RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 PLA2G4AP47712 749 aa15.58■□□□□ 0.08
MSH2-201ENST00000233146 TOMM22Q9NS69 142 aa15.58■□□□□ 0.08
MSH2-201ENST00000233146 ERBB3P21860 1342 aa15.58■□□□□ 0.08
MSH2-201ENST00000233146 H2AFXP16104 143 aaPredicted RBP15.58■□□□□ 0.08
MSH2-201ENST00000233146 GRIPAP1Q4V328 841 aa15.58■□□□□ 0.08
MSH2-201ENST00000233146 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.58■□□□□ 0.08
MSH2-201ENST00000233146 PTPRGP23470 1445 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 CT47B1P0C2W7 299 aaPredicted RBP15.57■□□□□ 0.08
MSH2-201ENST00000233146 ANKRD45Q5TZF3 282 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 CEP135Q66GS9 1140 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 ATF7IPQ6VMQ6 1270 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 SRLQ86TD4 932 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 GPATCH11Q8N954 259 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 CEP120Q8N960 986 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.57■□□□□ 0.08
MSH2-201ENST00000233146 RRP7AQ9Y3A4 280 aaKnown RBP15.57■□□□□ 0.08
MSH2-201ENST00000233146 V9GYY5 206 aaPredicted RBP15.57■□□□□ 0.08
MSH2-201ENST00000233146 EGFL6Q8IUX8 553 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 CCDC191Q8NCU4 936 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 CNKSR2Q8WXI2 1034 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 DONSONQ9NYP3 566 aa15.57■□□□□ 0.08
MSH2-201ENST00000233146 ZSCAN26Q16670 478 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 CCDC27Q2M243 656 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 RNF20Q5VTR2 975 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 GOLGA6L1Q8N7Z2 621 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 PLPPR3Q6T4P5 718 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 RUNDC1Q96C34 613 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 CFAP44Q96MT7 982 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 LRRFIP2Q9Y608 721 aaKnown RBP15.56■□□□□ 0.08
MSH2-201ENST00000233146 ATP10AO60312 1499 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 A0A1B0GUL7 405 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 LRMPQ12912 555 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 TCP11L2Q8N4U5 519 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 TMEM57Q8N5G2 664 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 TMEM87AQ8NBN3 555 aa15.56■□□□□ 0.08
MSH2-201ENST00000233146 ATP2B1P20020 1258 aa15.55■□□□□ 0.08
MSH2-201ENST00000233146 GCC1Q96CN9 775 aa15.55■□□□□ 0.08
MSH2-201ENST00000233146 GDPD2Q9HCC8 539 aa15.55■□□□□ 0.08
MSH2-201ENST00000233146 CWC15Q9P013 229 aaKnown RBP15.55■□□□□ 0.08
MSH2-201ENST00000233146 POLR3AO14802 1390 aaPredicted RBP15.55■□□□□ 0.08
MSH2-201ENST00000233146 ABCA10Q8WWZ4 1543 aa15.55■□□□□ 0.08
MSH2-201ENST00000233146 SATB1Q01826 763 aa15.55■□□□□ 0.08
MSH2-201ENST00000233146 CROCC2H7BZ55 1655 aa15.55■□□□□ 0.08
MSH2-201ENST00000233146 PNMA6AP0CW24 399 aaPredicted RBP15.55■□□□□ 0.08
MSH2-201ENST00000233146 HSP90B1P14625 803 aaKnown RBP15.55■□□□□ 0.08
MSH2-201ENST00000233146 TPD52L1Q16890 204 aaPredicted RBP15.55■□□□□ 0.08
MSH2-201ENST00000233146 DRC1Q96MC2 740 aa15.55■□□□□ 0.08
MSH2-201ENST00000233146 TPM4P67936 248 aa15.54■□□□□ 0.08
MSH2-201ENST00000233146 CCDC186Q7Z3E2 898 aa15.54■□□□□ 0.08
MSH2-201ENST00000233146 RRP15Q9Y3B9 282 aaKnown RBP15.54■□□□□ 0.08
MSH2-201ENST00000233146 EIF2AK4Q9P2K8 1649 aaKnown RBP15.54■□□□□ 0.08
MSH2-201ENST00000233146 TULP1O00294 542 aaPredicted RBP15.54■□□□□ 0.08
MSH2-201ENST00000233146 U2SURPO15042 1029 aaKnown RBP15.54■□□□□ 0.08
MSH2-201ENST00000233146 A2MP01023 1474 aa15.54■□□□□ 0.08
MSH2-201ENST00000233146 CADPSQ9ULU8 1353 aa15.53■□□□□ 0.08
MSH2-201ENST00000233146 HTATSF1O43719 755 aaKnown RBP15.53■□□□□ 0.08
MSH2-201ENST00000233146 GSPT1P15170 499 aaKnown RBP15.53■□□□□ 0.08
MSH2-201ENST00000233146 SMARCE1Q969G3 411 aa15.53■□□□□ 0.08
MSH2-201ENST00000233146 PLEKHG2Q9H7P9 1386 aa15.53■□□□□ 0.08
MSH2-201ENST00000233146 GSCP56915 257 aaPredicted RBP15.53■□□□□ 0.08
MSH2-201ENST00000233146 ST5P78524 1137 aa15.53■□□□□ 0.08
MSH2-201ENST00000233146 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.53■□□□□ 0.08
MSH2-201ENST00000233146 TCHHQ07283 1943 aa15.53■□□□□ 0.08
MSH2-201ENST00000233146 FBXO18Q8NFZ0 1043 aa15.53■□□□□ 0.08
MSH2-201ENST00000233146 SHPRHQ149N8 1683 aa15.53■□□□□ 0.08
MSH2-201ENST00000233146 ZSCAN25Q6NSZ9 544 aa15.52■□□□□ 0.08
MSH2-201ENST00000233146 PACS2Q86VP3 889 aa15.52■□□□□ 0.08
MSH2-201ENST00000233146 ZNF592Q92610 1267 aa15.52■□□□□ 0.08
MSH2-201ENST00000233146 TMX3Q96JJ7 454 aa15.52■□□□□ 0.08
MSH2-201ENST00000233146 MYOM1P52179 1685 aa15.52■□□□□ 0.07
MSH2-201ENST00000233146 CUL4AQ13619 759 aa15.52■□□□□ 0.07
MSH2-201ENST00000233146 TTC31Q49AM3 519 aaPredicted RBP15.52■□□□□ 0.07
MSH2-201ENST00000233146 CXorf56Q9H5V9 222 aa15.52■□□□□ 0.07
MSH2-201ENST00000233146 PBRM1Q86U86 1689 aa15.52■□□□□ 0.07
MSH2-201ENST00000233146 SLU7O95391 586 aaKnown RBP15.51■□□□□ 0.07
MSH2-201ENST00000233146 UBXN6Q9BZV1 441 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 NUP160Q12769 1436 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 KIF1CO43896 1103 aaKnown RBP15.51■□□□□ 0.07
MSH2-201ENST00000233146 CLCN6P51797 869 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 GPS2Q13227 327 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 GOLGA5Q8TBA6 731 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 SSH1Q8WYL5 1049 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 ADCY10Q96PN6 1610 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 PPIP5K1Q6PFW1 1433 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 ZRANB2O95218 330 aaKnown RBP eCLIP15.51■□□□□ 0.07
MSH2-201ENST00000233146 IQUBQ8NA54 791 aa15.51■□□□□ 0.07
MSH2-201ENST00000233146 NOB1Q9ULX3 412 aaKnown RBP15.51■□□□□ 0.07
MSH2-201ENST00000233146 SART3Q15020 963 aaKnown RBP15.5■□□□□ 0.07
MSH2-201ENST00000233146 NYAP1Q6ZVC0 841 aa15.5■□□□□ 0.07
MSH2-201ENST00000233146 HOMEZQ8IX15 550 aa15.5■□□□□ 0.07
MSH2-201ENST00000233146 POLR3GO15318 223 aaPredicted RBP15.5■□□□□ 0.07
MSH2-201ENST00000233146 SWT1Q5T5J6 900 aaKnown RBP15.5■□□□□ 0.07
MSH2-201ENST00000233146 DEF6Q9H4E7 631 aa15.5■□□□□ 0.07
MSH2-201ENST00000233146 EXOC6BQ9Y2D4 811 aa15.5■□□□□ 0.07
MSH2-201ENST00000233146 NOS1P29475 1434 aa15.5■□□□□ 0.07
MSH2-201ENST00000233146 MAGEA9P43362 315 aa15.5■□□□□ 0.07
MSH2-201ENST00000233146 NOM1Q5C9Z4 860 aaKnown RBP15.5■□□□□ 0.07
MSH2-201ENST00000233146 CCDC91Q7Z6B0 441 aa15.5■□□□□ 0.07
MSH2-201ENST00000233146 RNF17Q9BXT8 1623 aaKnown RBP15.49■□□□□ 0.07
MSH2-201ENST00000233146 CCDC171Q6TFL3 1326 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms