RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RHOJQ9H4E5 214 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 FBXO6Q9NRD1 293 aaPredicted RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 SUN2Q9UH99 717 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 MTO1Q9Y2Z2 717 aaKnown RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 PKP3Q9Y446 797 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 SCN8AQ9UQD0 1980 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 TMEM120BA0PK00 339 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 CD3EAPO15446 510 aaKnown RBP18.59■□□□□ 0.57
CLN3-206ENST00000360019 SPAG7O75391 227 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 HAUS5O94927 633 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 PYGBP11216 843 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 MC4RP32245 332 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 XIAPP98170 497 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 PTSQ03393 145 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 DCLK2Q8N568 766 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 ARFGAP2Q8N6H7 521 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 GPR150Q8NGU9 434 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 PCDH12Q9NPG4 1184 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 CATSPERZQ9NTU4 200 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 ADAM21Q9UKJ8 722 aa18.59■□□□□ 0.57
CLN3-206ENST00000360019 FNDC3AQ9Y2H6 1198 aaKnown RBP18.59■□□□□ 0.57
CLN3-206ENST00000360019 SHISA7A6NL88 538 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 TYROBPO43914 113 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 FOXN2P32314 431 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 LEPRP48357 1165 aaKnown RBP18.58■□□□□ 0.57
CLN3-206ENST00000360019 DNAJC3Q13217 504 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 ARRDC3Q96B67 414 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 SGSM3Q96HU1 749 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 C19orf43Q9BQ61 176 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 KCNK9Q9NPC2 374 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 ATG2BQ96BY7 2078 aa18.58■□□□□ 0.57
CLN3-206ENST00000360019 GAPDHSO14556 408 aaPredicted RBP18.58■□□□□ 0.56
CLN3-206ENST00000360019 TPP1O14773 563 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 NPC1O15118 1278 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 IL1BP01584 269 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 BPIP17213 487 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 ITGB7P26010 798 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 CD151P48509 253 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 SLC18A2Q05940 514 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 MRNIPQ6NTE8 343 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 CNSTQ6PJW8 725 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 GALNT7Q86SF2 657 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 TTC7BQ86TV6 843 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 MMAAQ8IVH4 418 aaKnown RBP18.58■□□□□ 0.56
CLN3-206ENST00000360019 BANPQ8N9N5 519 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 GABPB2Q8TAK5 448 aaPredicted RBP18.58■□□□□ 0.56
CLN3-206ENST00000360019 ISL2Q96A47 359 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 GPR22Q99680 433 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 PRDM6Q9NQX0 595 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 CKAP5Q14008 2032 aa18.58■□□□□ 0.56
CLN3-206ENST00000360019 LOC730098B7Z3J9 87 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 PRPF4O43172 522 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLN3-206ENST00000360019 S1PR4O95977 384 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 C1SP09871 688 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 SRFP11831 508 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 OGNP20774 298 aaKnown RBP18.57■□□□□ 0.56
CLN3-206ENST00000360019 DRD1P21728 446 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 VIPR1P32241 457 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 CDKN1CP49918 316 aaPredicted RBP18.57■□□□□ 0.56
CLN3-206ENST00000360019 PFKPQ01813 784 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 TDGQ13569 410 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 TYSND1Q2T9J0 566 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 FASTKD1Q53R41 847 aaKnown RBP18.57■□□□□ 0.56
CLN3-206ENST00000360019 C2orf27AQ580R0 203 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 PSAPL1Q6NUJ1 521 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 PIANPQ8IYJ0 282 aa18.57■□□□□ 0.56
CLN3-206ENST00000360019 CNOT10Q9H9A5 744 aaKnown RBP18.57■□□□□ 0.56
CLN3-206ENST00000360019 SSU72Q9NP77 194 aaKnown RBP18.57■□□□□ 0.56
CLN3-206ENST00000360019 GPR39O43194 453 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 SPINT1O43278 529 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 CYP2A6P11509 494 aaPredicted RBP18.56■□□□□ 0.56
CLN3-206ENST00000360019 CHN1P15882 459 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 CCNFP41002 786 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 MAGEA12P43365 314 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 STC1P52823 247 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 GRSF1Q12849 480 aaKnown RBP eCLIP18.56■□□□□ 0.56
CLN3-206ENST00000360019 RALGDSQ12967 914 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 CAMK2GQ13555 558 aaPredicted RBP18.56■□□□□ 0.56
CLN3-206ENST00000360019 CMC1Q7Z7K0 106 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 PBXIP1Q96AQ6 731 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 ALKBH8Q96BT7 664 aaKnown RBP18.56■□□□□ 0.56
CLN3-206ENST00000360019 CAB39LQ9H9S4 337 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 IL26Q9NPH9 171 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 SLC2A4RGQ9NR83 387 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 SMG5Q9UPR3 1016 aaKnown RBP18.56■□□□□ 0.56
CLN3-206ENST00000360019 XPAP23025 273 aaPredicted RBP18.56■□□□□ 0.56
CLN3-206ENST00000360019 MMP12P39900 470 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 PSMD8P48556 350 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 E2F5Q15329 346 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 PUS10Q3MIT2 529 aaKnown RBP18.56■□□□□ 0.56
CLN3-206ENST00000360019 FAM151BQ6UXP7 276 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 RFLNAQ6ZTI6 216 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 DPPA4Q7L190 304 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 DSG4Q86SJ6 1040 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 CNPY4Q8N129 248 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 CBARPQ8N350 705 aaPredicted RBP18.56■□□□□ 0.56
CLN3-206ENST00000360019 IL17RCQ8NAC3 791 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 GPR26Q8NDV2 337 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 GABRG3Q99928 467 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 FAM96AQ9H5X1 160 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms