RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 OR1D5P58170 312 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 DCDC1P59894 354 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 RHDQ02161 417 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 CDK18Q07002 472 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 VAC14Q08AM6 782 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 TRA2AQ13595 282 aaKnown RBP eCLIP18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 PDPK2PQ6A1A2 396 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 NPNTQ6UXI9 565 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 TRIM74Q86UV6 250 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 TC2NQ8N9U0 490 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 TFB1MQ8WVM0 346 aaKnown RBP18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 WBP1Q96G27 269 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 CALR3Q96L12 384 aaKnown RBP18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 ZSCAN5AQ9BUG6 496 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 GLOD4Q9HC38 313 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 SEPT10Q9P0V9 454 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 NFKBIL1Q9UBC1 381 aaPredicted RBP18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 ZNHIT2Q9UHR6 403 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 ALG6Q9Y672 507 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 GPR89AB7ZAQ6 455 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 ERVH48-1M5A8F1 160 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 HGSO14964 777 aaPredicted RBP18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 DNAJC6O75061 913 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 NDST3O95803 873 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 GPR89BP0CG08 455 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 TNNT1P13805 278 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 SLC2A4P14672 509 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 FASLGP48023 281 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 DYNLT1P63172 113 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 GPLD1P80108 840 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 PRKD1Q15139 912 aaPredicted RBP18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 SPA17Q15506 151 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 AMZ1Q400G9 498 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 TFDP3Q5H9I0 405 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 PHF19Q5T6S3 580 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 MARK2Q7KZI7 788 aaKnown RBP18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 TMC3Q7Z5M5 1100 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 JAMLQ86YT9 394 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 RCOR2Q8IZ40 523 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 SLC39A7Q92504 469 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 TEKT5Q96M29 485 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 CARD9Q9H257 536 aa18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 SMG1Q96Q15 3661 aaKnown RBP18.91■□□□□ 0.62
CCDC28A-203ENST00000617445 FADS2P1A8MWK0 482 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 PPM1DO15297 605 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 CST8O60676 142 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 ZRANB2O95218 330 aaKnown RBP eCLIP18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 CD82P27701 267 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 CD1CP29017 333 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 CYLC1P35663 651 aaPredicted RBP18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 CLN3Q13286 438 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 GALNT3Q14435 633 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 TMEM164Q5U3C3 297 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 SPOCD1Q6ZMY3 1216 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 LYSMD3Q7Z3D4 306 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 KATNAL2Q8IYT4 538 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 SFRP1Q8N474 314 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 AVL9Q8NBF6 648 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 OR4D9Q8NGE8 314 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 P3H4Q92791 437 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 VAT1Q99536 393 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 CEP41Q9BYV8 373 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 CPNE5Q9HCH3 593 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 PISDQ9UG56 409 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 PLEKHM1Q9Y4G2 1056 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 HYOU1Q9Y4L1 999 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 PCDHA13Q9Y5I0 950 aa18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 OAS3Q9Y6K5 1087 aaKnown RBP18.9■□□□□ 0.62
CCDC28A-203ENST00000617445 OR5K4A6NMS3 321 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 K7ENP7 123 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 NUAK1O60285 661 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 EPOP01588 193 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 ATP1A1P05023 1023 aaKnown RBP18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 PTPN3P26045 913 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 LIMK2P53671 638 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 ARHGAP40Q5TG30 622 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 C11orf63Q6NUN7 778 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 INO80CQ6PI98 192 aaPredicted RBP18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 USP53Q70EK8 1073 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 TMPRSS9Q7Z410 1059 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 TRAM1L1Q8N609 369 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 PATE1Q8WXA2 126 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 SH3KBP1Q96B97 665 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 RBM41Q96IZ5 413 aaKnown RBP18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 CCNL2Q96S94 520 aaPredicted RBP18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 HERPUD2Q9BSE4 406 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 SPATA16Q9BXB7 569 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 GPR63Q9BZJ6 419 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 SEMA6CQ9H3T2 930 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 STN1Q9H668 368 aaKnown RBP18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 RDH14Q9HBH5 336 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 TRIM39Q9HCM9 518 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 SARS2Q9NP81 518 aaKnown RBP18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 KCNK4Q9NYG8 393 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 FAM153AQ9UHL3 310 aa18.89■□□□□ 0.61
CCDC28A-203ENST00000617445 IGHV1OR21-1A0A087WYE8 117 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 HACD1B0YJ81 288 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 GRID2O43424 1007 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 SLC25A14O95258 325 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms