RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 TGFB2P61812 414 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 RALGDSQ12967 914 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 HNF4GQ14541 408 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 CBWD6Q4V339 395 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 CBWD3Q5JTY5 395 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 C6orf163Q5TEZ5 329 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 SHQ1Q6PI26 577 aaKnown RBP7.34□□□□□ -1.23
NUP54-215ENST00000514313 IQCHQ86VS3 1027 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 FBXO39Q8N4B4 442 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 PI4KAP1Q8N8J0 262 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 ORAI1Q96D31 301 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 VMP1Q96GC9 406 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 GBP5Q96PP8 586 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 HGH1Q9BTY7 390 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 SPRY4Q9C004 299 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 WDR26Q9H7D7 661 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 TUBA8Q9NY65 449 aaPredicted RBP7.34□□□□□ -1.23
NUP54-215ENST00000514313 TINAGQ9UJW2 476 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 GTF3C4Q9UKN8 822 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 BTBD3Q9Y2F9 522 aa7.34□□□□□ -1.23
NUP54-215ENST00000514313 H0YGN5 161 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 CREG1O75629 220 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 RECQL5O94762 991 aaPredicted RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 SLPIP03973 132 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 FYNP06241 537 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 VPREB1P12018 145 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 FDPSP14324 419 aaKnown RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 RFX5P48382 616 aaPredicted RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 CDH13P55290 713 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 CSNK2A1P68400 391 aaPredicted RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 SIRPAP78324 504 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 SRSF1Q07955 248 aaKnown RBP eCLIP7.33□□□□□ -1.24
NUP54-215ENST00000514313 MAD2L1Q13257 205 aaPredicted RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 PPP6R3Q5H9R7 873 aaPredicted RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 LCE1DQ5T752 114 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 DUS1LQ6P1R4 473 aaKnown RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 PAPD4Q6PIY7 484 aaKnown RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 SHC4Q6S5L8 630 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 SLC36A4Q6YBV0 504 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 MFSD6Q6ZSS7 791 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 INTS8Q75QN2 995 aaKnown RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 RASGEF1CQ8N431 466 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 CSNK2A3Q8NEV1 391 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 TSPAN14Q8NG11 270 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 RND1Q92730 232 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 RHBDF1Q96CC6 855 aa7.33□□□□□ -1.24
NUP54-215ENST00000514313 RAB3IPQ96QF0 476 aaPredicted RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 TRNAU1APQ9NX07 287 aaKnown RBP7.33□□□□□ -1.24
NUP54-215ENST00000514313 EDDM13A0A1B0GTR0 161 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 H0Y626 953 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 SLC7A4O43246 635 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 SOX30O94993 753 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 TGDSO95455 350 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 VNN2O95498 520 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 CELA2AP08217 269 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 FGF2P09038 288 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 GJA1P17302 382 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 TLX1P31314 330 aaPredicted RBP7.32□□□□□ -1.24
NUP54-215ENST00000514313 NPY4RP50391 375 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 RAB28P51157 221 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 TNIP1Q15025 636 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 RBMS2Q15434 407 aaKnown RBP7.32□□□□□ -1.24
NUP54-215ENST00000514313 TRIP6Q15654 476 aaKnown RBP7.32□□□□□ -1.24
NUP54-215ENST00000514313 HYAL4Q2M3T9 481 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 ATP13A5Q4VNC0 1218 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 DCST1Q5T197 706 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 FRG2Q64ET8 278 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 METTL23Q86XA0 190 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 SNX32Q86XE0 403 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 PRIMA1Q86XR5 153 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 NRROSQ86YC3 692 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 TMEM199Q8N511 208 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 AFAP1Q8N556 730 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 MPLKIPQ8TAP9 179 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 HDAC11Q96DB2 347 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 URB1-AS1Q96HZ7 61 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 GPATCH1Q9BRR8 931 aaKnown RBP7.32□□□□□ -1.24
NUP54-215ENST00000514313 DESI2Q9BSY9 194 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 CHMP1AQ9HD42 196 aaPredicted RBP7.32□□□□□ -1.24
NUP54-215ENST00000514313 PAM16Q9Y3D7 125 aa7.32□□□□□ -1.24
NUP54-215ENST00000514313 CYP1A2P05177 515 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 HSP90AB1P08238 724 aaKnown RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 ERCC2P18074 760 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 TNFRSF1BP20333 461 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 KELP23276 732 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 NMBRP28336 390 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 RPL3P39023 403 aaKnown RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 APOBEC1P41238 236 aaKnown RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 ENTPD1P49961 510 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 FOXM1Q08050 763 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 PTGR1Q14914 329 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 ASIC2Q16515 512 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 KRTAP15-1Q3LI76 137 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 LCN10Q6JVE6 187 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 CAVIN1Q6NZI2 390 aaKnown RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 KCTD18Q6PI47 426 aaPredicted RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 Q6ZTK2 550 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 CENPVQ7Z7K6 275 aaPredicted RBP7.31□□□□□ -1.24
NUP54-215ENST00000514313 GLRX5Q86SX6 157 aa7.31□□□□□ -1.24
NUP54-215ENST00000514313 ZC3HC1Q86WB0 502 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms