RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 LPGAT1Q92604 370 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.09■□□□□ 0.49
VIM-201ENST00000224237 ELSPBP1Q96BH3 223 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 LRIG1Q96JA1 1093 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 KXD1Q9BQD3 176 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 AARSD1Q9BTE6 412 aaKnown RBP18.09■□□□□ 0.49
VIM-201ENST00000224237 OSBPL1AQ9BXW6 950 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 CCDC68Q9H2F9 335 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 SLC30A1Q9Y6M5 507 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 ZNF106Q9H2Y7 1883 aaKnown RBP18.09■□□□□ 0.49
VIM-201ENST00000224237 ATXN2Q99700 1313 aaKnown RBP18.09■□□□□ 0.49
VIM-201ENST00000224237 UBA6A0AVT1 1052 aaPredicted RBP18.09■□□□□ 0.49
VIM-201ENST00000224237 NPIPB15A6NHN6 443 aaPredicted RBP18.09■□□□□ 0.49
VIM-201ENST00000224237 TROVE2P10155 538 aaKnown RBP eCLIP18.09■□□□□ 0.49
VIM-201ENST00000224237 PSMC3P17980 439 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 FDXRP22570 491 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 SLC26A3P40879 764 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 CDKN2DP55273 166 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 CORO7P57737 925 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 RUNX3Q13761 415 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 FAM83EQ2M2I3 478 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 CTC1Q2NKJ3 1217 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 LRRC8EQ6NSJ5 796 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 ZNF549Q6P9A3 640 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 C6orf89Q6UWU4 347 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 C10orf107Q8IVU9 208 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 PIANPQ8IYJ0 282 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 KDM1BQ8NB78 822 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 C7orf26Q96N11 449 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 KLHL32Q96NJ5 620 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 POMKQ9H5K3 350 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 POPDC3Q9HBV1 291 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 KLHL14Q9P2G3 628 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 APPL1Q9UKG1 709 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 FNDC3AQ9Y2H6 1198 aaKnown RBP18.09■□□□□ 0.49
VIM-201ENST00000224237 ARL2BPQ9Y2Y0 163 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 WASF2Q9Y6W5 498 aa18.09■□□□□ 0.49
VIM-201ENST00000224237 PRRT4C9JH25 899 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 MYO1CO00159 1063 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 SNNO75324 88 aaPredicted RBP18.08■□□□□ 0.49
VIM-201ENST00000224237 LEFTY1O75610 366 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 TGDSO95455 350 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 FGF3P11487 239 aaPredicted RBP18.08■□□□□ 0.49
VIM-201ENST00000224237 LAMP2P13473 410 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 NFKBIAP25963 317 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 SUOXP51687 545 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 AGAP9Q5VTM2 703 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 YTHDF3Q7Z739 585 aaKnown RBP18.08■□□□□ 0.49
VIM-201ENST00000224237 STK40Q8N2I9 435 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 CBARPQ8N350 705 aaPredicted RBP18.08■□□□□ 0.49
VIM-201ENST00000224237 MICALL1Q8N3F8 863 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 FSTL5Q8N475 847 aaPredicted RBP18.08■□□□□ 0.49
VIM-201ENST00000224237 NXNL1Q96CM4 212 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 SCYL1Q96KG9 808 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 GPR78Q96P69 363 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 IL36AQ9UHA7 158 aa18.08■□□□□ 0.49
VIM-201ENST00000224237 G3V2L1 256 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 TK2O00142 265 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 DNAJC6O75061 913 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 SRP72O76094 671 aaKnown RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 WISP3O95389 354 aaPredicted RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 PRAMEF1O95521 474 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 SERPINE1P05121 402 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 GRK2P25098 689 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 MTHFRP42898 656 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 GLRBP48167 497 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 CDKN1CP49918 316 aaPredicted RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 KDSRQ06136 332 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 DLG1Q12959 904 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 IFT88Q13099 833 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 STX3Q13277 289 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 CSHL1Q14406 222 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 LRRC66Q68CR7 880 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 KLC3Q6P597 504 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 CRTC1Q6UUV9 634 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 PARM1Q6UWI2 310 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 CERS6Q6ZMG9 384 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 TSPAN33Q86UF1 283 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 SFTPA1Q8IWL2 248 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 TERB1Q8NA31 727 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 FGF14Q92915 247 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 NXPE3Q969Y0 559 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 UBXN10Q96LJ8 280 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 RPP25Q9BUL9 199 aaKnown RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 BRD9Q9H8M2 597 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 THAP1Q9NVV9 213 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 DENND4AQ7Z401 1863 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 TSPAN11A1L157 253 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 LTA4HP09960 611 aaKnown RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 MYL2P10916 166 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 RALBP11234 206 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 PPARGP37231 505 aaPredicted RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 SPAM1P38567 509 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 EIF2DP41214 584 aaKnown RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 PTPN5P54829 565 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 ADARP55265 1226 aaKnown RBP18.07■□□□□ 0.48
VIM-201ENST00000224237 OCRLQ01968 901 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 ARSIQ5FYB1 569 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 FAM151BQ6UXP7 276 aa18.07■□□□□ 0.48
VIM-201ENST00000224237 ZCCHC23Q6ZST2 131 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms