386 aa22.16■■□□□ 1.14
CHCHD3-201ENST00000262570 EXOC5O00471 708 aa22.16■■□□□ 1.14
CHCHD3-201ENST00000262570 RGS12O14924 1447 aa22.16■■□□□ 1.14
CHCHD3-201ENST00000262570 DDB1Q16531 1140 aa22.16■■□□□ 1.14
CHCHD3-201ENST00000262570 ADAMTS8Q9UP79 889 aa22.15■■□□□ 1.14
CHCHD3-201ENST00000262570 WNK3Q9BYP7 1800 aa22.15■■□□□ 1.14
CHCHD3-201ENST00000262570 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.14■■□□□ 1.137e-7■■■□□ 17.9
CHCHD3-201ENST00000262570 PARP4Q9UKK3 1724 aaKnown RBP22.13■■□□□ 1.13
CHCHD3-201ENST00000262570 PRKAR2BP31323 418 aa22.13■■□□□ 1.13
CHCHD3-201ENST00000262570 ZCRB1Q8TBF4 217 aaKnown RBP22.13■■□□□ 1.13
CHCHD3-201ENST00000262570 TNS2Q63HR2 1409 aa22.11■■□□□ 1.13
CHCHD3-201ENST00000262570 LRRC37A3O60309 1634 aa22.11■■□□□ 1.13
CHCHD3-201ENST00000262570 AMOTQ4VCS5 1084 aa22.11■■□□□ 1.13
CHCHD3-201ENST00000262570 PLEKHF1Q96S99 279 aa22.11■■□□□ 1.13
CHCHD3-201ENST00000262570 PDE3BQ13370 1112 aa22.1■■□□□ 1.13
CHCHD3-201ENST00000262570 PLEKHO1Q53GL0 409 aaPredicted RBP22.1■■□□□ 1.13
CHCHD3-201ENST00000262570 PNNQ9H307 717 aaKnown RBP22.1■■□□□ 1.13
CHCHD3-201ENST00000262570 SPG7Q9UQ90 795 aa22.1■■□□□ 1.13
CHCHD3-201ENST00000262570 PHACTR3Q96KR7 559 aa22.09■■□□□ 1.13
CHCHD3-201ENST00000262570 KRT27Q7Z3Y8 459 aa22.08■■□□□ 1.13
CHCHD3-201ENST00000262570 MARCH10Q8NA82 808 aaPredicted RBP22.08■■□□□ 1.12
CHCHD3-201ENST00000262570 DDX54Q8TDD1 881 aaKnown RBP22.08■■□□□ 1.12
CHCHD3-201ENST00000262570 PCDH11XQ9BZA7 1347 aa22.07■■□□□ 1.12
CHCHD3-201ENST00000262570 PCDH11YQ9BZA8 1340 aa22.07■■□□□ 1.12
CHCHD3-201ENST00000262570 CYP27B1O15528 508 aa22.07■■□□□ 1.12
CHCHD3-201ENST00000262570 MTHFSDQ2M296 383 aaKnown RBP22.07■■□□□ 1.12
CHCHD3-201ENST00000262570 PKD1L3Q7Z443 1732 aa22.07■■□□□ 1.12
CHCHD3-201ENST00000262570 FAM9BQ8IZU0 186 aa22.05■■□□□ 1.12
CHCHD3-201ENST00000262570 BRWD3Q6RI45 1802 aa22.05■■□□□ 1.12
CHCHD3-201ENST00000262570 NEFMP07197 916 aa22.04■■□□□ 1.12
CHCHD3-201ENST00000262570 ZNF530Q6P9A1 599 aaPredicted RBP22.04■■□□□ 1.12
CHCHD3-201ENST00000262570 RUNDC1Q96C34 613 aa22.04■■□□□ 1.12
CHCHD3-201ENST00000262570 PHKG2P15735 406 aa22.04■■□□□ 1.12
CHCHD3-201ENST00000262570 CCDC146Q8IYE0 955 aa22.04■■□□□ 1.12
CHCHD3-201ENST00000262570 IFNL2Q8IZJ0 200 aa22.04■■□□□ 1.12
CHCHD3-201ENST00000262570 SHANK3Q9BYB0 1731 aa22.03■■□□□ 1.12
CHCHD3-201ENST00000262570 FAM182BQ5T319 152 aa22.03■■□□□ 1.12
CHCHD3-201ENST00000262570 GAS2L2Q8NHY3 880 aa22.03■■□□□ 1.12
CHCHD3-201ENST00000262570 MAPK8IP3Q9UPT6 1336 aa22.02■■□□□ 1.12
CHCHD3-201ENST00000262570 EP400Q96L91 3159 aa22.02■■□□□ 1.12
CHCHD3-201ENST00000262570 NKX1-1Q15270 411 aaPredicted RBP22.01■■□□□ 1.11
CHCHD3-201ENST00000262570 AKAP4Q5JQC9 854 aa22■■□□□ 1.11
CHCHD3-201ENST00000262570 C1orf141Q5JVX7 400 aa22■■□□□ 1.11
CHCHD3-201ENST00000262570 ILDR2Q71H61 639 aa22■■□□□ 1.11
CHCHD3-201ENST00000262570 BCL9O00512 1426 aa21.99■■□□□ 1.11
CHCHD3-201ENST00000262570 FAM196AQ6ZSG2 479 aa21.99■■□□□ 1.11
CHCHD3-201ENST00000262570 NFE2L2Q16236 605 aa21.98■■□□□ 1.11
CHCHD3-201ENST00000262570 HSP90AB1P08238 724 aaKnown RBP21.97■■□□□ 1.11
CHCHD3-201ENST00000262570 GNAT3A8MTJ3 354 aa21.96■■□□□ 1.11
CHCHD3-201ENST00000262570 TMPOP42166 694 aaKnown RBP21.96■■□□□ 1.11
CHCHD3-201ENST00000262570 DCAF5Q96JK2 942 aa21.96■■□□□ 1.11
CHCHD3-201ENST00000262570 APAF1O14727 1248 aa21.95■■□□□ 1.11
CHCHD3-201ENST00000262570 MAP3K5Q99683 1374 aa21.95■■□□□ 1.1
CHCHD3-201ENST00000262570 MPRIPQ6WCQ1 1025 aa21.95■■□□□ 1.1
CHCHD3-201ENST00000262570 KDM6AO15550 1401 aaPredicted RBP21.93■■□□□ 1.1
CHCHD3-201ENST00000262570 RIPK4P57078 832 aa21.93■■□□□ 1.1
CHCHD3-201ENST00000262570 LGR6Q9HBX8 967 aa21.93■■□□□ 1.1
CHCHD3-201ENST00000262570 RRP7AQ9Y3A4 280 aaKnown RBP21.93■■□□□ 1.1
CHCHD3-201ENST00000262570 HTATSF1O43719 755 aaKnown RBP21.92■■□□□ 1.1
CHCHD3-201ENST00000262570 RNMTO43148 476 aaKnown RBP21.91■■□□□ 1.1
CHCHD3-201ENST00000262570 NEUROD2Q15784 382 aa21.91■■□□□ 1.1
CHCHD3-201ENST00000262570 IL17REQ8NFR9 667 aa21.91■■□□□ 1.1
CHCHD3-201ENST00000262570 ACSBG1Q96GR2 724 aa21.91■■□□□ 1.1
CHCHD3-201ENST00000262570 ERVV-2B6SEH9 535 aa21.9■■□□□ 1.1
CHCHD3-201ENST00000262570 PRIM1P49642 420 aaKnown RBP21.9■■□□□ 1.1
CHCHD3-201ENST00000262570 RTF1Q92541 710 aaKnown RBP21.9■■□□□ 1.1
CHCHD3-201ENST00000262570 KCNQ2O43526 872 aa21.89■■□□□ 1.09
CHCHD3-201ENST00000262570 DCTN1Q14203 1278 aa21.88■■□□□ 1.09
CHCHD3-201ENST00000262570 MCM10Q7L590 875 aa21.88■■□□□ 1.09
CHCHD3-201ENST00000262570 CEMIPQ8WUJ3 1361 aa21.88■■□□□ 1.09
CHCHD3-201ENST00000262570 TRIM35Q9UPQ4 493 aa21.88■■□□□ 1.09
CHCHD3-201ENST00000262570 ADAMTS7Q9UKP4 1686 aa21.88■■□□□ 1.09
CHCHD3-201ENST00000262570 TRIM37O94972 964 aa21.87■■□□□ 1.09
CHCHD3-201ENST00000262570 LMOD3Q0VAK6 560 aa21.87■■□□□ 1.09
CHCHD3-201ENST00000262570 NCBP3Q53F19 620 aaKnown RBP21.87■■□□□ 1.09
CHCHD3-201ENST00000262570 PTF1AQ7RTS3 328 aa21.87■■□□□ 1.09
CHCHD3-201ENST00000262570 BCL11BQ9C0K0 894 aaPredicted RBP21.87■■□□□ 1.09
CHCHD3-201ENST00000262570 SENP3-EIF4A1A0A087X0R7 540 aa21.87■■□□□ 1.09
CHCHD3-201ENST00000262570 SYTL4Q96C24 671 aaPredicted RBP21.87■■□□□ 1.09
CHCHD3-201ENST00000262570 TOGARAM1Q9Y4F4 1720 aa21.86■■□□□ 1.09
CHCHD3-201ENST00000262570 DLG5Q8TDM6 1919 aa21.86■■□□□ 1.09
CHCHD3-201ENST00000262570 SLC52A2Q9HAB3 445 aa21.86■■□□□ 1.09
CHCHD3-201ENST00000262570 DOT1LQ8TEK3 1739 aa21.85■■□□□ 1.09
CHCHD3-201ENST00000262570 CABP4P57796 275 aa21.85■■□□□ 1.09
CHCHD3-201ENST00000262570 NFATC2IPQ8NCF5 419 aa21.85■■□□□ 1.09
CHCHD3-201ENST00000262570 SBF2Q86WG5 1849 aa21.85■■□□□ 1.09
CHCHD3-201ENST00000262570 SCN11AQ9UI33 1791 aa21.85■■□□□ 1.09
CHCHD3-201ENST00000262570 CCDC27Q2M243 656 aa21.84■■□□□ 1.09
CHCHD3-201ENST00000262570 PIGBQ92521 554 aa21.84■■□□□ 1.09
CHCHD3-201ENST00000262570 TMOD3Q9NYL9 352 aa21.84■■□□□ 1.09
CHCHD3-201ENST00000262570 KAT6BQ8WYB5 2073 aa21.84■■□□□ 1.09
CHCHD3-201ENST00000262570 NGEFQ8N5V2 710 aa21.83■■□□□ 1.09
CHCHD3-201ENST00000262570 THUMPD2Q9BTF0 503 aaKnown RBP21.83■■□□□ 1.09
CHCHD3-201ENST00000262570 NHSQ6T4R5 1651 aa21.83■■□□□ 1.09
CHCHD3-201ENST00000262570 MRC1P22897 1456 aa21.83■■□□□ 1.08
CHCHD3-201ENST00000262570 TEFQ10587 303 aa21.82■■□□□ 1.08
CHCHD3-201ENST00000262570 CCDC125Q86Z20 511 aa21.81■■□□□ 1.08
CHCHD3-201ENST00000262570 SALL2Q9Y467 1007 aaPredicted RBP21.81■■□□□ 1.08
CHCHD3-201ENST00000262570 WWC1Q8IX03 1113 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms