RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 FGF3P11487 239 aaPredicted RBP19.3■□□□□ 0.68
USP48-201ENST00000308271 GNASQ5JWF2 1037 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 CGB2Q6NT52 195 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 COLEC11Q9BWP8 271 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 GBA2Q9HCG7 927 aaPredicted RBP19.3■□□□□ 0.68
USP48-201ENST00000308271 ZBTB26Q9HCK0 441 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 ZFP14Q9HCL3 533 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 IFT80Q9P2H3 777 aaPredicted RBP19.3■□□□□ 0.68
USP48-201ENST00000308271 DKK3Q9UBP4 350 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 IFRD1O00458 451 aaPredicted RBP19.3■□□□□ 0.68
USP48-201ENST00000308271 FGF1P05230 155 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 MYL12AP19105 171 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 IRF9Q00978 393 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 PITRM1Q5JRX3 1037 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 BRMS1LQ5PSV4 323 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 GPR158Q5T848 1215 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 MZT2BQ6NZ67 158 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 KLHL17Q6TDP4 642 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 CDHR3Q6ZTQ4 885 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 TOP6BLQ8N6T0 577 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 ARL10Q8N8L6 244 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 OR4L1Q8NH43 312 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 VPS28Q9UK41 221 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 SERPIND1P05546 499 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 ACSM2AQ08AH3 577 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 BNIP3Q12983 259 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 DGKKQ5KSL6 1271 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 ACSM2BQ68CK6 577 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 COPS5Q92905 334 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 HDHD2Q9H0R4 259 aa19.3■□□□□ 0.68
USP48-201ENST00000308271 RBMX2Q9Y388 322 aaKnown RBP19.3■□□□□ 0.68
USP48-201ENST00000308271 ATRNL1Q5VV63 1379 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 CCDC162PA2VCL2 907 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 CCDC182A6NF36 153 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 H3BN98 237 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 EPB42P16452 691 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 LCP2Q13094 533 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 RALGPS2Q86X27 583 aaPredicted RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 PARP8Q8N3A8 854 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 TBC1D19Q8N5T2 526 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 C12orf43Q96C57 262 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 OR52E6Q96RD3 313 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 RIPK3Q9Y572 518 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 E7ENX8 843 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 GPR25O00155 361 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 CLDN5O00501 218 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 ALOX15P16050 662 aaPredicted RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 CYP2A7P20853 494 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 C9orf57Q5W0N0 161 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 SCAIQ8N9R8 606 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 PRR11Q96HE9 360 aaPredicted RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 SPATA17Q96L03 361 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 TLL2Q9Y6L7 1015 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 PRR23AA6NEV1 266 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 LSM1O15116 133 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 DENRO43583 198 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 EFCAB14O75071 495 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 NDUFS2O75306 463 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 ENDOD1O94919 500 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 NR4A1P22736 598 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 BNC1Q01954 994 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 MOGQ16653 247 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 ZNF57Q68EA5 555 aaPredicted RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 ESRP1Q6NXG1 681 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 RBM12BQ8IXT5 1001 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 RNFT2Q96EX2 444 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 SYT11Q9BT88 431 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 ZYG11BQ9C0D3 744 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 CLEC4MQ9H2X3 399 aaPredicted RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 MOV10Q9HCE1 1003 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 INTS10Q9NVR2 710 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 SAMD4AQ9UPU9 718 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 U3KQV3 271 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 SPTLC1O15269 473 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 HOXC6P09630 235 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 COX7A2P14406 83 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 CCNIQ14094 377 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 CTXN3Q4LDR2 81 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 TMEM214Q6NUQ4 689 aaKnown RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 ADCK2Q7Z695 626 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 GPR180Q86V85 440 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 SLC9A7Q96T83 725 aa19.29■□□□□ 0.68
USP48-201ENST00000308271 MLPHQ9BV36 600 aaPredicted RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 UXTQ9UBK9 157 aaPredicted RBP19.29■□□□□ 0.68
USP48-201ENST00000308271 TNFRSF21O75509 655 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 CCNCP24863 283 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 ICAM3P32942 547 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 MAXP61244 160 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 SVOPLQ8N434 492 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 MCOLN3Q8TDD5 553 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 ZNF696Q9H7X3 374 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 LIN28AQ9H9Z2 209 aaKnown RBP19.28■□□□□ 0.68
USP48-201ENST00000308271 OAZ3Q9UMX2 235 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 SNX6Q9UNH7 406 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 ANXA5P08758 320 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 IGFBP5P24593 272 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 IKBKEQ14164 716 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 TLR1Q15399 786 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 OR52E8Q6IFG1 317 aa19.28■□□□□ 0.68
USP48-201ENST00000308271 CYP4Z2PQ8N1L4 340 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms