RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 MAP4K4O95819 1239 aaPredicted RBP15.99■□□□□ 0.15
SF3A1-201ENST00000215793 DAPK1P53355 1430 aa15.99■□□□□ 0.15
SF3A1-201ENST00000215793 RRS1Q15050 365 aaKnown RBP15.98■□□□□ 0.15
SF3A1-201ENST00000215793 TDO2P48775 406 aa15.98■□□□□ 0.15
SF3A1-201ENST00000215793 PDCL3Q9H2J4 239 aa15.98■□□□□ 0.15
SF3A1-201ENST00000215793 KIF1BPQ96EK5 621 aa15.98■□□□□ 0.15
SF3A1-201ENST00000215793 SLC26A8Q96RN1 970 aa15.98■□□□□ 0.15
SF3A1-201ENST00000215793 GNAT3A8MTJ3 354 aa15.97■□□□□ 0.15
SF3A1-201ENST00000215793 LEKR1Q6ZMV7 388 aa15.97■□□□□ 0.15
SF3A1-201ENST00000215793 FBXO3Q9UK99 471 aa15.97■□□□□ 0.15
SF3A1-201ENST00000215793 ERLIN1O75477 346 aa15.97■□□□□ 0.15
SF3A1-201ENST00000215793 TMEM57Q8N5G2 664 aa15.97■□□□□ 0.15
SF3A1-201ENST00000215793 KCNH5Q8NCM2 988 aa15.97■□□□□ 0.15
SF3A1-201ENST00000215793 GLRX3O76003 335 aaKnown RBP15.97■□□□□ 0.15
SF3A1-201ENST00000215793 IFT140Q96RY7 1462 aa15.96■□□□□ 0.15
SF3A1-201ENST00000215793 NSD3Q9BZ95 1437 aa15.96■□□□□ 0.15
SF3A1-201ENST00000215793 GOLGA6L10A6NI86 522 aa15.96■□□□□ 0.15
SF3A1-201ENST00000215793 CCDC181Q5TID7 509 aa15.96■□□□□ 0.15
SF3A1-201ENST00000215793 ZHX3Q9H4I2 956 aa15.96■□□□□ 0.15
SF3A1-201ENST00000215793 RAB11FIP3O75154 756 aa15.96■□□□□ 0.14
SF3A1-201ENST00000215793 KRI1Q8N9T8 703 aaKnown RBP15.96■□□□□ 0.14
SF3A1-201ENST00000215793 UPF3BQ9BZI7 483 aaKnown RBP15.96■□□□□ 0.14
SF3A1-201ENST00000215793 TANGO6Q9C0B7 1094 aa15.96■□□□□ 0.14
SF3A1-201ENST00000215793 ABCC11Q96J66 1382 aa15.96■□□□□ 0.14
SF3A1-201ENST00000215793 SMTNL1A8MU46 457 aa15.95■□□□□ 0.14
SF3A1-201ENST00000215793 NUDT16Q96DE0 195 aaKnown RBP15.95■□□□□ 0.14
SF3A1-201ENST00000215793 IMMTQ16891 758 aaKnown RBP15.95■□□□□ 0.14
SF3A1-201ENST00000215793 AEBP2Q6ZN18 517 aaPredicted RBP15.95■□□□□ 0.14
SF3A1-201ENST00000215793 ALDH1L2Q3SY69 923 aa15.95■□□□□ 0.14
SF3A1-201ENST00000215793 HMGB2P26583 209 aaKnown RBP15.95■□□□□ 0.14
SF3A1-201ENST00000215793 HECW1Q76N89 1606 aa15.95■□□□□ 0.14
SF3A1-201ENST00000215793 TSPYL1Q9H0U9 437 aa15.94■□□□□ 0.14
SF3A1-201ENST00000215793 RAI14Q9P0K7 980 aa15.94■□□□□ 0.14
SF3A1-201ENST00000215793 LRP2BPQ9P2M1 347 aa15.94■□□□□ 0.14
SF3A1-201ENST00000215793 IGHMBP2P38935 993 aaKnown RBP15.94■□□□□ 0.14
SF3A1-201ENST00000215793 EXOC6BQ9Y2D4 811 aa15.94■□□□□ 0.14
SF3A1-201ENST00000215793 U3KPZ7 1027 aaPredicted RBP15.94■□□□□ 0.14
SF3A1-201ENST00000215793 EIF3JO75822 258 aaKnown RBP15.93■□□□□ 0.14
SF3A1-201ENST00000215793 DUSP27Q5VZP5 1158 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 MX1P20591 662 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 CCDC184Q52MB2 194 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 STK11IPQ8N1F8 1099 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 TIAM1Q13009 1591 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 STARD3NLO95772 234 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 CEP131Q9UPN4 1083 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 MAP3K11Q16584 847 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 IQCEQ6IPM2 695 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 AIDAQ96BJ3 306 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 AKAP2Q9Y2D5 859 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 POGZQ7Z3K3 1410 aa15.93■□□□□ 0.14
SF3A1-201ENST00000215793 IDH1O75874 414 aaKnown RBP15.92■□□□□ 0.14
SF3A1-201ENST00000215793 RAPGEF3O95398 923 aa15.92■□□□□ 0.14
SF3A1-201ENST00000215793 LARP1Q6PKG0 1096 aaKnown RBP15.92■□□□□ 0.14
SF3A1-201ENST00000215793 CASTP20810 708 aaKnown RBP15.92■□□□□ 0.14
SF3A1-201ENST00000215793 MRC2Q9UBG0 1479 aa15.92■□□□□ 0.14
SF3A1-201ENST00000215793 ESPNB1AK53 854 aa15.92■□□□□ 0.14
SF3A1-201ENST00000215793 NEFHP12036 1026 aa15.92■□□□□ 0.14
SF3A1-201ENST00000215793 PAF1Q8N7H5 531 aa15.92■□□□□ 0.14
SF3A1-201ENST00000215793 FILIP1Q7Z7B0 1213 aa15.91■□□□□ 0.14
SF3A1-201ENST00000215793 SYNJ1O43426 1573 aa15.91■□□□□ 0.14
SF3A1-201ENST00000215793 ZRSR2Q15696 482 aaKnown RBP15.91■□□□□ 0.14
SF3A1-201ENST00000215793 SKIDA1Q1XH10 827 aa15.91■□□□□ 0.14
SF3A1-201ENST00000215793 POLA1P09884 1462 aaPredicted RBP15.9■□□□□ 0.14
SF3A1-201ENST00000215793 SSBP05455 408 aaKnown RBP eCLIP15.9■□□□□ 0.14
SF3A1-201ENST00000215793 NUTM1Q86Y26 1132 aa15.9■□□□□ 0.14
SF3A1-201ENST00000215793 ZNF287Q9HBT7 754 aa15.9■□□□□ 0.14
SF3A1-201ENST00000215793 SCAND2PQ9GZW5 306 aaPredicted RBP15.9■□□□□ 0.14
SF3A1-201ENST00000215793 RARSP54136 660 aaKnown RBP15.9■□□□□ 0.14
SF3A1-201ENST00000215793 NAIPQ13075 1403 aa15.9■□□□□ 0.14
SF3A1-201ENST00000215793 SSH1Q8WYL5 1049 aa15.89■□□□□ 0.14
SF3A1-201ENST00000215793 SH2B1Q9NRF2 756 aaPredicted RBP15.89■□□□□ 0.14
SF3A1-201ENST00000215793 ANKRD18AQ8IVF6 992 aa15.89■□□□□ 0.13
SF3A1-201ENST00000215793 METTL24Q5JXM2 366 aa15.89■□□□□ 0.13
SF3A1-201ENST00000215793 KIF2AO00139 706 aaPredicted RBP15.89■□□□□ 0.13
SF3A1-201ENST00000215793 RBM5P52756 815 aaKnown RBP eCLIP15.89■□□□□ 0.13
SF3A1-201ENST00000215793 AMOTQ4VCS5 1084 aa15.89■□□□□ 0.13
SF3A1-201ENST00000215793 CCDC141Q6ZP82 1450 aa15.89■□□□□ 0.13
SF3A1-201ENST00000215793 CCDC196A0A1B0GTZ2 297 aa15.88■□□□□ 0.13
SF3A1-201ENST00000215793 EPB41L2O43491 1005 aaKnown RBP15.88■□□□□ 0.13
SF3A1-201ENST00000215793 TAF7Q15545 349 aaPredicted RBP15.88■□□□□ 0.13
SF3A1-201ENST00000215793 FAM177A1Q8N128 213 aaPredicted RBP15.88■□□□□ 0.13
SF3A1-201ENST00000215793 PHF23Q9BUL5 403 aaPredicted RBP15.88■□□□□ 0.13
SF3A1-201ENST00000215793 ZSCAN29Q8IWY8 852 aaPredicted RBP15.88■□□□□ 0.13
SF3A1-201ENST00000215793 MPNDQ8N594 471 aa15.88■□□□□ 0.13
SF3A1-201ENST00000215793 DDX11Q96FC9 970 aa15.88■□□□□ 0.13
SF3A1-201ENST00000215793 EIF5P55010 431 aaKnown RBP15.88■□□□□ 0.13
SF3A1-201ENST00000215793 ZC3H6P61129 1189 aaKnown RBP15.88■□□□□ 0.13
SF3A1-201ENST00000215793 RBM10P98175 930 aaKnown RBP15.87■□□□□ 0.13
SF3A1-201ENST00000215793 SEPT7Q16181 437 aaKnown RBP15.87■□□□□ 0.13
SF3A1-201ENST00000215793 ARHGAP29Q52LW3 1261 aa15.87■□□□□ 0.13
SF3A1-201ENST00000215793 HMGB1P09429 215 aaKnown RBP15.87■□□□□ 0.13
SF3A1-201ENST00000215793 SF3B2Q13435 895 aaKnown RBP15.87■□□□□ 0.13
SF3A1-201ENST00000215793 CFAP100Q494V2 611 aa15.87■□□□□ 0.13
SF3A1-201ENST00000215793 MCM10Q7L590 875 aa15.87■□□□□ 0.13
SF3A1-201ENST00000215793 ABCF2Q9UG63 623 aa15.87■□□□□ 0.13
SF3A1-201ENST00000215793 SUPT6HQ7KZ85 1726 aaKnown RBP15.87■□□□□ 0.13
SF3A1-201ENST00000215793 KIAA0754O94854 1291 aa15.87■□□□□ 0.13
SF3A1-201ENST00000215793 IFIT1P09914 478 aaKnown RBP15.87■□□□□ 0.13
SF3A1-201ENST00000215793 GOLGA6L7A0A1B0GV03 622 aa15.87■□□□□ 0.13
SF3A1-201ENST00000215793 ZNF652Q9Y2D9 606 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms