RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 CCDC136Q96JN2 1154 aa23.4■■□□□ 1.34
VIM-201ENST00000224237 CANXP27824 592 aaKnown RBP23.39■■□□□ 1.34
VIM-201ENST00000224237 MCM10Q7L590 875 aa23.39■■□□□ 1.34
VIM-201ENST00000224237 ZNF428Q96B54 188 aa23.39■■□□□ 1.34
VIM-201ENST00000224237 AHDC1Q5TGY3 1603 aaPredicted RBP23.39■■□□□ 1.33
VIM-201ENST00000224237 LMO7Q8WWI1 1683 aa23.38■■□□□ 1.33
VIM-201ENST00000224237 PDE3AQ14432 1141 aa23.38■■□□□ 1.33
VIM-201ENST00000224237 FAM208AQ9UK61 1670 aaKnown RBP23.38■■□□□ 1.33
VIM-201ENST00000224237 GNAT3A8MTJ3 354 aa23.37■■□□□ 1.33
VIM-201ENST00000224237 CRB1P82279 1406 aa23.37■■□□□ 1.33
VIM-201ENST00000224237 LRRC37A3O60309 1634 aa23.37■■□□□ 1.33
VIM-201ENST00000224237 MAP3K5Q99683 1374 aa23.37■■□□□ 1.33
VIM-201ENST00000224237 HAP1P54257 671 aaPredicted RBP23.36■■□□□ 1.33
VIM-201ENST00000224237 BCL2L13Q9BXK5 485 aa23.36■■□□□ 1.33
VIM-201ENST00000224237 FRAT1Q92837 279 aaPredicted RBP23.35■■□□□ 1.33
VIM-201ENST00000224237 SMC4Q9NTJ3 1288 aa23.35■■□□□ 1.33
VIM-201ENST00000224237 CHL1O00533 1208 aa23.34■■□□□ 1.33
VIM-201ENST00000224237 ALDH1L2Q3SY69 923 aa23.34■■□□□ 1.33
VIM-201ENST00000224237 PRDM11Q9NQV5 511 aa23.34■■□□□ 1.33
VIM-201ENST00000224237 PIP4K2BP78356 416 aa23.33■■□□□ 1.33
VIM-201ENST00000224237 SSH1Q8WYL5 1049 aa23.33■■□□□ 1.33
VIM-201ENST00000224237 AMOTQ4VCS5 1084 aa23.32■■□□□ 1.32
VIM-201ENST00000224237 NLRP2Q9NX02 1062 aa23.32■■□□□ 1.32
VIM-201ENST00000224237 VAMP4O75379 141 aa23.31■■□□□ 1.32
VIM-201ENST00000224237 PLEKHO1Q53GL0 409 aaPredicted RBP23.31■■□□□ 1.32
VIM-201ENST00000224237 CSB-PGBD3P0DP91 1061 aa23.3■■□□□ 1.32
VIM-201ENST00000224237 KIF16BQ96L93 1317 aa23.3■■□□□ 1.32
VIM-201ENST00000224237 TWISTNBQ3B726 338 aaPredicted RBP23.3■■□□□ 1.32
VIM-201ENST00000224237 ZKSCAN2Q63HK3 967 aa23.3■■□□□ 1.32
VIM-201ENST00000224237 PHLPP1O60346 1717 aa23.29■■□□□ 1.32
VIM-201ENST00000224237 TOM1O60784 492 aa23.29■■□□□ 1.32
VIM-201ENST00000224237 MS4A1P11836 297 aa23.28■■□□□ 1.32
VIM-201ENST00000224237 BRPF1P55201 1214 aaPredicted RBP23.28■■□□□ 1.32
VIM-201ENST00000224237 TSPYL6Q8N831 410 aa23.28■■□□□ 1.32
VIM-201ENST00000224237 PLEKHG2Q9H7P9 1386 aa23.28■■□□□ 1.32
VIM-201ENST00000224237 COL16A1Q07092 1604 aaPredicted RBP23.28■■□□□ 1.32
VIM-201ENST00000224237 AKAP4Q5JQC9 854 aa23.27■■□□□ 1.32
VIM-201ENST00000224237 C8orf58Q8NAV2 365 aa23.27■■□□□ 1.32
VIM-201ENST00000224237 TSPYL4Q9UJ04 414 aa23.27■■□□□ 1.32
VIM-201ENST00000224237 IL17REQ8NFR9 667 aa23.26■■□□□ 1.31
VIM-201ENST00000224237 PANK1Q8TE04 598 aa23.26■■□□□ 1.31
VIM-201ENST00000224237 CEMIPQ8WUJ3 1361 aa23.26■■□□□ 1.31
VIM-201ENST00000224237 UBAP1LF5GYI3 381 aa23.26■■□□□ 1.31
VIM-201ENST00000224237 ZNF530Q6P9A1 599 aaPredicted RBP23.26■■□□□ 1.31
VIM-201ENST00000224237 BABAM1Q9NWV8 329 aa23.26■■□□□ 1.31
VIM-201ENST00000224237 COL5A2P05997 1499 aaPredicted RBP23.25■■□□□ 1.31
VIM-201ENST00000224237 COL22A1Q8NFW1 1626 aaPredicted RBP23.25■■□□□ 1.31
VIM-201ENST00000224237 RAPGEF4Q8WZA2 1011 aa23.25■■□□□ 1.31
VIM-201ENST00000224237 ELL2O00472 640 aaPredicted RBP23.24■■□□□ 1.31
VIM-201ENST00000224237 IPO8O15397 1037 aaKnown RBP23.24■■□□□ 1.31
VIM-201ENST00000224237 MEGF6O75095 1541 aa23.24■■□□□ 1.31
VIM-201ENST00000224237 C1orf141Q5JVX7 400 aa23.24■■□□□ 1.31
VIM-201ENST00000224237 FTSJ3Q8IY81 847 aaKnown RBP23.24■■□□□ 1.31
VIM-201ENST00000224237 MIS18AQ9NYP9 233 aa23.24■■□□□ 1.31
VIM-201ENST00000224237 COG6Q9Y2V7 657 aa23.24■■□□□ 1.31
VIM-201ENST00000224237 ATF7IPQ6VMQ6 1270 aa23.23■■□□□ 1.31
VIM-201ENST00000224237 NOB1Q9ULX3 412 aaKnown RBP23.23■■□□□ 1.31
VIM-201ENST00000224237 OVOS2A0A0G2JMS6 1433 aa23.22■■□□□ 1.31
VIM-201ENST00000224237 TAF7Q15545 349 aaPredicted RBP23.22■■□□□ 1.31
VIM-201ENST00000224237 DZIP1LQ8IYY4 767 aaKnown RBP23.22■■□□□ 1.31
VIM-201ENST00000224237 WDR17Q8IZU2 1322 aa23.22■■□□□ 1.31
VIM-201ENST00000224237 RLBP1P12271 317 aa23.22■■□□□ 1.31
VIM-201ENST00000224237 TRIM27P14373 513 aa23.22■■□□□ 1.31
VIM-201ENST00000224237 TATP17735 454 aaPredicted RBP23.22■■□□□ 1.31
VIM-201ENST00000224237 AAMPQ13685 434 aa23.22■■□□□ 1.31
VIM-201ENST00000224237 MRPL50Q8N5N7 158 aaKnown RBP23.21■■□□□ 1.31
VIM-201ENST00000224237 KRT24Q2M2I5 525 aa23.2■■□□□ 1.3
VIM-201ENST00000224237 CLUAP1Q96AJ1 413 aa23.2■■□□□ 1.3
VIM-201ENST00000224237 STRN4Q9NRL3 753 aa23.2■■□□□ 1.3
VIM-201ENST00000224237 TNNQ9UQP3 1299 aa23.2■■□□□ 1.3
VIM-201ENST00000224237 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.19■■□□□ 1.3
VIM-201ENST00000224237 VIRMAQ69YN4 1812 aaKnown RBP23.19■■□□□ 1.3
VIM-201ENST00000224237 TOM1L2Q6ZVM7 507 aa23.19■■□□□ 1.3
VIM-201ENST00000224237 LGR6Q9HBX8 967 aa23.19■■□□□ 1.3
VIM-201ENST00000224237 MVPQ14764 893 aaKnown RBP23.18■■□□□ 1.3
VIM-201ENST00000224237 ARHGAP45Q92619 1136 aa23.18■■□□□ 1.3
VIM-201ENST00000224237 SPG7Q9UQ90 795 aa23.17■■□□□ 1.3
VIM-201ENST00000224237 PKD1L3Q7Z443 1732 aa23.17■■□□□ 1.3
VIM-201ENST00000224237 ADAMTS7Q9UKP4 1686 aa23.17■■□□□ 1.3
VIM-201ENST00000224237 LARP1Q6PKG0 1096 aaKnown RBP23.17■■□□□ 1.3
VIM-201ENST00000224237 MPRIPQ6WCQ1 1025 aa23.17■■□□□ 1.3
VIM-201ENST00000224237 SOS1Q07889 1333 aaPredicted RBP23.16■■□□□ 1.3
VIM-201ENST00000224237 TEFQ10587 303 aa23.16■■□□□ 1.3
VIM-201ENST00000224237 RNMTO43148 476 aaKnown RBP23.15■■□□□ 1.3
VIM-201ENST00000224237 BTG4Q9NY30 223 aa23.15■■□□□ 1.3
VIM-201ENST00000224237 PARP4Q9UKK3 1724 aaKnown RBP23.15■■□□□ 1.3
VIM-201ENST00000224237 KDM3BQ7LBC6 1761 aa23.15■■□□□ 1.3
VIM-201ENST00000224237 COL14A1Q05707 1796 aaKnown RBP23.14■■□□□ 1.3
VIM-201ENST00000224237 TCERG1O14776 1098 aaKnown RBP23.14■■□□□ 1.29
VIM-201ENST00000224237 EVA1CP58658 441 aa23.14■■□□□ 1.29
VIM-201ENST00000224237 CERKQ8TCT0 537 aa23.14■■□□□ 1.29
VIM-201ENST00000224237 ADAMTS2O95450 1211 aa23.13■■□□□ 1.29
VIM-201ENST00000224237 TSHZ2Q9NRE2 1034 aa23.13■■□□□ 1.29
VIM-201ENST00000224237 DDX19BQ9UMR2 479 aa23.13■■□□□ 1.29
VIM-201ENST00000224237 CARD10Q9BWT7 1032 aa23.12■■□□□ 1.29
VIM-201ENST00000224237 KDM2BQ8NHM5 1336 aa23.12■■□□□ 1.29
VIM-201ENST00000224237 CENPQQ7L2Z9 268 aaPredicted RBP23.11■■□□□ 1.29
VIM-201ENST00000224237 SIPA1L3O60292 1781 aaPredicted RBP23.11■■□□□ 1.29
VIM-201ENST00000224237 NUTM2BA6NNL0 878 aaPredicted RBP23.11■■□□□ 1.29
VIM-201ENST00000224237 NUTM2EB1AL46 878 aaPredicted RBP23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms