RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 SIL1Q9H173 461 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 CCDC73Q6ZRK6 1079 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 CWC27Q6UX04 472 aaKnown RBP5.53□□□□□ -1.52
VPS13C-201ENST00000249837 MAGI2Q86UL8 1455 aa5.53□□□□□ -1.52
VPS13C-201ENST00000249837 AEBP1Q8IUX7 1158 aa5.52□□□□□ -1.52
VPS13C-201ENST00000249837 CYP46A1Q9Y6A2 500 aa5.52□□□□□ -1.52
VPS13C-201ENST00000249837 NLRP2Q9NX02 1062 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 KRT85P78386 507 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 PKNOX2Q96KN3 472 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 ZNF830Q96NB3 372 aaPredicted RBP5.52□□□□□ -1.53
VPS13C-201ENST00000249837 FANCAO15360 1455 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 ANXA1P04083 346 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 CCDC83Q8IWF9 413 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 TRMT2AQ8IZ69 625 aaKnown RBP5.52□□□□□ -1.53
VPS13C-201ENST00000249837 DDX11Q96FC9 970 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 KIF3AQ9Y496 699 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 MX1P20591 662 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 PDCP20941 246 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 LARP1BQ659C4 914 aaKnown RBP5.52□□□□□ -1.53
VPS13C-201ENST00000249837 SNX21Q969T3 373 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 TNMDQ9H2S6 317 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 SPG7Q9UQ90 795 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 PLCH2O75038 1416 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 ATP2B1P20020 1258 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 PRIM1P49642 420 aaKnown RBP5.52□□□□□ -1.53
VPS13C-201ENST00000249837 BLOC1S2Q6QNY1 142 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 ANKRD44Q8N8A2 993 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 TFIP11Q9UBB9 837 aaKnown RBP5.52□□□□□ -1.53
VPS13C-201ENST00000249837 AACSQ86V21 672 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 ZGPATQ8N5A5 531 aaKnown RBP5.52□□□□□ -1.53
VPS13C-201ENST00000249837 TRIM35Q9UPQ4 493 aa5.52□□□□□ -1.53
VPS13C-201ENST00000249837 TARBP1Q13395 1621 aaKnown RBP5.52□□□□□ -1.53
VPS13C-201ENST00000249837 WASLO00401 505 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-201ENST00000249837 EIF4G3O43432 1585 aaKnown RBP5.51□□□□□ -1.53
VPS13C-201ENST00000249837 DENND4BO75064 1496 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-201ENST00000249837 WASHC4Q2M389 1173 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 STK11IPQ8N1F8 1099 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 CPLX1O14810 134 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 HOMER1Q86YM7 354 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 PLEKHM2Q8IWE5 1019 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 DTNBO60941 627 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 CDC42BPAQ5VT25 1732 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 CD109Q6YHK3 1445 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 KDM5AP29375 1690 aaKnown RBP5.51□□□□□ -1.53
VPS13C-201ENST00000249837 LETM1O95202 739 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-201ENST00000249837 RAB3GAP1Q15042 981 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 TTC22Q5TAA0 569 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 PSMA5P28066 241 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 KLHL40Q2TBA0 621 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 CCDC183Q5T5S1 534 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 PRPF40BQ6NWY9 871 aaKnown RBP5.51□□□□□ -1.53
VPS13C-201ENST00000249837 PDILTQ8N807 584 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 KINO60870 393 aaKnown RBP5.51□□□□□ -1.53
VPS13C-201ENST00000249837 ZSCAN23Q3MJ62 389 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 HSP90AB2PQ58FF8 381 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 NECAB1Q8N987 351 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 ZNF692Q9BU19 519 aaPredicted RBP5.51□□□□□ -1.53
VPS13C-201ENST00000249837 ABCC10Q5T3U5 1492 aa5.51□□□□□ -1.53
VPS13C-201ENST00000249837 DNAJC2Q99543 621 aaKnown RBP5.5□□□□□ -1.53
VPS13C-201ENST00000249837 POLKQ9UBT6 870 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 TAF7Q15545 349 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-201ENST00000249837 JARID2Q92833 1246 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-201ENST00000249837 CASTP20810 708 aaKnown RBP5.5□□□□□ -1.53
VPS13C-201ENST00000249837 FILIP1Q7Z7B0 1213 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 TMX3Q96JJ7 454 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 USP25Q9UHP3 1055 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 SMC2O95347 1197 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 MAP3K11Q16584 847 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 PLEKHO1Q53GL0 409 aaPredicted RBP5.5□□□□□ -1.53
VPS13C-201ENST00000249837 TTC5Q8N0Z6 440 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 NSD2O96028 1365 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 CCDC192P0DO97 292 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 CLCN1P35523 988 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 ERC1Q8IUD2 1116 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 CHAMP1Q96JM3 812 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 BOLA2Q9H3K6 86 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 TPM3P06753 285 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 CPA1P15085 419 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 PDE1AP54750 535 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 STK38Q15208 465 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 G2E3Q7L622 706 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 RASSF8Q8NHQ8 419 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 MYL6BP14649 208 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 KIF1BO60333 1816 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 ANKRD36BQ8N2N9 1353 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 NFXL1Q6ZNB6 911 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 ZNF521Q96K83 1311 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 MAST1Q9Y2H9 1570 aa5.5□□□□□ -1.53
VPS13C-201ENST00000249837 PPP1R42Q7Z4L9 355 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 CPLX2Q6PUV4 134 aaKnown RBP5.49□□□□□ -1.53
VPS13C-201ENST00000249837 USP26Q9BXU7 913 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 RBSNQ9H1K0 784 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 NUP62CLQ9H1M0 184 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 MYO5CQ9NQX4 1742 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 KDM5DQ9BY66 1539 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 MBD5Q9P267 1494 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 NCKAP5LQ9HCH0 1330 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 PPFIA3O75145 1194 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 ARHGAP45Q92619 1136 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 LIMCH1Q9UPQ0 1083 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms